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The neutral population model and Bayesian non-parametrics

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Favaro, Stefano, Ruggiero, Matteo, Spanò, Dario and Walker, S. G. (Stephen G.) (2008) The neutral population model and Bayesian non-parametrics. Working Paper. University of Warwick. Centre for Research in Statistical Methodology, Coventry.

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Abstract

Fleming-Viot processes are a wide class of probability-measure-valued diffusions which often arise as large population limits of so-called particle processes. Here we invert the procedure and show that a countable population process can be derived directly from the neutral diffusion model, with no arbitrary assumptions. We study the atomic structure of the neutral diffusion model, and elicit a finite dimensional particle process from the time-dependent random measure, for any chosen population size. The static properties are consequences of the fact that its stationary distribution is the Dirichlet process, and rely on a new representation for it. The dynamics are derived directly from the transition function of the neutral diffusion model.

Item Type: Working or Discussion Paper (Working Paper)
Subjects: Q Science > QA Mathematics
Divisions: Faculty of Science > Statistics
Library of Congress Subject Headings (LCSH): Diffusion processes
Series Name: Working papers
Publisher: University of Warwick. Centre for Research in Statistical Methodology
Place of Publication: Coventry
Date: 2008
Volume: Vol.2008
Number: No.17
Number of Pages: 16
Status: Not Peer Reviewed
Access rights to Published version: Open Access
Funder: Fondazione Cassa di risparmio di Torino (CRT), Italy. Ministero dell'istruzione, dell'università e della ricerca (MIUR), Engineering and Physical Sciences Research Council (EPSRC), University of Warwick. Centre for Research in Statistical Methodology
Grant number: 2006/133449 (MIUR)
References: Blackwell, D. (1973). Discreteness of Fersuson selections. Ann. Statist. 1, 356{358. Blackwell, D. and MacQueen, J.B. (1973). Ferguson distributions via Polya urn schemes. Ann. Statist. 1, 353{355. Donnelly, P. and Kurtz, T.G. (1996). A countable representation of the Fleming- Viot measure-valued diffusion. Ann. Probab. 24, 698{742. Donnelly, P. and Kurtz, T.G. (1999). Genealogical processes for Fleming-Viot models with selection and recombination. Ann. Appl. Probab. 9, 1091{1148. Ethier, S.N. and Griffiths, R.C. (1993). The transition function of a Fleming-Viot process. Ann. Probab. 21, 1571{1590. Ethier, S.N. and Kurtz, T.G. (1993). Fleming-Viot processes in population genetics. SIAM J. Control Optim. 31, 345{386. Ethier, S.N. and Kurtz, T.G. (1994). Convergence to Fleming-Viot processes in the weak atomic topology. Stochastic Process. Appl. 54, 1{27. Ferguson, T.S. (1973). A Bayesian analysis of some nonparametric problems. Ann. Statist. 1, 209{230. Ferguson, T.S. (1974). Prior distributions on spaces of probability measures. Ann. Statist. 2, 615{629. Fleming, W.H. and Viot, M. (1979). Some measure valued Markov processes in population genetics theory. Indiana Univ. Math. J. 28, 817{843. Lo, A.Y. (1984). On a class of Bayesian nonparametric estimates I. Density estimates. Ann. Statist. 12, 351{357. Ruggiero, M. and Walker, S.G. (2008). Bayesian nonparametric construction of the Fleming-Viot process with fertility selection. To appear in Statist. Sinica. Tavare, S. (1984). Line-of-descent and genealogical processes, and their applications in population genetic models. Theoret. Population Biol. 26, 119{164. Walker, S.G., Hatjispyros S.J. and Nicoleris, T. (2007). The Fleming-Viot process and Bayesian nonparametrics. Ann. Appl. Probab. 17, 67{80.
URI: http://wrap.warwick.ac.uk/id/eprint/35490

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