Pulse Programs in PP directory
The pulse sequences are named by their intended polarization pathway, where upper-case
letters indicate that a chemical shift dimension is digitized for that portion of the
pathway, and lower-case letters indicate that there is no free precession on that nucleus. 
Square braces indicate simultaneous (or sequential) acquisitions. CA, CB, CO, and Cali 
refer to the α-carbon, β-carbon, carbonyl, and all aliphatic carbons, respectively. The
number of upper-case nuclei indicates the number of dimensions along a particular pathway,
where the square brackets indicate a split in polarization pathway. The type of C-C mixing
is indicated after the polarization pathway, examples in this work are RFDR, DREAM, and J 
(scalar COSY and TOCSY). All heteronuclear polarization transfers were accomplished via CP
in this work. The prefix “war” (for University of Warwick) is used to differentiate these
experiments from other similarly named pulse sequences. The Bruker pulse-program names
(pulse durations (p2), power levels (pl2), delays, etc.) are self-consistent by type. For
example, p10, plw10, plw20, and spnam0 will always refer to an HC CP (as opposed to an HN
or NC CP) period for these pulse sequences. Finally, the “MULREC” suffix is added to
differentiate these experiments from similar experiments that do not use a second receiver.
For example, the pulse program “war.hCBcaNH_RFDR” is expanded into “war.hCBca[C,NH]_RFDR_MULREC” 
indicating that this a 3D that encodes the Cβ (and Cα), N, and HN chemical shifts AND also a 2D 
Cβ-CX experiment. The initial H and intermediate Cα polarizations are not allowed to evolve. 
AFTER stands for the 13C acquisition is positioned after the 3D experiment is finished.

Includes file for AVANCE III HD console in INCL directory

The include files should be copied in the right directory under 
/opt/topspinXX/exp/stan/nmr/lists/pp/user

List of available pulse programs

-war.hCO[C,NH]_RFDR_AFTER
parent: 3D hCONH; child: 2D CC with RFDR mixing over all the carbons and it is placed after CN CP
2D acquisition placed between the mixing and 15N evolution

-war.hCA[C,NH]_RFDR_AFTER
parent: 3D hCANH; child: 2D CC with RFDR mixing over all the carbons and it is placed after CN CP
2D acquisition placed between the mixing and 15N evolution

-war.hCA[NH,C]_RFDR_AFTER
parent: 3D hCANH; child: 2D CC with RFDR mixing over all the carbons and it is placed after 3D acquisition
2D acquisition at the end of the experiment

-war.hCOca[C,NH]_RFDR_MULREC
parent: 3D hCONH; child: 2D CC with RFDR mixing over all the carbons and it is placed before CN CP
2D acquisition placed between the mixing and 15N evolution

-war.hCBca[C,NH]_RFDR_MULREC
parent: 3D hCBcaNH; child: 2D CC with RFDR mixing over all the carbons and it is placed before CN CP
2D acquisition placed between the mixing and 15N evolution

-war.hcaCBca[C,NH]_MULREC
parent: 3D hCBCANH; child: 2D CC with scalar mixing over CA-CB and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hcaCBcaco[C,NH]_MULREC
parent: 3D hCBCAcoNH; child: 2D CC with scalar mixing over CA-CB and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCAco[C,NH]_J_MULREC
parent: 3D hCAcoNH; child: 2D CC with scalar mixing over CA-CO and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCOca[C,NH]_J_MULREC
parent: 3D hCOcaNH; child: 2D CC with scalar mixing over CO-CA and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCACO[C,NH]_DREAM_MULREC
parent: 3D hCAcoNH; child: 2D CC with DREAM mixing over CA-CO and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCOCA[C,NH]_DREAM_MULREC
parent: 3D hCOcaNH; child: 2D CC with DREAM mixing over CO-CA and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCBCA[C,NH]_DREAM_MULREC
parent: 3D hCBCANH; child: 2D CC with DREAM mixing over CB-CA and it is placed before the CN CP
2D acquisition placed after CN CP

-war.hCBca[C,NH]_TOCSY_MULREC
parent: 3D hCBCANH; child: 2D CC with TOCSY scalar mixing over C aliphatic and it is placed before the CN CP
2D acquisition placed after CN CP and the 15N evolution

-war.hCBcaco[C,NH]_TOCSY_MULREC
parent: 3D hCBCAcoNH; child: 2D CC with TOCSY scalar mixing over all the carbons and it is placed before the CN CP
2D acquisition placed after CN CP and the 15N evolution