The Library
Covalent linkage mediates communication between ACP and TE domains in modular polyketide synthases
Tools
Tran, Lucky, Tosin, Manuela, Spencer, Jonathan B., Leadlay, Peter F. and Weissman, Kira J.. (2008) Covalent linkage mediates communication between ACP and TE domains in modular polyketide synthases. Chembiochem, Vol.9 (No.6). pp. 905-915. ISSN 1439-4227
Full text not available from this repository.
Official URL: http://dx.doi.org/10.1002/cbic.200700738
Abstract
Polyketide natural products such as erythromycin A and epothilone are assembled on multienzyme polyketide synthases (PKSs), which consist of modular sets of protein domains. Within these type I systems, the fidelity of biosynthesis depends on the programmed interaction among the multiple domains within each module, centered around the acyl carrier protein (ACP). A detailed understanding of interdomain communication will therefore be vital for attempts to reprogram these pathways by genetic engineering. We report here that the interaction between a representative ACP domain and its downstream thioesterase (TE) is mediated largely by covalent tethering through a short “linker” region, with only a minor energetic contribution from protein–protein molecular recognition. This finding helps explain in part the empirical observation that TE domains can function out of their normal context in engineered assembly lines, and supports the view that overall PKS architecture may dictate at least a subset of interdomain interactions.
| Item Type: | Journal Article |
|---|---|
| Subjects: | Q Science > QD Chemistry Q Science > QP Physiology |
| Divisions: | Faculty of Science > Chemistry |
| Library of Congress Subject Headings (LCSH): | Carrier proteins, Polyketides, Biosynthesis |
| Journal or Publication Title: | Chembiochem |
| Publisher: | Wiley - V C H Verlag GmbH & Co. KGaA |
| ISSN: | 1439-4227 |
| Date: | 2008 |
| Volume: | Vol.9 |
| Number: | No.6 |
| Page Range: | pp. 905-915 |
| Identification Number: | 10.1002/cbic.200700738 |
| Status: | Peer Reviewed |
| Publication Status: | Published |
| Funder: | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) |
| References: | [1] K. J. Weissman, P. F. Leadlay, Nat. Rev. Microbiol. 2005, 3, 925–936. [2] A. M. Hill, Nat. Prod. Rep. 2006, 23, 256–320. [3] C. Hertweck, A. Luzhetskyy, Y. Rebets, A. Bechthold, Nat. Prod. Rep. 2007, 24, 162–190. [4] S. Smith, A. Witkowski, A. K. Joshi, Prog. Lipid Res. 2003, 42, 289–317. [5] J. CortTs, S. F. Haydock, G. A. Roberts, D. J. Bevitt, P. F. Leadley, Nature 1990, 348, 176–178. [6] S. Donadio, M. J. Staver, J. B. McAlpine, S. J. Swanson, L. Katz, Science 1991, 252, 675–679. [7] H. G. Floss, J. Biotechnol. 2006, 124, 242–257. [8] M. P. Crump, J. Crosby, C. E. Dempsey, J. A. Parkinson, M. Murray, D. A. Hopwood, T. J. Simpson, Biochemistry 1997, 36, 6000–6008. [9] G. Y. Xu, A. Tam, L. Lin, J. Hixon, C. C. Fritz, R. Powers, Structure 2001, 9, 277–287. [10] H. C. Wong, G. Liu, Y. M. Zhang, C. O. Rock, J. Zheng, J. Biol. Chem. 2002, 277, 15874–15880. [11] S. C. Findlow, C. Winsor, T. J. Simpson, J. Crosby, M. P. Crump, Biochemistry 2003, 42, 8423–8433. [12] A. K. Sharma, S. K. Sharma, A. Surolia, N. Surolia, S. P. Sarma, Biochemistry 2006, 45, 6904–6916. [13] V. Y. Alekseyev, C. W. Liu, D. E. Cane, J. D. Puglisi, C. Khosla, Protein Sci. 2007, 16, 2093–2107. [14] Y. M. Zhang, B. Wu, J. Zheng, C. O. Rock, J. Biol. Chem. 2003, 278, 52935–52943. [15] Y. M. Zhang, H. Marrakchi, S. W. White, C. O. Rock, J. Lipid Res. 2003, 44, 1–10. [16] L. M. Worsham, L. Earls, C. Jolly, K. G. Langston, M. S. Trent, M. L. Ernst- Fonberg, Biochemistry 2003, 42, 167–176. [17] Y. M. Zhang, M. S. Rao, R. J. Heath, A. C. Price, A. J. Olson, C. O. Rock, S. W. White, J. Biol. Chem. 2001, 276, 8231–8238. [18] A. T. Hadfield, C. Limpkin, W. Teartasin, T. J. Simpson, J. Crosby, M. P. Crump, Structure 2004, 12, 1865–1875. [19] C. Khosla, S. Ebert-Khosla, D. A. Hopwood, Mol. Microbiol. 1992, 6, 3237–3249. [20] C. Khosla, R. McDaniel, S. Ebert-Khosla, R. Torres, D. H. Sherman, M. J. Bibb, D. A. Hopwood, J. Bacteriol. 1993, 175, 2197–2204. [21] T. S. Lee, C. Khosla, Y. Tang, J. Am. Chem. Soc. 2005, 127, 12254–12262. [22] K. J. Weissman, H. Hong, B. Popovic, F. Meersman, Chem. Biol. 2006, 13, 625–636. [23] K. J. Weissman, H. Hong, M. Oliynyk, A. P. Siskos, P. F. Leadlay, ChemBio- Chem 2004, 5, 116–125. [24] R. H. Lambalot, A. M. Gehring, R. S. Flugel, P. Zuber, M. LaCelle, M. A. Marahiel, R. Reid, C. Khosla, C. T. Walsh, Chem. Biol. 1996, 3, 923–936. [25] Y. Tang, A. Y. Chen, C. Y. Kim, D. E. Cane, C. Khosla, Chem. Biol. 2007, 14, 931–943. [26] G. Yadav, R. S. Gokhale, D. Mohanty, Nucleic Acids Res. 2003, 31, 3654– 3658. [27] S. C. Tsai, L. J. Miercke, J. Krucinski, R. Gokhale, J. C. Chen, P. G. Foster, D. E. Cane, C. Khosla, R. M. Stroud, Proc. Natl. Acad. Sci. USA 2001, 98, 14808–14813. [28] P. Caffrey, B. Green, L. C. Packman, B. J. Rawlings, J. Staunton, P. F. Lead- ACHTUNGTRENUNGlay, Eur. J. Biochem. 1991, 195, 823–830. [29] K. J. Weissman, C. J. Smith, U. Hanefeld, R. Aggarwal, M. Bycroft, J. Staunton, P. F. Leadlay, Angew. Chem. 1998, 110, 1503–1506; Angew. Chem. Int. Ed. 1998, 37, 1437–1440. [30] R. Aggarwal, P. Caffrey, P. F. Leadlay, C. J. Smith, J. Staunton, J. Chem. Soc. Chem. Commun. 1995, 1519–1520. [31] N. Wu, D. E. Cane, C. Khosla, Biochemistry 2002, 41, 5056–5066. [32] L. E. Quadri, P. H. Weinreb, M. Lei, M. M. Nakano, P. Zuber, C. T. Walsh, Biochemistry 1998, 37, 1585–1595. [33] R. S. Gokhale, D. Hunziker, D. E. Cane, C. Khosla, Chem. Biol. 1999, 6, 117–125. [34] J. CortTs, K. E. H. Wiesmann, G. A. Roberts, M. J. Brown, J. Staunton, P. F. Leadlay, Science 1995, 268, 1487–1489. [35] G. L. Ellman, Arch. Biochem. Biophys. 1959, 82, 70–77. [36] P. A. van der Merwe in Protein–Ligand Interactions: A Practical Approach, Vol. 1: Hydrodynamics and Calorimetry (Eds.: S. Harding, P. Z. Chowdhry), Oxford University Press, Oxford 2001, pp. 137–170. [37] M. L. Doyle in Quantitation of Protein Interactions (Ed.: V. Chanda), Wiley, New York 1999, pp. 20.4.1–20.4.24. [38] S. J. Moss, C. J. Martin, B. Wilkinson, Nat. Prod. Rep. 2004, 21, 575–593. [39] B. Wilkinson, G. Foster, B. A. Rudd, N. L. Taylor, A. P. Blackaby, P. J. Sidebottom, D. J. Cooper, M. J. Dawson, A. D. Buss, S. Gaisser, I. U. Bçhm, C. J. Rowe, J. CortTs, P. F. Leadlay, J. Staunton, Chem. Biol. 2000, 7, 111– 117. [40] C. D. Richter, D. A. Stanmore, R. N. Miguel, M. C. Moncrieffe, L. Tran, S. Brewerton, F. Meersman, R. W. Broadhurst, K. J. Weissman, FEBS J. 2007, 274, 2196–2209. [41] Y. Tang, C. Y. Kim, I. I. Mathews, D. E. Cane, C. Khosla, Proc. Natl. Acad. Sci. USA 2006, 103, 11124–11129. [42] A. T. Keatinge-Clay, R. M. Stroud, Structure 2006, 14, 737–748. [43] R. N. Perham, Annu. Rev. Biochem. 2000, 69, 961–1004. [44] H. Hong, A. N. Appleyard, A. P. Siskos, J. Garcia-Bernardo, J. Staunton, P. F. Leadlay, FEBS J. 2005, 272, 2373–2387. [45] A. K. Joshi, A. Witkowski, H. A. Berman, L. Zhang, S. Smith, Biochemistry 2005, 44, 4100–4107. [46] J. S. Mattick, J. Nickless, M. Mizugaki, C. Y. Yang, S. Uchiyama, S. J. Wakil, J. Biol. Chem. 1983, 258, 15300–15 304. [47] A. C. Mercer, M. D. Burkart, Nat. Prod. Rep. 2007, 24, 750–773. [48] Q. Li, C. Khosla, J. D. Puglisi, C. W. Liu, Biochemistry 2003, 42, 4648– 4657. [49] A. Roujeinikova, C. Baldock, W. J. Simon, J. Gilroy, P. J. Baker, A. R. Stuitje, D. W. Rice, A. R. Slabas, J. B. Rafferty, Structure 2002, 10, 825–835. [50] Z. A. Hughes-Thomas, C. B. Stark, I. U. Bçhm, J. Staunton, P. F. Leadlay, Angew. Chem. 2003, 115, 4613–4616; Angew. Chem. Int. Ed. 2003, 42, 4475–4478. [51] C. J. Martin, M. C. Timoney, R. M. Sheridan, S. G. Kendrew, B. Wilkinson, J. Staunton, P. F. Leadlay, Org. Biomol. Chem. 2003, 1, 4144–4147. [52] J. W. Giraldes, D. L. Akey, J. D. Kittendorf, D. H. Sherman, J. L. Smith, R. A. Fecik, Nat. Chem. Biol. 2006, 2, 531–536. [53] D. L. Akey, J. D. Kittendorf, J. W. Giraldes, R. A. Fecik, D. H. Sherman, J. L. Smith, Nat. Chem. Biol. 2006, 2, 537–542. [54] A. Y. Chen, D. E. Cane, C. Khosla, Chem. Biol. 2007, 14, 784–792. |
| URI: | http://wrap.warwick.ac.uk/id/eprint/40366 |
Actions (login required)
![]() |
View Item |
Tools
Tools

