The Library
Folding-competent and folding-defective forms of Ricin A chain have different fates following retrotranslocation from the endoplasmic reticulum
Tools
Li, Shuyu, Spooner, Robert A. , Allen, Stuart C. H., Guise, Christopher P., Ladds, Graham , Schnöder, Tina, Schmitt, Manfred J., Lord, Mike (J. Mike) and Roberts, Lynne M. . (2010) Folding-competent and folding-defective forms of Ricin A chain have different fates following retrotranslocation from the endoplasmic reticulum. Molecular Biology of the Cell, Vol.21 (No.15). pp. 2543-2554. ISSN 1939-4586
|
PDF
WRAP_Roberts_Folding_Competent.pdf - Requires a PDF viewer such as GSview, Xpdf or Adobe Acrobat Reader Download (3016Kb) |
Official URL: http://dx.doi.org/10.1091/mbc.E09-08-0743
Abstract
We report that a toxic polypeptide retaining the potential to refold upon dislocation from the endoplasmic reticulum (ER) to the cytosol (ricin A chain; RTA) and a misfolded version that cannot (termed RTAΔ), follow ER-associated degradation (ERAD) pathways in Saccharomyces cerevisiae that substantially diverge in the cytosol. Both polypeptides are dislocated in a step mediated by the transmembrane Hrd1p ubiquitin ligase complex and subsequently degraded. Canonical polyubiquitylation is not a prerequisite for this interaction because a catalytically inactive Hrd1p E3 ubiquitin ligase retains the ability to retrotranslocate RTA, and variants lacking one or both endogenous lysyl residues also require the Hrd1p complex. In the case of native RTA, we established that dislocation also depends on other components of the classical ERAD-L pathway as well as an ongoing ER–Golgi transport. However, the dislocation pathways deviate strikingly upon entry into the cytosol. Here, the CDC48 complex is required only for RTAΔ, although the involvement of individual ATPases (Rpt proteins) in the 19S regulatory particle (RP) of the proteasome, and the 20S catalytic chamber itself, is very different for the two RTA variants. We conclude that cytosolic ERAD components, particularly the proteasome RP, can discriminate between structural features of the same substrate.
| Item Type: | Journal Article |
|---|---|
| Subjects: | Q Science > QP Physiology |
| Divisions: | Faculty of Science > Life Sciences (2010- ) > Biological Sciences ( -2010) Faculty of Medicine > Warwick Medical School > Biomedical Cell Biology Faculty of Medicine > Warwick Medical School |
| Library of Congress Subject Headings (LCSH): | Ricin, Endoplasmic reticulum, Translocation (Genetics), Saccharomyces cerevisiae, Cytosol |
| Journal or Publication Title: | Molecular Biology of the Cell |
| Publisher: | American Society for Cell Biology |
| ISSN: | 1939-4586 |
| Date: | 1 August 2010 |
| Volume: | Vol.21 |
| Number: | No.15 |
| Page Range: | pp. 2543-2554 |
| Identification Number: | 10.1091/mbc.E09-08-0743 |
| Status: | Peer Reviewed |
| Access rights to Published version: | Restricted or Subscription Access |
| Funder: | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC), Great Britain. Dept. of Health (DoH), Great Britain. Home Office, Wellcome Trust (London, England), Deutsche Forschungsgemeinschaft (DFG), National Institutes of Health (U.S.) (NIH) |
| Grant number: | 080566/Z/06/Z (Wellcome), GRK845 (DFG), 5U01AI65869-02 (NIH) |
| References: | Alcock, F., and Swanton, E. (2009). Mammalian OS-9 is upregulated in response to endoplasmic reticulum stress and facilitates ubiquitination of misfolded glycoproteins. J. Mol. Biol. 385, 1032–1042. Allen, S., Naim, H. Y., and Bulleid, N. J. (1995). Intracellular folding of tissue-type plasminogen activator. Effects of disulfide bond formation on N-linked glycosylation and secretion. J. Biol. Chem. 270, 4797–4804. Allen, S. C., Moore, K. A., Marsden, C. J., Fulop, V., Moffat, K. G., Lord, J. M., Ladds, G., and Roberts, L. M. (2007). The isolation and characterization of temperature-dependent ricin A chain molecules in Saccharomyces cerevisiae. FEBS J. 274, 5586–5599. Argent, R. H., Parrott, A. M., Day, P. J., Roberts, L. M., Stockley, P. G., Lord, J. M., and Radford, S. E. (2000). Ribosome-mediated folding of partially unfolded ricin A-chain. J. Biol. Chem. 275, 9263–9269. Arndt, V., Rogon, C., and Hohfeld, J. (2007). To be, or not to be—molecular chaperones in protein degradation. Cell Mol. Life Sci. 64, 2525–2541. Bar-Nun, S. (2005). The role of p97/Cdc48p in endoplasmic reticulum-associated degradation: from the immune system to yeast. Curr. Top. Microbiol. Immunol. 300, 95–125. Barlowe, C., and Schekman, R. (1993). SEC12 encodes a guanine-nucleotideexchange factor essential for transport vesicle budding from the ER. Nature 365, 347–349. Bays, N. W., Wilhovsky, S. K., Goradia, A., Hodgkiss-Harlow, K., and Hampton, R. Y. (2001). HRD4/NPL4 is required for the proteasomal processing of ubiquitinated ER proteins. Mol. Biol. Cell 12, 4114–4128. Bazirgan, O. A., and Hampton, R. Y. (2008). Cue1p is an activator of Ubc7p E2 activity in vitro and in vivo. J. Biol. Chem. 283, 12797–12810. Bellisola, G., Fracasso, G., Ippoliti, R., Menestrina, G., Rosen, A., Solda, S., Udali, S., Tomazzolli, R., Tridente, G., and Colombatti, M. (2004). Reductive activation of ricin and ricin A-chain immunotoxins by protein disulfide isomerase and thioredoxin reductase. Biochem. Pharmacol. 67, 1721–1731. Biederer, T., Volkwein, C., and Sommer, T. (1997). Role of Cue1p in ubiquitination and degradation at the ER surface. Science 278, 1806–1809. Bordallo, J., and Wolf, D. H. (1999). A RING-H2 finger motif is essential for the function of Der3/Hrd1 in endoplasmic reticulum associated protein degradation in the yeast Saccharomyces cerevisiae. FEBS Lett. 448, 244–248. Caldwell, S. R., Hill, K. J., and Cooper, A. A. (2001). Degradation of endoplasmic reticulum (ER) quality control substrates requires transport between the ER and Golgi. J. Biol. Chem. 276, 23296–23303. Carroll, S. M., and Hampton, R. Y. (2010). Usa1p is required for optimal function and regulation of the Hrd1p ER-associated degradation (ERAD) ubiquitin ligase. J. Biol. Chem. 285, 5146–5156. Carvalho, P., Goder, V., and Rapoport, T. A. (2006). Distinct ubiquitin-ligase complexes define convergent pathways for the degradation of ER proteins. Cell 126, 361–373. Chaddock, J. A., and Roberts, L. M. (1993). Mutagenesis and kinetic analysis of the active site Glu177 of ricin A-chain. Protein Eng. 6, 425–431. Christianson, J. C., Shaler, T. A., Tyler, R. E., and Kopito, R. R. (2008). OS-9 and GRP94 deliver mutant alpha1-antitrypsin to the Hrd1-SEL1L ubiquitin ligase complex for ERAD. Nat. Cell Biol. 10, 272–282. Deeks, E. D., Cook, J. P., Day, P. J., Smith, D. C., Roberts, L. M., and Lord, J. M. (2002). The low lysine content of ricin A chain reduces the risk of proteolytic degradation after translocation from the endoplasmic reticulum to the cytosol. Biochemistry 41, 3405–3413. Denic, V., Quan, E. M., and Weissman, J. S. (2006). A luminal surveillance complex that selects misfolded glycoproteins for ER-associated degradation. Cell 126, 349–359. Di Cola, A., Frigerio, L., Lord, J. M., Roberts, L. M., and Ceriotti, A. (2005). Endoplasmic reticulum-associated degradation of ricin A chain has unique and plant-specific features. Plant Physiol. 137, 287–296. Duden, R. (2003). ER-to-Golgi transport: COP I and COP II function [Review]. Mol. Membr. Biol. 20, 197–207. Elkabetz, Y., Shapira, I., Rabinovich, E., and Bar-Nun, S. (2004). Distinct steps in dislocation of luminal endoplasmic reticulum-associated degradation substrates: roles of endoplasmic reticulum-bound p97/Cdc48p and proteasome. J. Biol. Chem. 279, 3980–3989. Endo, Y., Mitsui, K., Motizuki, M., and Tsurugi, K. (1987). The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes. The site and the characteristics of the modification in 28 S ribosomal RNA caused by the toxins. J. Biol. Chem. 262, 5908–5912. Gaber, R. F., Copple, D. M., Kennedy, B. K., Vidal, M., and Bard, M. (1989). The yeast gene ERG6 is required for normal membrane function but is not essential for biosynthesis of the cell-cycle-sparking sterol. Mol. Cell. Biol. 9, 3447–3456. Gauss, R., Sommer, T., and Jarosch, E. (2006). The Hrd1p ligase complex forms a linchpin between ER-lumenal substrate selection and Cdc48p recruitment. EMBO J. 25, 1827–1835. Ghislain, M., Udvardy, A., and Mann, C. (1993). S. cerevisiae 26S protease mutants arrest cell division in G2/metaphase. Nature 366, 358–362. Gietz, R. D., and Woods, R. A. (2002). Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol. 350, 87–96. Gillece, P., Luz, J. M., Lennarz, W. J., de La Cruz, F. J., and Romisch, K. (1999). Export of a cysteine-free misfolded secretory protein from the endoplasmic reticulum for degradation requires interaction with protein disulfide isomerase. J. Cell Biol. 147, 1443–1456. Graham, T. R., Scott, P. A., and Emr, S. D. (1993). Brefeldin A reversibly blocks early but not late protein transport steps in the yeast secretory pathway. EMBO J. 12, 869–877. Haynes, C. M., Caldwell, S., and Cooper, A. A. (2002). An HRD/DERindependent ER quality control mechanism involves Rsp5p-dependent ubiquitination and ER-Golgi transport. J. Cell Biol. 158, 91–101. Hazes, B., and Read, R. J. (1997). Accumulating evidence suggests that several AB-toxins subvert the endoplasmic reticulum-associated protein degradation pathway to enter target cells. Biochemistry 36, 11051–11054. Heiligenstein, S., Eisfeld, K., Sendzik, T., Jimenez-Becker, N., Breinig, F., and Schmitt, M. J. (2006). Retrotranslocation of a viral A/B toxin from the yeast endoplasmic reticulum is independent of ubiquitination and ERAD. EMBO J. 25, 4717–4727. Heinemeyer, W., Kleinschmidt, J. A., Saidowsky, J., Escher, C., and Wolf, D. H. (1991). Proteinase yscE, the yeast proteasome/multicatalytic-multifunctional proteinase: mutants unravel its function in stress induced proteolysis and uncover its necessity for cell survival. EMBO J. 10, 555–562. Hitt, R., and Wolf, D. H. (2004). Der1p, a protein required for degradation of malfolded soluble proteins of the endoplasmic reticulum: topology and Der1- like proteins. FEMS Yeast Res. 4, 721–729. Jarosch, E., Geiss-Friedlander, R., Meusser, B., Walter, J., and Sommer, T. (2002a). Protein dislocation from the endoplasmic reticulum—pulling out the suspect. Traffic 3, 530–536. Jarosch, E., Taxis, C., Volkwein, C., Bordallo, J., Finley, D., Wolf, D. H., and Sommer, T. (2002b). Protein dislocation from the ER requires polyubiquitination and the AAA-ATPase Cdc48. Nat. Cell Biol. 4, 134–139. Kaiser, C. A., and Schekman, R. (1990). Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway. Cell 61, 723–733. Kawaguchi, S., and Ng, D. T. (2007). SnapShot: ER-associated protein degradation pathways. Cell 129, 1230 Kim, I., Ahn, J., Liu, C., Tanabe, K., Apodaca, J., Suzuki, T., and Rao, H. (2006). The Png1-Rad23 complex regulates glycoprotein turnover. J. Cell Biol. 172, 211–219. Kim, Y., Mlsna, D., Monzingo, A. F., Ready, M. P., Frankel, A., and Robertus, J. D. (1992). Structure of a ricin mutant showing rescue of activity by a noncatalytic residue. Biochemistry 31, 3294–3296. Knop, M., Finger, A., Braun, T., Hellmuth, K., and Wolf, D. H. (1996). Der1, a novel protein specifically required for endoplasmic reticulum degradation in yeast. EMBO J. 15, 753–763. Kohler, A., Cascio, P., Leggett, D. S., Woo, K. M., Goldberg, A. L., and Finley, D. (2001). The axial channel of the proteasome core particle is gated by the Rpt2 ATPase and controls both substrate entry and product release. Mol. Cell 7, 1143–1152. Lipson, C., Alalouf, G., Bajorek, M., Rabinovich, E., Atir-Lande, A., Glickman, M., and Bar-Nun, S. (2008). A proteasomal ATPase contributes to dislocation of endoplasmic reticulum-associated degradation (ERAD) substrates. J. Biol. Chem. 283, 7166–7175. Lord, J. M., Roberts, L. M., and Lencer, W. I. (2005). Entry of protein toxins into mammalian cells by crossing the endoplasmic reticulum membrane: co-opting basic mechanisms of endoplasmic reticulum-associated degradation. Curr. Top. Microbiol. Immunol. 300, 149–168. Marshall, R. S., Jolliffe, N. A., Ceriotti, A., Snowden, C. J., Lord, J. M., Frigerio, L., and Roberts, L. M. (2008). The role of CDC48 in the retro-translocation of non-ubiquitinated toxin substrates in plant cells. J. Biol. Chem. 283, 15869– 15877. Mayerhofer, P. U., Cook, J. P., Wahlman, J., Pinheiro, T. T., Moore, K. A., Lord, J. M., Johnson, A. E., and Roberts, L. M. (2009). Ricin A-chain insertion into ER membranes is triggered by a temperature increase to 37uC. J. Biol. Chem. 284, 10232–10242. Medicherla, B., Kostova, Z., Schaefer, A., and Wolf, D. H. (2004). A genomic screen identifies Dsk2p and Rad23p as essential components of ER-associated degradation. EMBO Rep. 5, 692–697. Metzger, M. B., Maurer, M. J., Dancy, B. M., and Michaelis, S. (2008). Degradation of a cytosolic protein requires endoplasmic reticulum-associated degradation machinery. J. Biol. Chem. 283, 32302–32316. Meusser, B., Hirsch, C., Jarosch, E., and Sommer, T. (2005). ERAD: the long road to destruction. Nat. Cell Biol. 7, 766–772. Nakatsukasa, K., and Brodsky, J. L. (2008). The recognition and retrotranslocation of misfolded proteins from the endoplasmic reticulum. Traffic 9, 861– 870. Nishikawa, S. I., Fewell, S. W., Kato, Y., Brodsky, J. L., and Endo, T. (2001). Molecular chaperones in the yeast endoplasmic reticulum maintain the solubility of proteins for retrotranslocation and degradation. J. Cell Biol. 153, 1061–1070. Rabinovich, E., Kerem, A., Frohlich, K. U., Diamant, N., and Bar-Nun, S. (2002). AAA-ATPase p97/Cdc48p, a cytosolic chaperone required for endoplasmic reticulum- associated protein degradation. Mol. Cell. Biol. 22, 626–634. Rodighiero, C., Tsai, B., Rapoport, T. A., and Lencer, W. I. (2002). Role of ubiquitination in retro-translocation of cholera toxin and escape of cytosolic degradation. EMBO Rep. 3, 1222–1227. Rouiller, I., DeLaBarre, B., May, A. P., Weis, W. I., Brunger, A. T., Milligan, R. A., and Wilson-Kubalek, E. M. (2002). Conformational changes of the multifunction p97 AAA ATPase during its ATPase cycle. Nat. Struct. Biol. 9, 950–957. Rubin, D. M., Glickman, M. H., Larsen, C. N., Dhruvakumar, S., and Finley, D. (1998). Active site mutants in the six regulatory particle ATPases reveal multiple roles for ATP in the proteasome. EMBO J. 17, 4909–4919. Sharma, N., Park, S. W., Vepachedu, R., Barbieri, L., Ciani, M., Stirpe, F., Savary, B. J., and Vivanco, J. M. (2004). Isolation and characterization of an RIP (ribosome-inactivating protein)-like protein from tobacco with dual enzymatic activity. Plant Physiol. 134, 171–181. Sikorski, R. S., and Hieter, P. (1989). A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122, 19–27. Simpson, J. C., Lord, J. M., and Roberts, L. M. (1995). Point mutations in the hydrophobic C-terminal region of ricin A chain indicate that Pro250 plays a key role in membrane translocation. Eur. J. Biochem. FEBS 232, 458–463. Simpson, J. C., Roberts, L. M., Romisch, K., Davey, J., Wolf, D. H., and Lord, J. M. (1999). Ricin A chain utilises the endoplasmic reticulum-associated protein degradation pathway to enter the cytosol of yeast. FEBS Lett. 459, 80–84. Spear, E. D., and Ng, D. T. (2005). Single, context-specific glycans can target misfolded glycoproteins for ER-associated degradation. J. Cell Biol. 169, 73–82. Spooner, R. A., Hart, P. J., Cook, J. P., Pietroni, P., Rogon, C., Hohfeld, J., Roberts, L. M., and Lord, J. M. (2008). Cytosolic chaperones influence the fate of a toxin dislocated from the endoplasmic reticulum. Proc. Natl. Acad. Sci. USA 105, 17408–17413. Spooner, R. A., Smith, D. C., Easton, A. J., Roberts, L. M., and Lord, J. M. (2006). Retrograde transport pathways utilised by viruses and protein toxins. Virol. J. 3, 26–35. Spooner, R. A., Watson, P. D., Marsden, C. J., Smith, D. C., Moore, K. A., Cook, J. P., Lord, J. M., and Roberts, L. M. (2004). Protein disulphide-isomerase reduces ricin to its A and B chains in the endoplasmic reticulum. Biochem. J. 383, 285–293. Springer, S., Chen, E., Duden, R., Marzioch, M., Rowley, A., Hamamoto, S., Merchant, S., and Schekman, R. (2000). The p24 proteins are not essential for vesicular transport in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97, 4034–4039. Taxis, C., Hitt, R., Park, S. H., Deak, P. M., Kostova, Z., and Wolf, D. H. (2003). Use of modular substrates demonstrates mechanistic diversity and reveals differences in chaperone requirement of ERAD. J. Biol. Chem. 278, 35903–35913. Vashist, S., Kim, W., Belden, W. J., Spear, E. D., Barlowe, C., and Ng, D. T. (2001). Distinct retrieval and retention mechanisms are required for the quality control of endoplasmic reticulum protein folding. J. Cell Biol. 155, 355–368.Vashist, S., and Ng, D. T. (2004). Misfolded proteins are sorted by a sequential checkpoint mechanism of ER quality control. J. Cell Biol. 165, 41–52. Vogel, J. P., Lee, J. N., Kirsch, D. R., Rose, M. D., and Sztul, E. S. (1993). Brefeldin A causes a defect in secretion in Saccharomyces cerevisiae. J. Biol. Chem. 268, 3040–3043. Wesche, J., Rapak, A., and Olsnes, S. (1999). Dependence of ricin toxicity on translocation of the toxin A-chain from the endoplasmic reticulum to the cytosol. J. Biol. Chem. 274, 34443–34449. Wilson, J. D., Liu, Y., Bentivoglio, C. M., and Barlowe, C. (2006). Sel1p/Ubx2p participates in a distinct Cdc48p-dependent endoplasmic reticulum-associated degradation pathway. Traffic 7, 1213–1223. Xia, Z., Webster, A., Du, F., Piatkov, K., Ghislain, M., and Varshavsky, A. (2008). Substrate-binding sites of UBR1, the ubiquitin ligase of the N-end rule pathway. J. Biol. Chem. 283, 24011–24028. Xie, W., Kanehara, K., Sayeed, A., and Ng, D. T. (2009). Intrinsic conformational determinants signal protein misfolding to the Hrd1/Htm1 endoplasmic reticulum-associated degradation system. Mol. Biol. Cell 20, 3317–3329. Ye, Y., Meyer, H. H., and Rapoport, T. A. (2001). The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol. Nature 414, 652–656. Ye, Y., Meyer, H. H., and Rapoport, T. A. (2003). Function of the p97-Ufd1- Npl4 complex in retrotranslocation from the ER to the cytosol: dual recognition of nonubiquitinated polypeptide segments and polyubiquitin chains. J. Cell Biol. 162, 71–84. |
| URI: | http://wrap.warwick.ac.uk/id/eprint/4230 |
Data sourced from Thomson Reuters' Web of Knowledge
Actions (login required)
![]() |
View Item |
Tools
Tools

