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SimMLST: simulation of multi-locus sequence typing data under a neutral model
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Didelot, Xavier, Lawson, Daniel J. and Falush, Daniel. (2009) SimMLST: simulation of multi-locus sequence typing data under a neutral model. Bioinformatics, Vol.25 (No.11). pp. 1442-1444. ISSN 1367-4803
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Official URL: http://dx.doi.org/10.1093/bioinformatics/btp145
Abstract
Multi-locus sequence typing (MLST) is a widely used method of characterization of bacterial isolates. It has been applied to over 50 000 isolates in over 50 different species. Here, we present a coalescent method to jointly simulate MLST data and the clonal genealogy that gave rise to the sample.
| Item Type: | Journal Article |
|---|---|
| Subjects: | Q Science > QA Mathematics > QA76 Electronic computers. Computer science. Computer software Q Science > QD Chemistry T Technology > TP Chemical technology Q Science > QH Natural history > QH301 Biology Q Science > QA Mathematics |
| Divisions: | Faculty of Science > Statistics |
| Journal or Publication Title: | Bioinformatics |
| Publisher: | Oxford University Press |
| ISSN: | 1367-4803 |
| Date: | 1 June 2009 |
| Volume: | Vol.25 |
| Number: | No.11 |
| Number of Pages: | 3 |
| Page Range: | pp. 1442-1444 |
| Identification Number: | 10.1093/bioinformatics/btp145 |
| Status: | Peer Reviewed |
| Publication Status: | Published |
| Access rights to Published version: | Restricted or Subscription Access |
| Funder: | Wellcome Trust |
| URI: | http://wrap.warwick.ac.uk/id/eprint/27949 |
Data sourced from Thomson Reuters' Web of Knowledge
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