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The structure of the Au(111)/methylthiolate interface : new insights from near-edge X-ray absorption spectroscopy and X-ray standing waves

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Chaudhuri, Anindita, Odelius, Michael, Jones, R. G., Lee, Tien-Lin, Detlefs, B. and Woodruff, D. P.. (2009) The structure of the Au(111)/methylthiolate interface : new insights from near-edge X-ray absorption spectroscopy and X-ray standing waves. Journal of Chemical Physics, Vol.130 (No.12). p. 4708. ISSN 0021-9606

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Official URL: http://dx.doi.org/10.1063/1.3102095

Abstract

The local structure of the Au(111)([square root of]3×[square root of]3)R30°-methylthiolate surface phase has been investigated by S K-edge near-edge s-ray absorption fine structure (NEXAFS) both experimentally and theoretically and by experimental normal-incidence x-ray standing waves (NIXSW) at both the C and S atomic sites. NEXAFS shows not only excitation into the intramolecular sigma* S–C resonance but also into a sigma* S–Au orbital perpendicular to the surface, clearly identifying the local S headgroup site as atop a Au atom. Simulations show that it is not possible, however, to distinguish between the two possible adatom reconstruction models; a single thiolate species atop a hollow-site Au adatom or a dithiolate moiety comprising two thiolate species bonded to a bridge-bonded Au adatom. Within this dithiolate moiety a second sigma* S–Au orbital that lies near parallel to the surface has a higher energy that overlaps that of the sigma* S–C resonance. The new NIXSW data show the S–C bond to be tilted by 61° relative to the surface normal, with a preferred azimuthal orientation in <211>, corresponding to the intermolecular nearest-neighbor directions. This azimuthal orientation is consistent with the thiolate being atop a hollow-site Au adatom, but not consistent with the originally proposed Au-adatom-dithiolate moiety. However, internal conformational changes within this species could, perhaps, render this model also consistent with the experimental data.

Item Type: Journal Article
Subjects: Q Science > QC Physics
Divisions: Faculty of Science > Physics
Library of Congress Subject Headings (LCSH): Adsorption -- Research, Binding sites (Biochemistry), Self-assembly (Chemistry) -- Research, Thin films, Multilayered, X-ray absorption near edge structure
Journal or Publication Title: Journal of Chemical Physics
Publisher: American Institute of Physics
ISSN: 0021-9606
Date: 26 March 2009
Volume: Vol.130
Number: No.12
Page Range: p. 4708
Identification Number: 10.1063/1.3102095
Status: Peer Reviewed
Access rights to Published version: Open Access
Funder: European Synchrotron Radiation Facility (ESRF)
References: 1 L. H. Dubois, R. G. Nuzzo, Annu. Rev. Phys. Chem. 43, 437(1992) . 2 F. Schreiber, Prog. Surf. Sci. 65, 151 (2000). 3 A. Ulman, Chem. Rev. 96, 1533 (1996). 4 C. Vericat, M. E. Vela, and R. C. Salvarezza, Phys. Chem. Chem. Phys. 7, 3258 (2005). 5 D.P.Woodruff, Phys. Chem. Chem. Phys. 10, 7211 (2008). 6 H. Kondoh, M. Iwasaki, T. Shimada, K. Amemiya, T. Yokohama, T. Ohta, M. Shimomura, and K. Kono, Phys. Rev. Lett. 90, 066102 (2003). 7 M.G. Roper, M.P. Skegg, C.J. Fisher, J.J. Lee, V. R. Dhanak, D.P. Woodruff, and R. G. Jones, Chem. Phys. Lett. 389, 87 (2004). 8 Miao Yu, N. Bovet, Christopher J. Satterley, S. Bengió, Kevin R. J. Lovelock, P. K. Milligan, Robert G. Jones, D. P. Woodruff, and V. Dhanak, Phys. Rev. Lett. 97, 166102 (2006). 9 P. Maksymovych, D. S. Sorescu, J. T. Yates, Jr. Phys. Rev. Lett. 97, 146103 (2006). 10 H. Grönbeck and H. Häkkinen, J. Phys. Chem. B, 111, 3325 (2007). 11 M.L. Molina, and B. Hammer, Chem. Phys. Lett. 360, 264 (2002). 12 R. Mazzarello, A. Cossaro, A. Verdini, R. Rousseau, L. Casalis, M.F. Danisman, L. Floreano, S. Scandolo, A. Morgante, and G. Scoles, Phys. Rev. Lett., 98, 016102 (2007). 13 J. Stöhr, NEXAFS Spectroscopy, Springer-Verlag, Berlin, 1977. 14 M. Yu, H. Ascolani, G. Zampieri, D.P. Woodruff, C. J. Satterley, R. G. Jones, and V. R. Dhanak, J. Phys. Chem. C 111, 10904 (2007). 15 A. Shaporenko, M. Zharnikov, P. Feulner, and D. Menzel, J. Phys.: Condens. Matter 18, S1677 (2006). 16 D. P. Woodruff, Rep. Prog. Phys. 68, 743 (2005). 17 K. Hermann, L. G. M. Pettersson, M. E. Casida, C. Daul, A. Goursot, A. Koester, E. Proynov, A. St-Amant, D. R. Salahub, V. Carravetta, A. Duarte, N. Godbout, J. Guan, C. Jamorski, M. Leboeuf, V. Malkin, O. Malkina, M. Nyberg, L. Pedocchi, F. Sim, L. Triguero, and A. Vela, STOBE Software (2002). 18 A. D. Becke, Phys. Rev. A 38, 3098 (1988). 36 19 J. P. Perdew, Phys. Rev. B 33, 8822 (1986); erratum Phys. Rev. B 34, 7406 (1986). 20 N. Godbout, D.R. Salahub, J. Andzelm, and E. Wimmer Can. J. Chem. 70, 560 (1992). 21 Basis sets distributed with the Stobe code available under http://www.demonsoftware. com/public_html/BASIS.html 22 W. Kutzelnigg, U. Fleischer, and M. Schindler, NMR-Basic Principles and Progress (Springer Verlag, Heidelberg, 1990). 23 H. Ågren, V. Carravetta, O. Vahtras, and L. G. M. Pettersson, Theo. Chem. Acc. 97, 14 (1997). 24 L. Triguero, L. G. M. Pettersson, and H. Ågren, Phys. Rev. B 58, 8097 (1998). 25 C. Kolczewski, R. Püttner, O. Plashkevych, H. Ågren, V. Staemmler, M. Martins, G. Snell, A. S. Schlachter, M. Sant'Anna, G. Kaindl, and L. G. M. Pettersson, J. Chem. Phys. 115, 6426 (2001). 26 M S Kariapper, C Fisher, D P Woodruff, B C C Cowie, and R G Jones, J. Phys. Condens. Matter. 12, 2153 (2000). 27 A. Imanishi, S. Takanaka, Y. Yokoyama, Y. Kitajima, and T. Ohta J. Physique Coll. IV 7, C2 701 (1997). 28 D.L. Seymour, C.F. McConville, M.D. Crapper, D.P. Woodruff, and R.G. Jones Structure of Surfaces II (Springer Series in Surface Sciences 11) ed J.F. van der Veen and M.A. Van Hove (Berlin: Springer, 1988) p 189. 29 D.R. Lide, ed. CRC Handbook of Chemistry and Physics (CRC Press, Boca Raton, Fl) 2008. 30 G.J. Jackson, J. Ludecke, S.M. Driver, D.P. Woodruff, R.G. Jones, A. Chan, and B.C.C. Cowie Surf. Sci. 389, 223 (1997). 31 D.P. Woodruff Prog. Surf. Sci. 57, 1 (1998). 32 G. Grönbeck, H. Häkkinen, and R.L. Whetten, J. Phys. Chem. C 112, 15940 (2008).
URI: http://wrap.warwick.ac.uk/id/eprint/2697

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