Spatial simulations of myxobacterial development
Holmes, Antony, Kalvala, Sara and Whitworth, David E. (2010) Spatial simulations of myxobacterial development. PLoS Computational Biology, Vol.6 (No.2). e1000686. ISSN 1553-734X Official URL: http://dx.doi.org/10.1371/journal.pcbi.1000686 AbstractUnderstanding how relatively simple, single cell bacteria can communicate and coordinate their actions is important for explaining how complex multicellular behaviour can emerge without a central controller. Myxobacteria are particularly interesting in this respect because cells undergo multiple phases of coordinated behaviour during their life-cycle. One of the most fascinating and complex phases is the formation of fruiting bodies—large multicellular aggregates of cells formed in response to starvation. In this article we use evidence from the latest experimental data to construct a computational model explaining how cells can form fruiting bodies. Both in our model and in nature, cells move together in dense swarms, which collide to form aggregation centres. In particular, we show that it is possible for aggregates to form spontaneously where previous models require artificially induced aggregates to start the fruiting process. | Item Type: | Journal Article |
|---|
| Subjects: | Q Science > QR Microbiology |
|---|
| Divisions: | Faculty of Science > Molecular Organisation and Assembly in Cells (MOAC) Faculty of Science > Computer Science |
|---|
| Library of Congress Subject Headings (LCSH): | Myxobacterales -- Research, Bacteria -- Motility -- Mathematical models, Spatial analysis (Statistics), Monte Carlo method |
|---|
| Journal or Publication Title: | PLoS Computational Biology |
|---|
| Publisher: | Public Library of Science |
|---|
| ISSN: | 1553-734X |
|---|
| Date: | 26 February 2010 |
|---|
| Volume: | Vol.6 |
|---|
| Number: | No.2 |
|---|
| Number of Pages: | 13 |
|---|
| Page Range: | e1000686 |
|---|
| Identification Number: | doi:10.1371/journal.pcbi.1000686 |
|---|
| Status: | Peer Reviewed |
|---|
| Access rights to Published version: | Open Access |
|---|
| Funder: | Engineering and Physical Sciences Research Council (EPSRC) |
|---|
| References: | 1. Shapiro J (1998) Thinking about bacterial populations as multicellular
organisms. Annu Rev Microbiol 52: 81–104.
2. McBride M (2001) Bacterial gliding motility: Multiple mechanisms for cell
movement over surfaces. Annu Rev Microbiol 55: 49–75.
3. Wolgemuth C, Hoiczyk E, Kaiser D, Oster G (2002) How myxobacteria glide.
Current Biology 12: 369–377.
4. Søgaard-Anderson L (2004) Cell polarity, intercellular signalling and morphogenetic
cell movements in Myxococcus xanthus. Current Opinion in Microbiology
7: 587–593.
5. Kim S, Kaiser D (1991) C-factor has distinct aggregation and sporulation
thresholds during Myxococcus development. Journal of Bacteriology 173:
1722–1728.
6. Kruse T, Lobedanz S, Berthelsen N, Søgaard-Anderson L (2001) C-signal: a cell
surface-associated morphogen that induces and co-ordinates multicellular
fruiting body morphogenesis and sporulation in Myxococcus xanthus. Molecular
Microbiology 40: 156–168.
7. Kim S, Kaiser D (1990) C-factor: A cell-cell signaling protein required for
fruiting body morphogenesis of M. Xanthus. Cell 61: 19–26.
8. Jelsbak L, Søgaard-Anderson L (2002) Pattern formation by a cell surfaceassociated
morphogen in Myxococcus xanthus. Proc Natl Acad Sci USA 99:
2032–2037.
9. Jelsbak L, Søgaard-Anderson L (1999) The cell surface-associated intercellular csignal
induces behavioral changes in individual Myxococcus xanthus cells during
fruiting body morphogenesis. Proc Natl Acad Sci USA 96: 5031–5036.
10. Wu Y, Kaiser D, Alber M (2009) Periodic reversal of direction allows
myxobacteria to swarm. Proc Natl Acad Sci USA 106: 1222–1227.
11. O’Connor K, Zusman D (1989) Patterns of cellular interactions during fruitingbody
formation in Myxococcus xanthus. Journal of Bacteriology 171: 6013–6024.
12. White D (1984) Structure and function of myxobacteria cells and fruiting bodies.
In: Rosenberg E, ed. Myxobacteria: Development and Cell Interactions,
Springer-Verlag. pp 51–67.
13. Curtis P, Taylor R, Welch R, Shimkets L (2007) Spatial organization of
Myxococcus xanthus during fruiting body formation. Journal of Bacteriology 189:
9126–9130.
14. White D (1993) Myxospore and fruiting body morphogenesis. In: Dworkin M,
Kaiser D, eds. Myxobacteria II, American Society for Microbiology. pp
307–332.
15. Igoshin O, Welch R, Kaiser D, Oster G (2004) Waves and aggregation patterns
in myxobacteria. Proc Natl Acad Sci USA 101: 4256–4261.
16. Grilione P, Pangborn J (1975) Scanning electron microscopy of fruiting body
formation by myxobacteria. Journal of Bacteriology 124: 1558–1565.
17. Kuner J, Kaiser D (1982) Fruiting body morphogenesis in submerged cultures of
Myxococcus xanthus. Journal of Bacteriology 151: 458–461.
18. Sozinova O, Jiang Y, Kaiser D, Alber M (2006) A three-dimensional model of
myxobacterial fruiting-body formation. Proc Natl Acad Sci USA 103:
17255–17259.
19. Sozinova O, Jiang Y, Kaiser D, Alber M (2005) A three-dimensional model of
myxobacterial aggregation by contact-mediated interactions. Proc Natl Acad Sci
USA 102: 11308–11312.
20. Kaiser D, Welch R (2004) Dynamics of fruiting body morphogenesis. Journal of
Bacteriology 186: 919–927.
21. Savill N, Hogeweg P (1996) Modelling morphogenesis: From single cells to
crawling slugs. Journal of Theoretical Biology 184: 229–235.
22. Kaiser D (2003) Coupling cell movement to multicellular development in
myxobacteria. Nature Reviews Microbiology 1: 45–54.
23. Zusman D, Scott A, Yang Z, Kirby J (2007) Chemosensory pathways, motility
and development in Myxococcus xanthus. Nature Reviews Microbiology 5:
862–872.
24. Jelsbak L, Sogaard-Andersen L (2002) Pattern formation by a cell surfaceassociated
morphogen in myxococcus xanthus. Proc Nat Acad Sciences, USA 99:
2032–2037.
25. Metropolis N, Rosenbluth A, Rosenbluth M, Teller A (1953) Equations of state
calculations by fast computing machines. Journal of Chemical Physics 21:
1087–1092.
26. Glazier J, Graner F (1993) Simulation of the differential adhesion driven
rearrangement of biological cells. Physical Review E 47: 2128–2154.
27. Potts R (1952) Some generalized order-disorder transformations. Mathematical
Proceedings of the Cambridge Philosophical Society 48: 106–109.
28. Izaguirre J, Chaturvedi R, Huang C, Cickovski T, Coffland J, et al. (2003)
Compucell, a multi-model framework for simulation of morphogenesis.
Bioinformatics 20: 1129–1137.
29. Wu Y, Jiang Y, Kaiser D, Alber M (2007) Social interactions in myxobacterial
swarming. PLoS Computational Biology 3: 2546–2558.
30. Pelling A, Li Y, Cross S, Castaneda S, Shi W, et al. (2006) Self-organized and
highly ordered domain structures within swarms of Myxococcus xanthus, volume
63. Cell Motil Cytoskeleton.
31. Kaiser D, Dworkin M (2008) From glycerol to the genome. In: Whitworth D, ed.
Myxobacteria: Multicellularity and Differentiation, ASM Press. pp 3–16.
32. Shimkets L, Dworkin M, Reichenbach H (2006) The myxobacteria. In:
Dworkin M, ed. The Prokaryotes: a Handbook on the Biology of Bacteria,
Springer, volume 7. pp 31–115.
33. Dworkin M (1996) Recent advances in the social and developmental biology of
the Myxobacteria. Microbiological Reviews 60: 70–102.
34. Wireman JW, Dworkin M (1977) Developmentally induced autolysis during
fruiting body formation by Myxococcus xanthus. Journal of Bacteriology 129:
796–802.
35. Holmes A, Kalvala S, Whitworth D (2009) Myxobacteria motility: a novel 3D
model of rippling behaviour in Myxococcus xanthus. Communications of the
Systematics and Informatics World Network 6: 65–70.
36. Reichenbach H (1993) Biology of the myxobacteria: Ecology and taxonomy. In:
Dworkin M, Kaiser D, eds. Myxobacteria II, American Society for
Microbiology. pp 13–62.
37. Jelsbak L, Søgaard-Anderson L (2003) Cell behavior and cell-cell communication
during fruiting body morphogenesis in Myxococcus xanthus. Journal of
Microbiological Methods 55: 829–839.
38. Spormann A, Kaiser D (1995) Gliding movements in Myxococcus xanthus. Journal
of Bacteriology 177: 5846–5852.
39. Starruss J, Bley T, Søgaard-Anderson L, Deutsch A (2007) A new mechanism for
collective migration in Myxococcus xanthus. Journal of Statistical Physics 128:
269–286. |
|---|
Data sourced from Thomson Reuters' Web of Knowledge Request changes to a record Repository Staff Only: item control page
|