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Preliminary studies on detection of fusarium basal rot infection in onions and shallots using electronic nose

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Labanska, Malgorzata, Van Amsterdam, Sarah, Jenkins, Sascha, Clarkson, John P. and Covington, James A. (2022) Preliminary studies on detection of fusarium basal rot infection in onions and shallots using electronic nose. Sensors, 22 (14). 5453. doi:10.3390/s22145453 ISSN 1424-8220.

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Official URL: http://dx.doi.org/10.3390/s22145453

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Abstract

The evaluation of crop health status and early disease detection are critical for implementing a fast response to a pathogen attack, managing crop infection, and minimizing the risk of disease spreading. Fusarium oxysporum f. sp. cepae, which causes fusarium basal rot disease, is considered one of the most harmful pathogens of onion and accounts for considerable crop losses annually. In this work, the capability of the PEN 3 electronic nose system to detect onion and shallot bulbs infected with F. oxysporum f. sp. cepae, to track the progression of fungal infection, and to discriminate between the varying proportions of infected onion bulbs was evaluated. To the best of our knowledge, this is a first report on successful application of an electronic nose to detect fungal infections in post-harvest onion and shallot bulbs. Sensor array responses combined with PCA provided a clear discrimination between non-infected and infected onion and shallot bulbs as well as differentiation between samples with varying proportions of infected bulbs. Classification models based on LDA, SVM, and k-NN algorithms successfully differentiate among various rates of infected bulbs in the samples with accuracy up to 96.9%. Therefore, the electronic nose was proved to be a potentially useful tool for rapid, non-destructive monitoring of the post-harvest crops.

Item Type: Journal Article
Subjects: S Agriculture > SB Plant culture
Divisions: Faculty of Science, Engineering and Medicine > Engineering > Engineering
Faculty of Science, Engineering and Medicine > Science > Life Sciences (2010- )
Library of Congress Subject Headings (LCSH): Onions -- Diseases and pests, Fusarium oxysporum , Chemical detectors, Olfactometry, Phytopathogenic microorganisms -- Detection, Fusarium diseases of plants
Journal or Publication Title: Sensors
Publisher: MDPI AG
ISSN: 1424-8220
Official Date: 21 July 2022
Dates:
DateEvent
21 July 2022Published
19 July 2022Accepted
17 June 2022Submitted
Volume: 22
Number: 14
Article Number: 5453
DOI: 10.3390/s22145453
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Open Access (Creative Commons)
Date of first compliant deposit: 3 August 2022
Date of first compliant Open Access: 8 August 2022
RIOXX Funder/Project Grant:
Project/Grant IDRIOXX Funder NameFunder ID
PPN/BEK/2020/1/00383Narodowa Agencja Wymiany AkademickiejUNSPECIFIED

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