Abe M, Takahashi T, Komeda Y (2001) Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein. The Plant Journal 26, 487-494.
Bassett, CL, Callahan, AM, Artlip, TS, Scorza, R and Srinivasan, C (2007) A minimal peach type II chlorophyll a/b-binding protein promoter retains tissue-specificity and light regulation in tomato. BMC Biotechnology 7, 47
Benfey PN, Takatsuji H, Ren L, Shah DM, Chua NH (1990) Sequence requirements of the 5-enolpyruvylshikimate-3-phosphate synthase 5΄-upstream region for tissue-specific expression in flowers and seedlings. Plant Cell 2, 849-856.
Bird CR, Smith CJS, Ray JA, Moureau P, Bevan MW, Bird AS, Hughes S, Morris PC, Grierson D, Schuch W (1988) The tomato polygalacturonase gene and ripening-specific expression in transgenic plants. Plant Molecular Biology 11, 651-662.
Bradford, M (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry. 72, 248-254.
Bucher M (2002) Molecular Root Bioengineering. In Y Waisel, A Eshel, U Kafkafi, eds, Plant Roots. The Hidden Half, Third Edition pp 279-294 (Marcel Dekke, Inc.: New York)
Bucher M, Brunner S, Zimmermann P, Zardi GI, Amrhein N, Willmitzer L, Riesmeier JW (2002) The expression of an extensin-like protein correlates with cellular tip growth in tomato. Plant Physiology 128, 911-923.
Bucher M, Schroeer B, Willmitzer L, Riesmeier JW (1997) Two genes encoding extensin-like proteins are predominantly expressed in tomato root hair cells. Plant Molecular Biology 35, 497-508.
Butler ED, Gallagher TF (2000) Characterization of auxin-induced ARRO-1 expression in the primary root of Malus domestica. Journal of Experimental Botany 51, 1765 - 1766
Cardon ZG, Gage DJ (2006) Resource exchange in the rhizosphere: Molecular tools and the microbial perspective. Annual Review of Ecology, Evolution and Systematics 37, 459-488.
Chan YL, Prasad V, Sanjaya, Chn KH, Liu PC, Chan MT, Cheng CP (2005) Transgenic tomato plants expressing an Arabidopsis thionin (Thi2.1) driven by fruit-inactive promoter battle against phytopathogenic attack. Planta 221, 386-393.
Chen F, Ro D-K, Petri J, Gershenzon J, Bohlmann J, Pichersky E, Tholl D (2004) Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Plant Physiology 135, 1956-1966
Diatchenko L, Lau YC, Campbell AP, Chenchik A, Moqadam F, Huang B, Lukyanov S, Lukyanov K, Gurskaya N, Sverdlov ED, Siebert PD (1996) Suppression subtractive
hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proceedings of the National Academy of Science USA 93, 6025-6030
Elmayan T, Tepfer M (1995) Evaluation in tobacco of the organ specificity and strength of the rolD promoter, domain A of the 35S promoter and the 35S2 promoter. Transgenic Research 4, 388-396
Fester T, Schmidt D, Lohse S, Walter MH, Giuliano G, Bramley PM, Fraser PD, Hause B, Strack D (2002) Stimulation of carotenoid metabolism in arbuscular mycorrhizal roots. Planta 216, 148-154.
Garoosi GA, Salter MG, Caddick MX and Tomsett AB (2005) Characterisation of the ethanol-inducible alc gene expression system in tomato. Journal of Experimental Botany 56, 1635-1642.
Giritch A, Ganal M, Stephan UW, Baumlein H (1998) Structure, expression and chromosomal localisation of the metallothionein-like gene family of tomato. Plant Molecular Biology 37, 701-714.
Giritch A, Herbik A, Balzer HJ, Ganal M, (1997). A root-specific iron-regulated gene of tomato encodes a lysyl-tRNA-synthetase-like protein. European Journal of Biochemistry 244, 310-317.
Gittins JR, Hiles ER, Pellny TK, Biricolti S, James DJ (2001) The Brassica napus extA promoter: a novel alternative promoter to CaMV 35S for directing transgene expression to young stem tissues and load bearing regions of transgenic apple trees (Malus pumila Mill). Molecular Breeding 7, 51–62.
Grichko VP, Glick BR (2001) Flooding tolerance of transgenic tomato plants expressing the bacterial enzyme ACC deaminase controlled by the 35S, rolD or PRB-1b promoter. Plant Physiology and Biochemistry 39, 19-25.
Gubler F, Jacobsen JV (1995) Gibberellin-responsive elements in the promoter of a barley high pl- α-amylase gene. Plant Cell 4, 1435-1441.
Hagen G, Guilfoyle T (2002) Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Molecular Biology 49, 373-385.
Hans J, Hause, B, Strack D, Walter MH (2004) Cloning, characterization, and immunolocalization of a mycorrhiza-inducible 1-deoxy-D-xylulose 5-phosphate reductoisomerase in arbuscule-containing cells of maize. Plant Physiology 134, 614-624.
Hausinger RP (2004). Fe(II)/α-ketoglutarate dependent hydroxylases and related enzymes. Critical Reviews in Biochemistry and Molecular Biology 39, 21-68.
Hertig C, Rebmann G, Bull J, Mauch F, Dudler R (1991) Sequence and tissue-specific expression of a putative peroxidase gene from wheat (Triticum aestivum L.). Plant Molecular Biology 16, 171-174.
Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database 1999. Nucleic Acids Research 27, 297 - 300.
Hudson ME, Quail PH (2003) identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data. Plant Physiology 133, 1605-1616.
Itzhaki H, Maxson JM, Woodson WR (1994) An ethylene-responsive enhancer element is involved in the senescence-related expression of the carnation glutathione-S-transferase (GST1) gene. Proceedings of the National Academy of Sciences USA 91, 8925–8929
Jefferson RA, Kavanagh TA, Bevan, MW (1987) GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO Journal 6, 3901–3907.
Karimi M, Inze D Depicker A (2002) GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends in Plant Science 7, 193-195.
Keller B, Baumgartner C (1991) Vascular-specific expression of the bean grp 1.8 gene is negatively regulated. Plant Cell 3, 1051-1061.
Klinedinst S, Pascuzzi P, Redman J, Desai M, Arias J (2000) A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Molecular Biology 42, 679-688.
Koyama T, Ono T, Shimizu M, Jinbo T, Mizuno R, Tomita K, Mitsukawa N, Kawazu T, Kimura T, Ohmiya K, Sakka K (2005) Promoter of Arabidopsis thaliana phosphate transporter gene drives root-specific expression of transgene in rice. Journal of Bioscience and Bioengineering 99, 38-42.
Köck M, Stenzel I, Zimmer A (2006) Tissue-specific expression of tomato ribonuclease LX during phosphate starvation-induced root growth. Journal of Experimental Botany 57, 3717-3726.
Krasnyanski SF, Sandu J, Domier LL, Buetow DE and Korbani SS (2001) Effect of an enhanced CAMV 35S promoter and a fruit-specific promoter on UIDA gene expression in transgenic tomato plants. In Vitro Cellular & Developmental Biology - Plant 37, 427-433.
Leidl BE, McCormick S, Mutschlerm MA (1993) A clearing technique for histochemical location of GUS activity in pollen tubes and ovules of Lycopersicon. Plant Molecular Biology Reports 11, 194-201.
Léon-Kloosterziel KM, Verhagen BW, Keurentjes JJ, Van Pelt JA, Rep M, Van Loon LC, Pieterse CM (2005) Colonization of the Arabidopsis rhizosphere by fluorescent Pseudomonas spp. activates a root-specific, ethylene-responsive PR-5 gene in the vascular bundle. Plant Molecular Biology 57, 731-748.
Liang M, Haroldsen V, Cai X, Wu Y (2006) Expression of a putative laccase gene, ZmLAC1, in maize primary roots under stress. Plant, Cell and Environment 29, 746-753.
Marin E, Divol F, Bechtold N, Vavasseur A, Nussaume L, Forestier C (2006) Molecular characterization of three Arabidopsis soluble ABC proteins which expression is induced by sugars. Plant Science 171, 84-90.
Matsuda J, Okabe S, Hashimoto T, Yamada Y (1991) Molecular cloning of hyoscyamine 6 β-hydroxylase, a 2- oxoglutarate- dependent dioxygenase, from cultured roots of Hyoscyamus niger. Journal of Biological Chemistry 266: 9460 – 9464.
Mudge SR, Rae AL, Diatloff E, Smith FW (2002) Expression analysis suggests novel roles for members of the Pht1 family of phosphate transporters in Arabidopsis. The Plant Journal 31, 341-353.
Mudge SR, Smith FW, Richardson AE (2003) Root-specific and phosphate regulated expression of phytase under the control of a phosphate transporter promoter enables Arabidopsis to grow on phytate as a sole P source. Plant Science 165, 871-878.
Okubara PA, Paulitz TC (2005) Root defense responses to fungal pathogens: A molecular perspective. Plant and Soil 274, 215-226
Phillips AL, Ward DA, Uknes S, Appleford N, Lange T, Huttly AK, Gaskin P, Graebe JE, Hedden P (1995) Isolation and expression of three gibberellin 20-oxidase cDNA clones from Arabidopsis. Plant Physiology 108: 1049-1057.
Prescott, AG, John, P (1996). Dioxygenases: molecular structure and role in plant metabolism. Annual Review of Plant Physiology and Plant Molecular Biology 47, 245-271.
Prescott AG, Lloyd MD (2000) The iron(II) and 2-oxoacid-dependent dioxygenases and their role in metabolism. Natural Product Reports 17, 367-383.
Radi A, Dina P, Guy A (2006) Expression of sarcotoxin IA gene via a root-specific tob promoter enhanced host resistance against parasitic weeds in tomato plants. Plant Cell Reports 25, 297-303.
Ro D, Ehlting J, Keeling CI, Lin R, Mattheus N, Bohlmann J (2006) Microarray expression profiling and functional characterization of AtTPS genes: Duplicated Arabidopsis thaliana sesquiterpene synthase genes At4g13280 and At4g13300 encode root-specific and wound-inducible (Z)-γ-bisabolene synthases. Archives of Biochemistry and Biophysics 448, 104-116.
Saslowsky D, Winkel-Shirley, B (2001) Localisation of flavonoid enzymes in Arabidopsis roots. The Plant Journal 27, 37-48.
Sobeih WY, Dodd IC, Bacon MA, Grierson D, Davies WJ (2004) Long-distance signals regulating stomatal conductance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying. Journal of Experimental Botany 55, 2353-2363.
Subramanian S, Hu X, Lu G, Odelland JT, Yu O (2004) The promoters of two isoflavone synthase genes respond differentially to nodulation and defence signals in transgenic soybean roots. Plant Molecular Biology 54, 623-639.
Suzuki H, Fowler TJ, Tierney ML (1993) Deletion analysis and localization of SbPRP1, a soybean cell wall protein gene, in roots of transgenic tobacco and cowpea. Plant Molecular Biology 21, 109-119.
Tang X, Wang H, Brandt AS, Woodson WR (1993) Organisation and structure of the 1-aminocylcopropane-1-carboxylate oxidase gene family from Petunia hybrida. Plant Molecular Biology 23, 1151-1164.
Thompson AJ, Corlett JE (1995). mRNA levels of four tomato (Lycopersicon esculentum Mill.L) genes related to fluctuating plant and soil water status. Plant, Cell and Environment 18, 773-80.
Tirajoh A, Aung TST, Byun McKay A, Plant AL (2005) Stress-responsive -dioxygenase expression in tomato roots. Journal of Experimental Botany 56, 713-723.
Vaughan SP, James DJ, Lindsey K, Massiah AJ (2006) Characterization of FaRB7, a near root-specific gene from strawberry (Fragaria x ananassa Duch.) and promoter
activity analysis in homologous and heterologous hosts. Journal of Experimental Botany 57, 3901-3910.
von Schweinichen C, Büttner M (2005) Expression of a plant cell wall invertase in roots of Arabidopsis leads to early flowering and an increase in whole plant biomass. Plant Biology 7, 469-475.
White PJ, Broadley MR, Hammond JP, Thompson AJ (2005) Optimising the potato root system for phosphorous and water acquisition in low-input growing systems. Aspects of Applied Biology 73, 111-118.
Xiao K, Liu J, Dewbre G, Harrison M, Wang ZY (2006) Isolation and characterization of root-specific phosphate transporter promoters from Medicago truncatula. Plant Biology 8, 439-449.
Xu W, Purugganan MM, Polisensky DH, Antiosiewicz, Fry SC, Braam J (1995). Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycolase. The Plant Cell 7, 1555-1567.
Yamamoto YT, Taylor CG, Acedo GN, Cheng C, Conkling MA (1991) Characterization of cis-acting sequences regulating root-specific gene expression in tobacco. Plant Cell 3, 371-382.
Yoshimoto N, Takahashi H, Smith FW, Yamaya T, Saito K (2002) Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots. Plant Journal 29, 465-473.
Zhang P, Bohl-Zenger S, Puonti-Kaerlas J, Potrykus I, Gruissem W (2003) Two cassava promoters related to vascular expression and storage root formation. Planta 218, 192-203.
Zhang Z, Gurr SJ (2000) Walking into the unknown: a `step down' PCR-based technique leading to the direct sequence analysis of flanking genomic DNA. Gene 253, 145-150.