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Bayesian inference for a stochastic logistic model with switching points

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Tang, Sanyi and Heron, Elizabeth A.. (2008) Bayesian inference for a stochastic logistic model with switching points. Ecological Modelling, Vol.219 (No.1-2). pp. 153-169. ISSN 0304-3800

Full text not available from this repository.
Official URL: http://dx.doi.org/10.1016/j.ecolmodel.2008.08.007

Abstract

In this paper we use Markov chain Monte Carlo (MCMC) techniques to carry out Bayesian inference for piecewise stochastic logistic growth models using discretely observed data sets, which allows us to fit models for time series data, including data on fish productions and yields, with structural changes. The estimation framework involves the introduction of latent data points between each pair of observations, and the use of MCMC techniques, based on the Gibbs sampling algorithm, in conjunction with the Euler-Maruyama discretization. scheme. These methods are used to sample from the posterior distribution using exact bridges, allowing estimation of the model parameters including switching point(s). We apply our methods to examples involving both simulated data and real data for fisheries resources management. (C) 2008 Elsevier BY. All rights reserved.

Item Type: Journal Article
Subjects: Q Science > QA Mathematics
Q Science > QH Natural history > QH301 Biology
Divisions: Faculty of Science > Statistics
Library of Congress Subject Headings (LCSH): Bayesian statistical decision theory, Markov processes, Monte Carlo method, Stochastic models, Fishery resources -- Management -- Mathematical models
Journal or Publication Title: Ecological Modelling
Publisher: Elsevier BV
ISSN: 0304-3800
Date: 24 November 2008
Volume: Vol.219
Number: No.1-2
Number of Pages: 17
Page Range: pp. 153-169
Identification Number: 10.1016/j.ecolmodel.2008.08.007
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Restricted or Subscription Access
Funder: Guo jia zi ran ke xue ji jin wei yuan hui (China) [National Natural Science Foundation of China] (NSFC)
Grant number: 10871122 (NSFC)
References: Alvarez, L.H.R., Shepp, L.A., 1998. Optimal harvesting of stochastically fluctuating populations. J. Math. Biol. 37, 155–177. Beddington, J.R., May, R.M., 1977. Harvesting natural population in a randomly fluctuating environment. Science 197, 463–465. Bordy, S., 1945. Bioenergetics and Growth. Reinhold, New York. Braumann, C.A., 2007. Harvesting in a random environment: Itó or Stratonovich calculus? J. Theor. Biol. 244, 424–432. Butler, G., Freedman, H.I., Waltman, P., 1986. Uniformly persistence systems. Proc. Am. Math. Soc. 96, 425–430. Charles-Edwards, D.A., 1979. A model of leaf growth. Ann. Bot. 44, 523–535. Denison, D.G.T., Holmes, C.C., Mallick, B.K., Smith, A.F.M., 2002. Bayesian Methods for Nonlinear Classification and Regression. John Wiley & Sons, Ltd. Durham, G., Gallant, A.R., 2001. Numerical techniques for maximum likelihood estimation of continuous-time diffusion processes. J. Bus. Econ. Stat. 20, 297–316. Chib, S., 1998. Estimation and comparison of multiple change-point models. J. Economet. 86, 221–241. Chin Choy, J.H., Broemeling, L.D., 1980. Some Bayesian inferences for a changing linear model. Technometrics 22, 71–78. Cox, J.C., Ingersoll, J.E., Ross, S.A., 1985. A theory of the term structure of interest rates. Econometrica 53, 385–407. Cromer, T.L., 1988. Harvesting in a seasonal environment. Math. Comput. Model. 10, 445–450. Elerian, O., Chib, S., Shephard, N., 2001. Likelihood inference for discretely observed nonlinear diffusions. Econometrica 69, 959–993. Eraker, B., 2001. MCMC analysis of diffusion models with application to finance. J. Bus. Econ. Stat. 19, 177–191. Fearnhead, P., 2006. Exact and efficient Bayesian inference for multiple change point problems. Stat. Comput. 16, 203–213. Ferrante, L., Bompadre, S., Leone, L., Montanari, M.P., 2005. A stochastic formulation of the Gompertzian growth model for in vitro bactericidal kinetics: parameter estimation and extinction probability. Biometr. J. 47, 309–318. Gamerman, D., Lopes, H.F., 2006. Markov Chain Monto Carlo: Stochastic Simulation for Bayesian Inference, 2nd ed. Taylor & Francis Group, London/New York. Geyer, C.J., 1992. Practical Markov Chain Monte Carlo. Stat. Sci. 7, 473–511. Golec, J., Sathananthan, S., 2003. Stability analysis of a stochastic logistic model. Math. Comput. Model. 38, 585–593. Golightly, A., Wilkinson, D.J., 2006. Bayesian sequential inference for nonlinear multivariate diffusions. Stat. Comput. 16, 323–338. Hurn, A.S., Lindsay, K.A., 1999. Estimating the parameters of stochastic differential equations. Math. Comput. Simul. 48, 373–384. Hutson, V., Schmitt, K., 1992. Permanence and the dynamics of biological systems. Math. Biosci. 111, 1–71. ICES, 2007. http://www.ices.dk/indexfla.asp. Jackson, D.L., 2003. Revisiting sample size and the number of parameter estimated: some support for the N:q hypothesis. Struct. Equat. Model. 10, 128–141. Kline, R.B., 2005. Principle and Practice of Structural Equation Modelling, 2nd ed. Cuilford, New York. Kou, S.C., Kou, S.G., 2004. A diffusion model for growth stocks. Math. Oper. Res. 29, 191–212. Lee, P., 1997. Bayesian Statistics: An Introduction, 2nd ed. Arnold. Lyons, T.J., Zheng, W.A., 1990. On conditional diffusion processes. Proc. R. Soc. Edinb. Sect. A 115, 243–255. Mao, X.R., Marion, G., Renshaw, E., 2002. Environmental Brownian noise suppresses explosions in population dynamics. Stoch. Process. Appl. 97, 95–110. May, R.M., 1973. Stability in randomly fluctuating versus deterministic environments. Am. Nat. 107, 621–650. Murphy, G.I., 1977. Clupeoids. In: Glland, J.A. (Ed.), Fish Population Dynamics. Wiley, New York, pp. 283–308. O’Hagan, A., Forester, 2004. J. Kendall’s Advanced Theory of Statistics, vol. 2B. Bayesian Inference, 2nd ed. Arnold. Pedersen, A.R., 1995. A new approach to maximum likelihood estimation for stochastic differential equations based on discrete observations. Scand. J. Stat. 22, 55–71. Ricciardi, L.M., 1979. On a conjecture concerning population growth in random environment. Biol. Cybern. 32, 95–99. Roberts, G.O., Stramer, O., 2001. On inference for partially observed non-linear diffusion models using the Metropolis– Hastings algorithm. Biometrika 88, 603–621. Ross, J.V., Taimre, T., Pollett, P.K., 2006. On parameter estimation in population models. Theor. Popul. Biol. 70, 498–510. Sanchez, D.A., 1980. Linear age-dependent population growth with seasonal harvesting. J. Math. Biol. 9, 361–368. Solomon, M.E., 1976. Population Dynamics, 2nd ed. Arnold, London. Tang, S.Y., Chen, L.S., 2004. The effect of seasonal harvesting on stage-structured population models. J. Math. Biol. 48, 357–374. Tanner, M.A., Wong, W.H., 1987. The calculation of posterior distributions by data augmentation. J. Am. Stat. Assoc. 82 (398), 528– 540. Xu, C., Boyce, M.S., Daley, D.J., 2005. Harvesting in seasonal environments. J. Math. Biol. 50, 663–682.
URI: http://wrap.warwick.ac.uk/id/eprint/28930

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