Skip to content Skip to navigation
University of Warwick
  • Study
  • |
  • Research
  • |
  • Business
  • |
  • Alumni
  • |
  • News
  • |
  • About

University of Warwick
Publications service & WRAP

Highlight your research

  • WRAP
    • Home
    • Search WRAP
    • Browse by Warwick Author
    • Browse WRAP by Year
    • Browse WRAP by Subject
    • Browse WRAP by Department
    • Browse WRAP by Funder
    • Browse Theses by Department
  • Publications Service
    • Home
    • Search Publications Service
    • Browse by Warwick Author
    • Browse Publications service by Year
    • Browse Publications service by Subject
    • Browse Publications service by Department
    • Browse Publications service by Funder
  • Statistics
  • Help & Advice
University of Warwick

The Library

  • Login

Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs

Tools
- Tools
+ Tools

Munywoki, Patrick, Hamid, Fauzat, Mutunga, Martin, Welch, Steve, Cane, Patricia and Nokes, D. James. (2011) Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of Clinical Microbiology, Vol.49 (No.9). pp. 3365-3367. ISSN 0095-1137

[img]
Preview
PDF
WRAP_Nokes_0380313-lf-101111-munywoki_et_al.pdf - Accepted Version - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader

Download (108Kb)
Official URL: http://dx.doi.org/10.1128/JCM.02231-10

Abstract

Detection of respiratory viruses by realtime multiplexed PCR (M-PCR) and of RSV by M-PCR and immunofluorescence(IF) was evaluated using specimens collected by nasopharyngeal flocked swab(NFS) and nasal wash(NW). In children with mild respiratory illness, NFS collection was superior to NW collection for detection of viruses by M-PCR (sensitivity 89.6% vs 79.2%, P=0.0043). NFS collection was non-inferior to NW collection in detecting RSV by IF.

Item Type: Journal Article
Subjects: R Medicine > RC Internal medicine
R Medicine > RJ Pediatrics
Divisions: Faculty of Science > Life Sciences (2010- )
Library of Congress Subject Headings (LCSH): Respiratory infections in children -- Diagnosis, Polymerase chain reaction, Diagnostic specimens -- Methodology
Journal or Publication Title: Journal of Clinical Microbiology
Publisher: American Society for Microbiology
ISSN: 0095-1137
Date: 20 July 2011
Volume: Vol.49
Number: No.9
Page Range: pp. 3365-3367
Identification Number: 10.1128/JCM.02231-10
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Restricted or Subscription Access
Funder: Bill & Melinda Gates Foundation, Wellcome Trust (London, England)
Grant number: 076278 (WT), 090853 (WT)
References: 1. Abu-Diab, A., M. Azzeh, R. Ghneim, R. Ghneim, M. Zoughbi, S. Turkuman, N. Rishmawi, A. E. Issa, I. Siriani, R. Dauodi, R. Kattan, and M. Y. Hindiyeh. 2008. Comparison between pernasal flocked swabs and nasopharyngeal aspirates for detection of common respiratory viruses in samples from children. J Clin Microbiol 46:2414-7. 2. Ahmed, A., M. F. Engelberts, K. R. Boer, N. Ahmed, and R. A. Hartskeerl. 2009. Development and validation of a real-time PCR for detection of pathogenic leptospira species in clinical materials. PLoS One 4:e7093. 3. Berkley, J. A., P. Munywoki, M. Ngama, S. Kazungu, J. Abwao, A. Bett, R. Lassauniere, T. Kresfelder, P. A. Cane, M. Venter, J. A. G. Scott, and D. J. Nokes. 2010. Viral Etiology of Severe Pneumonia Among Kenyan Infants and Children. JAMA 303:2051-2057. 4. Chan, K. H., J. S. Peiris, W. Lim, J. M. Nicholls, and S. S. Chiu. 2008. Comparison of nasopharyngeal flocked swabs and aspirates for rapid diagnosis of respiratory viruses in children. J Clin Virol 42:65-9. 5. Forgie, I. M., K. P. O'Neill, N. Lloyd-Evans, M. Leinonen, H. Campbell, H. C. Whittle, and B. M. Greenwood. 1991. Etiology of acute lower respiratory tract infections in Gambian children: I. Acute lower respiratory tract infections in infants presenting at the hospital. Pediatr Infect Dis J 10:33-41. 6. Gunson, R. N., T. C. Collins, and W. F. Carman. 2005. Real-time RT-PCR detection of 12 respiratory viral infections in four triplex reactions. J Clin Virol 33:341-4. 7. Hall, C. B., and R. G. Douglas, Jr. 1975. Clinically useful method for the isolation of respiratory syncytial virus. J Infect Dis 131:1-5. 8. Hammitt, L. L., S. Kazungu, S. Welch, A. Bett, C. O. Onyango, R. N. Gunson, J. A. Scott, and D. J. Nokes. 2011. Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. J Clin Microbiol. 9. Macfarlane, P., J. Denham, J. Assous, and C. Hughes. 2005. RSV testing in bronchiolitis: which nasal sampling method is best? Arch Dis Child 90:634-5. 10. Meerhoff, T. J., M. L. Houben, F. E. Coenjaerts, J. L. Kimpen, R. W. Hofland, F. Schellevis, and L. J. Bont. 2010. Detection of multiple respiratory pathogens during primary respiratory infection: nasal swab versus nasopharyngeal aspirate using real time polymerase chain reaction. Eur J Clin Microbiol Infect Dis 29:365-71. 11. Nair, H., D. J. Nokes, B. D. Gessner, M. Dherani, S. A. Madhi, R. J. Singleton, K. L. O'Brien, A. Roca, P. F. Wright, N. Bruce, A. Chandran, E. Theodoratou, A. Sutanto, E. R. Sedyaningsih, M. Ngama, P. K. Munywoki, C. Kartasasmita, E. A. Simoes, I. Rudan, M. W. Weber, and H. Campbell. 2010. Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. Lancet 375:1545-55. 12. Ngama, M. J., B. Ouma, M. E. English, and D. J. Nokes. 2004. Comparison of three methods of collecting nasal specimens for respiratory virus analysis. East Afr Med J 81:313-7. 13. Nokes, D. J., E. A. Okiro, M. Ngama, R. Ochola, L. J. White, P. D. Scott, M. English, P. A. Cane, and G. F. Medley. 2008. Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi District, Kenya. Clin Infect Dis 46:50-7. 14. Ohrmalm, L., M. Wong, M. Rotzen-Ostlund, O. Norbeck, K. Broliden, and T. Tolfvenstam. 2010. Flocked nasal swab versus nasopharyngeal aspirate for detection of respiratory tract viruses in immunocompromised adults: a matched comparative study. BMC Infect Dis 10:340. 15. WHO. 2006. Collecting, preserving and shipping specimens for the diagnosis of avian influenza A(H5N1) virus infection: Guide for field operations, p. 42, Viral transport media (VTM). http://www.who.int/csr/resources/publications/surveillance/WHO_CDS_EPR_ARO_ 2006_1.pdf; Last accessed on 28/04/2011;WHO.
URI: http://wrap.warwick.ac.uk/id/eprint/39441

Data sourced from Thomson Reuters' Web of Knowledge

Request changes to a record

Actions (login required)

View Item View Item

Document Downloads

More statistics for this item...
twitter

Email us: publications@warwick.ac.uk
Contact Details
About Us