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Identification of a novel type of spacer element required for imprinting in fission yeast
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Sayrac, Suha, Vengrova, Sonya, Godfrey, Emma L. and Dalgaard, Jacob Z.. (2011) Identification of a novel type of spacer element required for imprinting in fission yeast. PLoS Genetics, Vol.7 (No.3). e1001328. ISSN 1553-7404
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Official URL: http://dx.doi.org/10.1371/journal.pgen.1001328
Abstract
Asymmetrical segregation of differentiated sister chromatids is thought to be important for cellular differentiation in higher eukaryotes. Similarly, in fission yeast, cellular differentiation involves the asymmetrical segregation of a chromosomal imprint. This imprint has been shown to consist of two ribonucleotides that are incorporated into the DNA during laggingstrand synthesis in response to a replication pause, but the underlying mechanism remains unknown. Here we present key novel discoveries important for unravelling this process. Our data show that cis-acting sequences within the mat1 cassette mediate pausing of replication forks at the proximity of the imprinting site, and the results suggest that this pause dictates specific priming at the position of imprinting in a sequence-independent manner. Also, we identify a novel type of cis-acting spacer region important for the imprinting process that affects where subsequent primers are put down after the replication fork is released from the pause. Thus, our data suggest that the imprint is formed by ligation of a not-fullyprocessed Okazaki fragment to the subsequent fragment. The presented work addresses how differentiated sister chromatids are established during DNA replication through the involvement of replication barriers.
| Item Type: | Journal Article |
|---|---|
| Subjects: | Q Science > QH Natural history > QH301 Biology |
| Divisions: | Faculty of Medicine > Warwick Medical School > Biomedical Cell Biology Faculty of Medicine > Warwick Medical School > Clinical Sciences Research Institute (CSRI) Faculty of Medicine > Warwick Medical School |
| Library of Congress Subject Headings (LCSH): | Yeast, Schizosaccharomyces pombe, Chromosome replication, Cell differentiation |
| Journal or Publication Title: | PLoS Genetics |
| Publisher: | Public Library of Science |
| ISSN: | 1553-7404 |
| Date: | 10 March 2011 |
| Volume: | Vol.7 |
| Number: | No.3 |
| Page Range: | e1001328 |
| Identification Number: | 10.1371/journal.pgen.1001328 |
| Status: | Peer Reviewed |
| Publication Status: | Published |
| Access rights to Published version: | Open Access |
| Funder: | Marie Curie Cancer Care |
| References: | 1. Tajbakhsh S (2008) Stem cell identity and template DNA strand segregation. Curr Opin Cell Biol 20: 716–722. 2. Miyata H, Miyata M (1981) Mode of conjugation in homotallic cells of Schizosaccharomyces pombe. J Gen Appl Microbiol 27: 365–371. 3. Egel R, Eie B (1987) Cell lineage asymmetry for Schizosaccharomyces pombe: Unilateral transmission of a high-frequency state of mating-type switching in diploid pedigrees. Curr Genet 12: 429–433. 4. Egel R (1984) The pedigree pattern of mating-type switching in Schizosaccharomyces pombe. Curr Genet 8: 205–210. 5. Klar AJ (1987) Differentiated parental DNA strands confer developmental asymmetry on daughter cells in fission yeast. Nature 326: 466–470. 6. Klar AJ (1990) The developmental fate of fission yeast cells is determined by the pattern of inheritance of parental and grandparental DNA strands. EMBO J 9: 1407–1415. 7. Beach DH (1983) Cell type switching by DNA transposition in fission yeast. Nature 305: 682–687. 8. Kelly M, Burke J, Smith M, Klar A, Beach D (1988) Four mating-type genes control sexual differentiation in the fission yeast. EMBO J 7: 1537–1547. 9. Singh J, Klar AJ (1993) DNA polymerase-alpha is essential for mating-type switching in fission yeast. Nature 361: 271–273. 10. Dalgaard JZ, Klar AJ (1999) Orientation of DNA replication establishes matingtype switching pattern in S. pombe. Nature 400: 181–184. 11. Holmes AM, Kaykov A, Arcangioli B (2005) Molecular and cellular dissection of mating-type switching steps in Schizosaccharomyces pombe. Mol Cell Biol 25: 303–311. 12. Vengrova S, Dalgaard JZ (2004) RNase-sensitive DNA modification(s) initiates S. pombe mating-type switching. Genes Dev 18: 794–804. 13. Kaykov A, Holmes AM, Arcangioli B (2004) Formation, maintenance and consequences of the imprint at the mating-type locus in fission yeast. EMBO J 23: 930–938. 14. Yamada-Inagawa T, Klar AJ, Dalgaard JZ (2007) Schizosaccharomyces pombe switches mating type by the synthesis-dependent strand-annealing mechanism. Genetics 177: 255–265. 15. Arcangioli B, de Lahondes R (2000) Fission yeast switches mating type by a replication-recombination coupled process. EMBO J 19: 1389–1396. 16. Klar AJ, Bonaduce MJ (1993) The mechanism of fission yeast mating-type interconversion: evidence for two types of epigenetically inherited chromosomal imprinted events. Cold Spring Harb Symp Quant Biol 58: 457–465. 17. Vengrova S, Dalgaard JZ (2006) The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides. EMBO Rep 7: 59–65. 18. Nielsen O, Egel R (1989) Mapping the double-strand breaks at the mating-type locus in fission yeast by genomic sequencing. EMBO J 8: 269–276. 19. Arcangioli B (1998) A site- and strand-specific DNA break confers asymmetric switching potential in fission yeast. EMBO J 17: 4503–4510. 20. Kaykov A, Arcangioli B (2004) A programmed strand-specific and modified nick in S. pombe constitutes a novel type of chromosomal imprint. Curr Biol 14: 1924–1928. 21. Egel R, Beach DH, Klar AJ (1984) Genes required for initiation and resolution steps of mating-type switching in fission yeast. Proc Natl Acad Sci U S A 81: 3481–3485. 22. Sommariva E, Pellny TK, Karahan N, Kumar S, Huberman JA, et al. (2005) Schizosaccharomyces pombe Swi1, Swi3, and Hsk1 are components of a novel Sphase response pathway to alkylation damage. Mol Cell Biol 25: 2770–2784. 23. Noguchi E, Noguchi C, Du LL, Russell P (2003) Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1. Mol Cell Biol 23: 7861–7874. 24. Dalgaard JZ, Klar AJ (2000) swi1 and swi3 perform imprinting, pausing, and termination of DNA replication in S. pombe. Cell 102: 745–751. 25. Dalgaard JZ, Klar AJ (2001) A DNA replication-arrest site RTS1 regulates imprinting by determining the direction of replication at mat1 in S. pombe. Genes Dev 15: 2060–2068. 26. Dalgaard JZ, Eydmann T, Koulintchenko M, Sayrac S, Vengrova S, et al. (2009) Random and site-specific replication termination. Methods Mol Biol 521: 35–53. 27. Styrkarsdottir U, Egel R, Nielsen O (1993) The smt-0 mutation which abolishes mating-type switching in fission yeast is a deletion. Curr Genet 23: 184–186. 28. Arcangioli B, Copeland TD, Klar AJ (1994) Sap1, a protein that binds to sequences required for mating-type switching, is essential for viability in Schizosaccharomyces pombe. Mol Cell Biol 14: 2058–2065. 29. Gerbi SA, Bielinsky AK (1997) Replication initiation point mapping. Methods 13: 271–280. 30. Roseaulin L, Yamada Y, Tsutsui Y, Russell P, Iwasaki H, et al. (2008) Mus81 is essential for sister chromatid recombination at broken replication forks. EMBO J 27: 1378–1387. 31. Craven RA, Griffiths DJ, Sheldrick KS, Randall RE, Hagan IM, et al. (1998) Vectors for the expression of tagged proteins in Schizosaccharomyces pombe. Gene 221: 59–68. 32. Eydmann T, Sommariva E, Inagawa T, Mian S, Klar AJ, et al. (2008) Rtf1- mediated eukaryotic site-specific replication termination. Genetics 180: 27–39. 33. Kim SM, Dubey DD, Huberman JA (2003) Early-replicating heterochromatin. Genes Dev 17: 330–335. 34. Vengrova S, Dalgaard JZ (2005) The Schizosaccharomyces pombe imprint—nick or ribonucleotide(s)? Curr Biol : - 15: R326–327; author reply R327. 35. Noguchi E, Noguchi C, McDonald WH, Yates JR, 3rd, Russell P (2004) Swi1 and Swi3 are components of a replication fork protection complex in fission yeast. Mol Cell Biol 24: 8342–8355. 36. Lee JB, Hite RK, Hamdan SM, Xie XS, Richardson CC, et al. (2006) DNA primase acts as a molecular brake in DNA replication. Nature 439: 621–624. 37. Moreno S, Klar A, Nurse P (1991) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194: 795–823. 38. Brewer BJ, Fangman WL (1987) The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51: 463–471. 39. Huberman JA, Spotila LD, Nawotka KA, el-Assouli SM, Davis LR (1987) The in vivo replication origin of the yeast 2 microns plasmid. Cell 51: 473–481. 40. Kiger JA, Jr., Sinsheimer RL (1969) Vegetative lambda DNA. IV. Fractionation of replicating lambda DNA on benzoylated-naphthoylated DEAE cellulose. J Mol Biol 40: 467–490. 41. Ruven HJ, Seelen CM, Lohman PH, Mullenders LH, van Zeeland AA (1994) Efficient synthesis of 32P-labeled single-stranded DNA probes using linear PCR; application of the method for analysis of strand-specific DNA repair. Mutat Res 315: 189–195. 42. Schmitt ME, Brown TA, Trumpower BL (1990) A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18: 3091–3092. 43. Rosen KM, Lamperti ED, Villa-Komaroff L (1990) Optimizing the northern blot procedure. Biotechniques 8: 398–403. |
| URI: | http://wrap.warwick.ac.uk/id/eprint/34580 |
Data sourced from Thomson Reuters' Web of Knowledge
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