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Periodic string comparison
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Tiskin, Alexander (2009) Periodic string comparison. In: 20th Annual Symposium on Combinatorial Pattern Matching, Lille, France, June 22-24, 2009. Published in: Lecture Notes in Computer Science, Vol.5577 pp. 193-206. ISBN 978-3-642-02440-5. doi:10.1007/978-3-642-02441-2_18 ISSN 0302-9743.
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Official URL: http://dx.doi.org/10.1007/978-3-642-02441-2_18
Abstract
In our previous work, we introduced the concept of semi-local string comparison, and developed for it an efficient method called the seaweed algorithm. In the current paper, we introduce its extension, called the periodic seaweed algorithm. The new algorithm allows efficient exploitation of the periodic structure in one of the input strings. By application of the periodic seaweed algorithm, we obtain new algorithms for the tandem LCS problem and the tandem cyclic alignment problem, improving on existing algorithms in running time.
Item Type: | Conference Item (Paper) | ||||
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Subjects: | Q Science > QA Mathematics > QA76 Electronic computers. Computer science. Computer software | ||||
Divisions: | Faculty of Science, Engineering and Medicine > Science > Computer Science | ||||
Series Name: | Lecture Notes in Computer Science | ||||
Journal or Publication Title: | Lecture Notes in Computer Science | ||||
Publisher: | Springer | ||||
ISBN: | 978-3-642-02440-5 | ||||
ISSN: | 0302-9743 | ||||
Editor: | Kucherov, G and Ukkonen, E | ||||
Official Date: | 2009 | ||||
Dates: |
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Volume: | Vol.5577 | ||||
Number of Pages: | 14 | ||||
Page Range: | pp. 193-206 | ||||
DOI: | 10.1007/978-3-642-02441-2_18 | ||||
Status: | Peer Reviewed | ||||
Publication Status: | Published | ||||
Access rights to Published version: | Restricted or Subscription Access | ||||
Conference Paper Type: | Paper | ||||
Title of Event: | 20th Annual Symposium on Combinatorial Pattern Matching | ||||
Type of Event: | Conference | ||||
Location of Event: | Lille, France | ||||
Date(s) of Event: | June 22-24, 2009 |
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