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Preliminary association of microsatellite heterozygosity with footrot in domestic sheep

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Smith, Edward M., Hoffman, Joseph I., Green, Laura E. and Amos, William. (2012) Preliminary association of microsatellite heterozygosity with footrot in domestic sheep. Livestock Science, Vol.143 (No.2). pp. 293-299. ISSN 1871-1413

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Official URL: http://dx.doi.org/10.1016/j.livsci.2011.10.009

Abstract

Genetic heterozygosity in wild, unmanaged animal populations is often associated with protection against infectious disease. However, little is known about the relationship between heterozygosity and disease susceptibility in domesticated livestock, where disease resistance has the potential to improve animal welfare and productivity. We have investigated whether susceptibility to footrot, an important cause of poor welfare and reduced productivity in sheep, is associated with heterozygosity at 14 candidate microsatellite loci. Heterozygosity at locus BMC5221 was associated with resistance to footrot (P=0.0034). This locus was selected based on a gene ontology classification of 'response to Gram-negative bacteria'. Sheep homozygous at BMC5221 were at increased risk of virulent footrot (OR=4.8, 95% CI=1.5-15.3), with a dose response relationship between homozygosity and disease severity. A highly significant homozygote deficit was observed in sheep without virulent footrot (observed=4, expected=21, χ2=13.76, P=0.0002) but not in sheep that had clinical disease, suggesting homozygotes were disproportionately likely to contract virulent footrot. Our results indicate that genetic heterozygosity might be important for healthy immune function in domesticated livestock. The use of gene ontology codes might prove a useful strategy to target selection of candidate markers in future studies.

Item Type: Journal Article
Subjects: Q Science > QL Zoology
S Agriculture > SF Animal culture
Divisions: Faculty of Science > Life Sciences (2010- )
Library of Congress Subject Headings (LCSH): Footrot in sheep -- Susceptibility -- Genetic aspects, Heterozygosity
Journal or Publication Title: Livestock Science
Publisher: Elsevier Science BV
ISSN: 1871-1413
Date: November 2012
Volume: Vol.143
Number: No.2
Number of Pages: 7
Page Range: pp. 293-299
Identification Number: 10.1016/j.livsci.2011.10.009
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Restricted or Subscription Access
Funder: Wellcome Trust (London, England), Natural Environment Research Council (Great Britain) (NERC), British Antarctic Survey
References: Acevedo-Whitehouse, K., Vicente, J., Gortazar, C., Hofle, U., Fernandez-de-Mera, I.G. and Amos, W. 2005. Genetic resistance to bovine tuberculosis in the Iberian wild boar. Molecular Ecology; 14, 3209-3217. Acevedo-Whitehouse, K., Spraker, T.R., Lyons, E., Melin, S.R., Gulland, F., Delong, R.L. and Amos, W. 2006. Contrasting effects of heterozygosity on survival and hookworm resistance in California sea lion pups. Molecular Ecology; 15, 1973-1982. Amos, W., Wilmer, J.W., Fullard, K., Burg, T.M., Croxall, J.P., Bloch, D. and Coulson, T. 2001. The influence of parental relatedness on reproductive success. Proceedings of the Royal Society Series B: Biological Sciences; 268, 2021-2027. Antao, T., Lopes, A., Lopes, R.J., Beja-Pereira, A. and Luikart, G. 2008. LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics; 9, 323. Balloux, F., Amos, W. and Coulson, T. 2004. Does heterozygosity estimate inbreeding in real populations? Molecular Ecology; 13, 3021-3031. Beaumont, M.A. and Balding, D.J. 2004. Identifying adaptive genetic divergence among populations from genome scans. Mol Ecol; 13, 969-980. Beutler, B. 2000. Tlr4: central component of the sole mammalian LPS sensor. Current Opinion in Immunology; 12, 20-26. Beveridge, W.I.B. 1941. Foot-rot in sheep: A transmissable disease due to infection with Fusiformis nodosus (n. sp.). Studies on its cause, epidemiology and control. CSIRO Australia; Bulletin No. 140, 1-56. Bland, J.M. and Altman, D.G. 2000. Statistics notes. The odds ratio. British Medical Journal; 320, 1468. Crawford, A.M., Dodds, K.G., Ede, A.J., Pierson, C.A., Montgomery, G.W., Garmonsway, H.G., Beattie, A.E., Davies, K., Maddox, J.F., Kappes, S.W. and et al. 1995. An autosomal genetic linkage map of the sheep genome. Genetics; 140, 703-724. Dalrymple, B.P., Kirkness, E.F., Nefedov, M., McWilliam, S., Ratnakumar, A., Barris, W., Zhao, S., Shetty, J., Maddox, J.F., O'Grady, M., Nicholas, F., Crawford, A.M., Smith, T., de Jong, P.J., McEwan, J., Oddy, V.H. and Cockett, N.E. 2007. Using comparative genomics to reorder the human genome sequence into a virtual sheep genome. Genome Biology; 8, R152. Davies, G., Stear, M.J., Benothman, M., Abuagob, O., Kerr, A., Mitchell, S. and Bishop, S.C. 2006. Quantitative trait loci associated with parasitic infection in Scottish blackface sheep. Heredity; 96, 252-258. Ennen, S., Hamann, H., Distl, O., Hickford, J., Zhou, H. and Ganter, M. 2009. A field trial to control ovine footrot via vaccination and genetic markers. Small Ruminant Research; 86, 22-25. Escayg, A.P., Hickford, J.G. and Bullock, D.W. 1997. Association between alleles of the ovine major histocompatibility complex and resistance to footrot. Research in Veterinary Science; 63, 283-287. Hawker, L. 2007. An intervention study to minimise footrot in sheep. PhD Thesis. Dept. of Biological Sciences, University of Warwick. Hoffman, J.I. and Amos, W. 2005. Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology; 14, 599-612. Kaler, J. and Green, L.E. 2008. Naming and recognition of six foot lesions of sheep using written and pictorial information: a study of 809 English sheep farmers. Preventive Veterinary Medicine; 83, 52-64. Kaler, J. and Green, L.E. 2009. Farmers' practices and factors associated with the prevalence of all lameness and lameness attributed to interdigital dermatitis and footrot in sheep flocks in England in 2004. Preventive Veterinary Medicine; 92, 52-59. Kaler, J., Wassink, G.J. and Green, L.E. 2008. The inter- and intra-observer reliability of a locomotion scoring scale for sheep. The Veterinary Journal; 180, 189-194. Kaler, J., Daniels, S.L.S., Wright, J.L. and Green, L.E. 2009. Randomised clinical trial of long acting oxytetracycline, foot trimming and flunixine meglumine on time to recovery in sheep with footrot. J Vet Intern Med; Online early. Kashtanov, S.N., Lazebnyi, O.E. and Gracheva, S.V. 2003. Signs of fitness and allozyme heterozygosity in an artificial population of sable Martez zibellinna L. Russian Journal of Genetics; 39, 1693-1697. Luhken, G., Zieleniewicz, D., Brandt, H.R., Buschmann, A., Groschup, M.H. and Erhardt, G. 2007. Microsatellites MCMA53 and MCMA16 on OAR15 are associated with susceptibility to atypical scrapie. Animal Genetics; 38, 88-89. Luikart, G., Pilgrim, K., Visty, J., Ezenwa, V.O. and Schwartz, M.K. 2008. Candidate gene microsatellite variation is associated with parasitism in wild bighorn sheep. Biology Letters; 4, 228-231. Lyons, E.J., Amos, W., Berkley, J.A., Mwangi, I., Shafi, M., Williams, T.N., Newton, C.R., Peshu, N., Marsh, K., Scott, J.A. and Hill, A.V. 2009. Homozygosity and risk of childhood death due to invasive bacterial disease. BMC Medical Genetics; 10, 55. Maddox, J.F., Davies, K.P., Crawford, A.M., Hulme, D.J., Vaiman, D., Cribiu, E.P., Freking, B.A., Beh, K.J., Cockett, N.E., Kang, N., Riffkin, C.D., Drinkwater, R., Moore, S.S., Dodds, K.G., Lumsden, J.M., van Stijn, T.C., Phua, S.H., Adelson, D.L., Burkin, H.R., Broom, J.E., Buitkamp, J., Cambridge, L., Cushwa, W.T., Gerard, E., Galloway, S.M., Harrison, B., Hawken, R.J., Hiendleder, S., Henry, H.M., Medrano, J.F., Paterson, K.A., Schibler, L., Stone, R.T. and van Hest, B. 2001. An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research; 11, 1275-1289. Meadows, J.R., Chan, E.K. and Kijas, J.W. 2008. Linkage disequilibrium compared between five populations of domestic sheep. BMC Genetics; 9, 61. Nieuwhof, G.J., Conington, J., Bunger, L., Haresign, W. and Bishop, S.C. 2008. Genetic and phenotypic aspects of foot lesion scores in sheep of different ages and breeds. Animal; 2, 1289-1296. Ozaki, K., Sato, H., Iida, A., Mizuno, H., Nakamura, T., Miyamoto, Y., Takahashi, A., Tsunoda, T., Ikegawa, S., Kamatani, N., Hori, M., Nakamura, Y. and Tanaka, T. 2006. A functional SNP in PSMA6 confers risk of myocardial infarction in the Japanese population. Nature Genetics; 38, 921-925. Phua, S.H., Dodds, K.G., Morris, C.A., Paterson, K.A., McEwan, J.C., Garmonsway, H.G., Towers, N.R. and Crawford, A.M. 1999. Catalase gene is associated with facial eczema disease resistance in sheep. Animal Genetics; 30, 286-295. Raymond, M. and Rousset, F. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity; 86, 248-249. Rijks, J.M., Hoffman, J.I., Kuiken, T., Osterhaus, A.D. and Amos, W. 2008. Heterozygosity and lungworm burden in harbour seals (Phoca vitulina). Heredity; 100, 587-593. Schulman, N.F., Viitala, S.M., de Koning, D.J., Virta, J., Maki-Tanila, A. and Vilkki, J.H. 2004. Quantitative trait loci for health traits in Finnish Ayrshire cattle. Journal of Dairy Science; 87, 443-449. Silverman, N. and Maniatis, T. 2001. NF-kappaB signaling pathways in mammalian and insect innate immunity. Genes and Development; 15, 2321-2342. Skerman, T.M. and Moorhouse, S.R. 1987. Broomfield Corriedales: a strain of sheep selectively bred for resistance to footrot. New Zealand Veterinary Journal; 35, 101-106. Skol, A.D., Scott, L.J., Abecasis, G.R. and Boehnke, M. 2006. Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies. Nature Genetics; 38, 209-213. Slate, J., David, P., Dodds, K.G., Veenvliet, B.A., Glass, B.C., Broad, T.E. and McEwan, J.C. 2004. Understanding the relationship between the inbreeding coefficient and multilocus heterozygosity: theoretical expectations and empirical data. Heredity; 93, 255-265. Storey, J.D. and Tibshirani, R. 2003a. Statistical significance for genomewide studies. Proceedings of the National Academy of Sciences of the United States of America; 100, 9440-9445. Storey, J.D. and Tibshirani, R. 2003b. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A; 100, 9440-9445. Whittington, R.J. 1995. Observations on the indirect transmission of virulent ovine footrot in sheep yards and its spread in sheep on unimproved pasture. Australian Veterinary Journal; 72, 132-134.
URI: http://wrap.warwick.ac.uk/id/eprint/39924

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