Aronson RB, Precht WF (2006) Conservation, precaution, and Caribbean reefs. Coral Reefs 25:441-450
Ateweberhan M, McClanahan TR (2010) Relationship between historical sea-surface temperature variability and climate changeinduced
coral mortality in the western Indian Ocean. Mar Pollut Bull 60:964–970
Baker AC, Glynn PW, Riegl B (2008) Climate change and coral reef bleaching: an ecological assessment of the long-term impacts,
recovery trends and future outlooks. . Estuar Coast Shelf Sci 80:435-471
Bell JD, Galzin R (1984) Influence of live coral cover on coral-reef fish communities. Mar Ecol Prog Ser 15:265-274
Bellwood DR, Hughes TP, Folke C, Nystrom M (2004) Confronting the coral reef crisis. Nature 429:827-832
Bruno JF, Selig ER (2007) Regional decline of coral cover in the Indo-Pacific: timing, extent, and subregional comparisons. PLoS
One 2:e711
Carleton JH, Done TJ (1995) Quantitative video sampling of coral reef benthos: large-scale application. Coral Reefs 14:35-46
Carpenter KE, Abrar M, Aeby G, Aronson RB, Banks S, Bruckner A, Chiriboga A, Cortes J, Delbeek JC, DeVantier L (2008) Onethird
of reef-building corals face elevated extinction risk from climate change and local impacts. Science 321:560-563
Done TJ (1992) Phase shifts in coral reef communities and their ecological significance. Hydrobiologia 247:121-132
Edinger EN, Jompa J, Limmon GV, Widjatmoko W, Risk MJ (1998) Reef degradation and coral biodiversity in Indonesia: effects of
land-based pollution, destructive fishing practices and changes over time. Mar Pollut Bull 36:617-630
Gardner TA, Côté IM, Gill JA, Grant A, Watkinson AR (2003) Long-term region-wide declines in Caribbean corals. Science 301:958-
960
Gardner TA, Côté IM, Gill JA, Grant A, Watkinson AR (2005) Hurricanes and Caribbean coral reefs: impacts, recovery patterns, and
role in long-term decline. Ecology 86:174-184
Garpe KC, Yahya SAS, Lindahl U, Ohman MC (2006) Long-term effects of the 1998 coral bleaching event on reef fish assemblages.
Mar Ecol Prog Ser 315:237-247
Glynn PW, Mate JL, Baker AC, Calderon MO (2001) Coral bleaching and mortality in panama and ecuador during the 19971998 El
NinoSouthern Oscillation Event: spatial/temporal patterns and comparisons with the 1982-1983 event. Bull Mar Sci 69:79-109
Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Bijoux J, Robinson J (2006) Dynamic fragility of oceanic coral reef ecosystems.
Proc Natl Acad Sci USA 103:8425-8429
Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Robinson JAN, Bijoux JP, Daw T (2007) Lag effects in the impacts of mass
coral bleaching on coral reef fish, fisheries, and ecosystems. Conserv Biol 21:1291-1300
Graham NAJ, Chabanet P, Evans RD, Jennings S, Letourneur Y, MacNeil MA, McClanahan TR, Öhman MC, Polunin NVC, Wilson
SK (2011) Extinction vulnerability of coral reef fishes. Ecol Lett doi: 10.1111/j.1461-0248.2011.01592.x
Graham NAJ, McClanahan TR, MacNeil MA, Wilson SK, Polunin NVC, Jennings S, Chabanet P, Clark S, Spalding MD, Letourneur
Y, Bigot L, Galzin R, Öhman MC, Garpe KC, Alasdair JE, Sheppard CRC (2008) Climate warming, Marine Protected Areas
and the ocean-scale integrity of coral reef ecosystems. PlosONE 3(8): e3039
Hastings A (1980) Disturbance, coexistence, history, and competition for space. Theor Popul Biol 18: 363-373
Hoegh-Guldberg O (1999) Climate change, coral bleaching and the future of the world's coral reefs. Mar Freshw Res 50:839-866
Hoegh-Guldberg O, Mumby PJ, Hooten AJ, Steneck RS, Greenfield P, Gomez E, Harvell CD, Sale PF, Edwards AJ, Caldeira K
(2007) Coral reefs under rapid climate change and ocean acidification. Science 318:1737-1742
Hughes TP, Ayre D, Connell JH (1992) The evolutionary ecology of corals. Trend Ecol Evol 7: 292-295
Hughes TP, Graham NAJ, Jackson JBC, Mumby PJ, Steneck RS (2010) Rising to the challenge of sustaining coral reef resilience.
Trends Ecol Evol 25:633-642
Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, Folke C, Grosberg R, Hoegh-Guldberg O, Jackson JBC, Kleypas J,
Lough JM, Marshall P, Nystrom M, Palumbi S, Pandolfi JM, Rosen B, Roughgarden J (2003) Climate change, human impacts,
and the resilience of coral reefs. Science 301:929-933
Idjadi JA, Edmunds PJ (2006) Scleractinian corals as facilitators for other invertebrates on a Caribbean reef. Mar Ecol Prog
Ser319:117-127
Jones GP, McCormick MI, Srinivasan M, Eagle JV (2004) Coral decline threatens fish biodiversity in marine reserves. Proc Natl Acad
Sci USA 101:8251-8258
Lindén O, Sporrong N (1999) Coral reef degradation in the Indian Ocean: Status reports and project presentations 1999. CORDIO
Linden O, Souter D, Wilhelmsson D, Obura D (2002) Coral reef degradation in the Indian Ocean: status report 2002
http://cmsdata.iucn.org/downloads/cordio_status_report_2002.pdf
Maina J, Venus V, McClanahan TR, Ateweberhan M (2008) Modelling susceptibility of coral reefs to environmental stress using
remote sensing data and GIS models. Ecol Model 212:180-199
Maynard JA, Anthony KRN, Marshall PA, Masiri I (2008) Major bleaching events can lead to increased thermal tolerance in corals.
Mar Biol 155:173-182
McClanahan TR (2008) Response of the coral reef benthos and herbivory to fishery closure management and the 1998 ENSO
disturbance. Oecologia 155:169–177
McClanahan TR, Maina J (2003) Response of coral assemblages to the interaction between natural temperature variation and rare
warm-water events. Ecosystems 6:551-563
McClanahan T, Muthiga N, Mangi S (2001) Coral and algal changes after the 1998 coral bleaching: interaction with reef management
and herbivores on Kenyan reefs. Coral Reefs 19:380-391
McClanahan T, Polunin N, Done T (2002) Ecological states and the resilience of coral reefs. Conserv Ecol 6:18
McClanahan TR, Baird AH, Marshall PA, Toscano MA (2004) Comparing bleaching and mortality responses of hard corals between
southern Kenya and the Great Barrier Reef, Australia. Mar Pollut Bull 48:327-335
McClanahan TR, Maina J, Moothien Pillay R, Baker AC (2005) Effects of geography, taxa, water flow, and temperature variation on
coral bleaching intensity in Mauritius. Mar Ecol Prog Ser 298:131-142
McClanahan TR, Ateweberhan M, Muhando C, Maina J, Mohammed SM (2007a) Effects of climate and seawater temperature
variation on coral bleaching and mortality. Ecol Monogr 77:503-525
McClanahan TR, Ateweberhan M, Sebastian CR, Graham NAJ, Wilson SK, Bruggemann H, Guillaume M (2007b) Western Indian
Ocean coral communities, bleaching responses, and susceptibility to extinction. Mar Ecol Prog Ser 337:1–13
McClanahan TR, Ateweberhan M, Ruiz Sebastian C, Graham NAJ, Wilson SK, Bruggemann JH, Guillaume MMM (2007c)
Predictability of coral bleaching from synoptic satellite and in situ temperature observations. Coral Reefs 26:695-701
Mohamed SM, Muhando C, Machano H (2002) Assessment of coral reef degradation in Tanzania; Results of Coral Reef Monitoring
1999-2002. In: Linden O, Souter D, Wilhelmsson D, Obura D (eds) Coral reef degradation in the Indian Ocean, status report
2002. CORDIO, Kalmar, Sweden, pp21-30
Muhando CA, Mohammed MS (2002) Coral reef benthos and fisheries in Tanzania before and after the 1998 bleaching and mortality
event. Western Indian Ocean. J Mar Sci 1: 43–52,
Mumby PJ, Hastings A, Edwards HJ (2007) Thresholds and the resilience of Caribbean coral reefs. Nature 450:98-101
Norström AV, Nyström M, Lokrantz J, Folke C (2008) Alternative states on coral reefs: beyond coral-macroalgal phase shifts. Mar
Ecol Prog Ser 376:295-306
Nyström M, Folke C, Moberg F (2000) Coral reef disturbance and resilience in a human-dominated environment. Trends Ecol Evol
15:413-417
Obura DO (2001) Can differential bleaching and mortality among coral species offer useful indicators for assessment and
management of reefs under stress? Bull Mar Sci 69:421-442
Obura DO (2005) Resilience and climate change: lessons from coral reefs and bleaching in Western Indian Ocean. Estuar Coast Shelf
Sci 63:353-372
Podesta GP, Glynn PW (2001) The 1997-98 El Nino event in Panama and Galapagos: an update of thermal stress indices relative to
coral bleaching. Bull Mar Sci 69:43-59
Pratchett MS, Munday PL, Wilson SK, Graham NAJ, Cinner JE, Bellwood DR, Jones GP, Polunin NVC, McClanahan TR (2008)
Effects of climate-induced coral bleaching on coral-reef fishes- ecological and economic consequences. Oceanogr Mar Biol
Annu Rev 46:251-296
Sandin SA, Smith JE, DeMartini EE, Dinsdale EA, Donner SD, Friedlander AM, Konotchick T, Malay M, Maragos JE, Obura D,
Pantos O, Paulay G, Richie M, Rohwer F, Schroeder RE, Walsh S, Jackson JBC, Knowlton N, Sala E (2008) Baselines and
degradation of coral reefs in the northern Line Islands. PLoS ONE 3:e1548
Scheer G (1974) Investigation of coral reefs at Rasdu Atoll in the Maldives with the quadrat method according to phytosociology.
Proc 2nd Coral Reef Symp 2:655–670
Schutte V, Selig ER, Bruno JF (2010) Regional spatio-temporal trends in Caribbean coral reef benthic communities. Mar Ecol Prog
Ser 402:115-122.
Selig ER, Bruno JF (2010) A global analysis of the effectiveness of Marine Protected Areas in preventing coral loss. PLoS One
5:e9278
Sheppard C, Al-Husiani M, Al-Jamali F, Al-Yamani F, Baldwin R, Bishop J, Benzoni F, Dutrieux E, Dulvy NK, Durvasula SRV,
Jones DA, Loughland R, Medio D, Nithyanandan M, Pillingm GM, Polikarpov I, Price ARG, Purkis S, Riegl B, Saburova M,
Namin KS, Taylor O, Simon Wilson d KZ (2010) The Gulf: A young sea in decline. Mar Pollut Bull 60:13-38
Sheppard CRC (1999) Changes in coral cover on reefs of Chagos over eighteen years. In: Sheppard CRC, Seaward MRD (eds)
Ecology of the Chagos Archipelago. Westbury Publishing, Great Britain, pp91-100
Sheppard CRC (2003) Predicted recurrences of mass coral mortality in the Indian Ocean. Nature 425:294-297
Sheppard CRC, Harris A, Sheppard ALS (2008) Archipelago-wide coral recovery patterns since 1998 in the Chagos Archipelago,
central Indian Ocean. Mar Ecol Prog Ser 362:109-117
Souter D, Linden O (eds) (2005) Coral reef degradation in the Indian Ocean. Status report 2005. CORDIO, Univ. of Kalmar, Sweden
Souter D, Obura D, Lindén O (2000) Coral reef degradation in the Indian Ocean. Status report 2000. CORDIO, SAREC Marine
Science Program, Stockholm, Sweden
Spencer T, Teleki KA, Bradshaw C, Spalding MD (2000) Coral bleaching in the southern Seychelles during the 1997–1998 Indian
Ocean warm event. Mar Pollut Bull 40:569-586
Sweatman H, Delean S, Syms S ( 2011) Assessing loss of coral cover on Australia’s Great Barrier Reef over two decades,
with implications for longer-term trends. Coral Reefs: DOI: 10.1007/s00338-010-0715-1
Turner J, Klaus R (2005) Coral reefs of the Mascarenes, Western Indian Ocean. Philos Trans
R Soc Lond A 363:229-250
Turner, J, Hardman E, Klaus R, Fagoonee I, Daby D, Baghooli R, Persands S (2000) The reefs of Mauritius. In: Souter D, Obura D,
Lindén O (eds) Coral reef degradation in the Indian Ocean. Status report 2000. CORDIO, SAREC Marine Science Program,
Stockholm, Sweden
Wilkinson C (2002) Status of coral reefs of the world: 2002. Australian Institute of Marine Science, Townsville
Wilkinson C (2004) Status of coral reefs of the world: 2004. Australian Inst. of Marine Science, Townsville
Wilkinson CR (1999) Global and local threats to coral reef functioning and existence: review and predictions. Mar Freshw Res
50:867-878
Wilson SK, Graham NAJ, Polunin NVC (2007) Appraisal of visual assessments of habitat complexity and benthic composition on
coral reefs. Mar Biol 151:1069-1076
Table 1. Number of samples by data type, management and region for the four periods. Period 1: 1977-1993; Period 2: 1994-1997;
Period 3: 1999-2000; Period 4: 2001-2005.