Skip to content Skip to navigation
University of Warwick
  • Study
  • |
  • Research
  • |
  • Business
  • |
  • Alumni
  • |
  • News
  • |
  • About

University of Warwick
Publications service & WRAP

Highlight your research

  • WRAP
    • Home
    • Search WRAP
    • Browse by Warwick Author
    • Browse WRAP by Year
    • Browse WRAP by Subject
    • Browse WRAP by Department
    • Browse WRAP by Funder
    • Browse Theses by Department
  • Publications Service
    • Home
    • Search Publications Service
    • Browse by Warwick Author
    • Browse Publications service by Year
    • Browse Publications service by Subject
    • Browse Publications service by Department
    • Browse Publications service by Funder
  • Statistics
  • Help & Advice
University of Warwick

The Library

  • Login

Using gaussian-process regression for meta-analytic neuroimaging inference based on sparse observations

Tools
- Tools
+ Tools

Salimi-Khorshidi, Gholamreza, Nichols, Thomas E., Smith, Stephen M. and Woolrich, Mark W.. (2011) Using gaussian-process regression for meta-analytic neuroimaging inference based on sparse observations. IEEE Transactions on Medical Imaging, Vol.30 (No.7). pp. 1401-1416. ISSN 0278-0062

Full text not available from this repository.
Official URL: http://dx.doi.org/10.1109/TMI.2011.2122341

Abstract

The purpose of neuroimaging meta-analysis is to localize the brain regions that are activated consistently in response to a certain intervention. As a commonly used technique, current coordinate-based meta-analyses (CBMA) of neuroimaging studies utilize relatively sparse information from published studies, typically only using (x,y,z) coordinates of the activation peaks. Such CBMA methods have several limitations. First, there is no way to jointly incorporate deactivation information when available, which has been shown to result in an inaccurate statistic image when assessing a difference contrast. Second, the scale of a kernel reflecting spatial uncertainty must be set without taking the effect size (e.g., Z-stat) into account. To address these problems, we employ Gaussian-process regression (GPR), explicitly estimating the unobserved statistic image given the sparse peak activation “coordinate” and “standardized effect-size estimate” data. In particular, our model allows estimation of effect size at each voxel, something existing CBMA methods cannot produce. Our results show that GPR outperforms existing CBMA techniques and is capable of more accurately reproducing the (usually unavailable) full-image analysis results.

Item Type: Journal Article
Subjects: Q Science > QA Mathematics
R Medicine > R Medicine (General)
R Medicine > RC Internal medicine > RC0321 Neuroscience. Biological psychiatry. Neuropsychiatry
Divisions: Faculty of Science > Statistics
Faculty of Science > WMG (Formerly the Warwick Manufacturing Group)
Library of Congress Subject Headings (LCSH): Gaussian processes, Brain -- Imaging, Meta-analysis, Bayesian statistical decision theory
Journal or Publication Title: IEEE Transactions on Medical Imaging
Publisher: IEEE
ISSN: 0278-0062
Date: July 2011
Volume: Vol.30
Number: No.7
Number of Pages: 16
Page Range: pp. 1401-1416
Identification Number: 10.1109/TMI.2011.2122341
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Restricted or Subscription Access
Funder: Research Councils UK (RCUK), GlaxoSmithKline (GSK)
References: [1] A. Sutton, D. Jones, K. Abrams, T. Sheldon, and F. Song, Methods for Meta-analysis in Medical Research. London: John Wiley, 2000. [2] N. Lazar, B. Luna, J. A. Sweeney, and W. F. Eddy, “Combining brains: A survey of methods for statistical pooling of information,” NeuroImage, vol. 16, no. 2, pp. 538–50, 2002. [3] G. Salimi-Khorshidi, S. Smith, J. Keltner, T. D. Wager, and T. E. Nichols, “Meta-analysis of neuroimaging data: A comparison of image-based and coordinate-based pooling of studies,” NeuroImage, vol. 45, no. 3, pp. 810–23, Apr. 2009a. [4] C. F. Beckmann, M. Jenkinson, and S. M. Smith, “General multilevel linear modeling for group analysis in fMRI,” NeuroImage, vol. 20, no. 2, pp. 1052–63, 2003. [5] M. W.Woolrich, T. E. Behrens, C. F. Beckmann, M. Jenkinson, and S. M. Smith, “Multilevel linear modelling for fMRI group analysis using Bayesian inference,” NeuroImage, vol. 21, no. 4, pp. 1732–47, 2004. [6] A. Laird, J. Lancaster, and P. T. Fox, “Brainmap: The social evolution of a functional neuroimaging database,” Neuroinformatics, vol. 3, pp. 65–78, 2005. [7] P. Turkeltaub, G. Eden, K. Jones, and T. A. T. Zeffiro, “Meta-analysis of the functional neuroanatomy of single-word reading: Method and validation,” NeuroImage, vol. 16, no. 3.1, pp. 765–80, 2002. [8] T. D. Wager, J. Jonides, and S. Reading, “Neuroimaging studies of shifting attention: A meta-analysis,” NeuroImage, vol. 22, no. 4, pp. 1679–93, 2004. [9] T. D.Wager, M. Lindquist, and L. Kapla, “Meta-analysis of functional neuroimaging data: Current and future directions,” Soc Cogn Affect Neurosci, vol. 2, no. 2, pp. 150–158, 2007. [10] S. B. Eickhoff, A. R. Laird, C. Grefkes, L. E.Wang, K. Zilles, and P. T. Fox, “Coordinate-based activation likelihood estimation meta-analysis of neuroimaging data: A random-effects approach based on empirical estimates of spatial uncertainty,” Hum Brain Mapp, 2009. [11] J. Neumann, D. Cramon, and G. Lohmann, “Model-based clustering of meta-analytic functional imaging data,” Hum Brain Mapp, vol. 29, no. 2, pp. 177–92, 2008. [12] S. G. Costafreda, A. S. David, and M. J. Brammer, “A parametric approach to voxel-based meta-analysis,” NeuroImage, vol. 46, no. 1, pp. 115–22, May 2009. [13] C. Rasmussen and C. Williams, Gaussian Processes for Machine Learning. : The MIT Press, 2006. [14] M. Stein, Statistical Interpolation of Spatial Data: Some Theory for Kriging. New York: Springer, 1999. [15] A. Groves, M. Chappell, and M. W. Woolrich, “Combined spatial and non-spatial prior for inference on MRI time-series,” NeuroImage, vol. 45, pp. 795–809, 2009. [16] J. Copas and J. Shi, “A sensitivity analysis for publication bias in systematic reviews,” Stat Methods Med Res, vol. 10, pp. 251–265, 2001. [17] S. Smith, P. R. Bannister, C. Beckman, M. Brady, S. Clare, D. Flitney, P. Hansen, M. Jenkinson, D. Leibovici, B. Ripley, M. Woolrich, and J. Zhang, “FSL: New tools for functional and structural brain image analysis,” NeuroImage, vol. 13, no. 6, pp. 249–249, 2001. [18] M. Jenkinson, P. Bannister, M. Brady, and S. Smith, “Improved optimization for the robust and accurate linear registration and motion correction of brain images,” NeuroImage, vol. 17, no. 2, pp. 825–41, 2002. [19] M. W. Woolrich, B. D. Ripley, M. Brady, and S. M. Smith, “Temporal autocorrelation in univariate linear modeling of FMRI data,” NeuroImage, vol. 14, no. 6, pp. 1370–86, 2001. [20] M. Jenkinson and S. Smith, “A global optimisation method for robust affine registration of brain images,” Med Image Anal, vol. 5, no. 2, pp. 143–56, 2001. [21] L. Dice, “Measures of the amount of ecologic association between species,” Ecology, vol. 26, no. 3, pp. 297–302, 1945. [22] S. M. Smith and T. E. Nichols, “Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference,” NeuroImage, vol. 44, no. 1, pp. 83–98, 2009. [23] P. Bunch, J. Hamilton, G. Sanderson, and J. Hamilton, “A free response approach to the measurement and characterization of radiographic observer performance,” J. Appl. Photogr. Eng, vol. 4, pp. 166–172, 1978. [24] G. Salimi-Khorshidi, S. Smith, and T. E. Nichols, “Bias and heterogeneity in neuroimaging meta-analysis,” in 15th Annual Meeting of the Organization for Human Brain Mapping Abstracts Online, 2009, vol. SA-PM, p. 406. [25] F. A. Nielsen, “Visualizing data mining results with the brede tools,” Frontiers in Neuroinformatics, vol. 3, no. 26, 2009. [26] K. L. Phan, T. Wager, S. F. Taylor, and I. Liberzon, “Functional neuroanatomy of emotion: A meta-analysis of emotion activation studies in PET and fMRI,” NeuroImage, vol. 16, no. 2, pp. 331–48, Jun. 2002. [27] F. A. Nielsen and L. K. Hansen, “Modeling of activation data in the brainmap database: Detection of outliers,” Hum Brain Mapp, vol. 15, no. 3, pp. 146–56, 2002. [28] F. Nielsen and L. K. Hansen, “Finding related functional neuroimaging volumes,” Artif Intell Med, vol. 30, no. 2, pp. 141–51, 2004.
URI: http://wrap.warwick.ac.uk/id/eprint/38161

Data sourced from Thomson Reuters' Web of Knowledge

Request changes to a record

Actions (login required)

View Item View Item
twitter

Email us: publications@warwick.ac.uk
Contact Details
About Us