The Library
A signal-to-noise ratio estimator for generalized linear model systems
Tools
Czanner, Gabriela, Eden, Uri T. and Brown, E. N. (Emery N.) (2008) A signal-to-noise ratio estimator for generalized linear model systems. In: World Congress on Engineering 2008, Imperial College London, England, Jul 02-04, 2008. Published in: Lecture Notes in Engineering and Computer Science (Proceedings of the World Congress on Engineering 2008), Vol.2171 pp. 1063-1069.
Full text not available from this repository.
Official URL: http://www.iaeng.org/publication/WCE2008/WCE2008_p...
Abstract
The signal-to-noise ratio (SNR) is a commonly used measure of system fidelity estimated as the ratio of the variance of a signal to the variance of the noise. Although widely used in analyses of physical systems, this estimator is not appropriate for point process models of neural systems or other non-Gaussian and/or non-additive signal and noise systems. We show that the extension of the standard estimator to the class of generalized linear models (GLM) yields a new SNR estimator that is ratio of two estimated prediction errors. Each prediction error estimate is an approximate chi-squared random variable whose expected value is given by its number of degrees of freedom. This allows us to compute a new bias-corrected SNR estimator. We illustrate its application in a study of simulated neural spike trains from a point process model in which the signal is task-specific modulation across multiple trials of a neurophysiological experiment. The new estimator characterizes the SNR of a neural system in terms commonly used for physical systems. It can be further extended to analyze any system in which modulation of the system's response by distinct signal components can be expressed as separate components of a likelihood function.
| Item Type: | Conference Item (UNSPECIFIED) |
|---|---|
| Subjects: | Q Science > QA Mathematics T Technology > TA Engineering (General). Civil engineering (General) T Technology > TK Electrical engineering. Electronics Nuclear engineering |
| Divisions: | Faculty of Science > Statistics |
| Library of Congress Subject Headings (LCSH): | Linear models (Statistics), Point processes, Information theory, Statistical communication theory, Signal processing, Analysis of variance |
| Journal or Publication Title: | Lecture Notes in Engineering and Computer Science (Proceedings of the World Congress on Engineering 2008) |
| Publisher: | International Association of Engineers |
| ISSN: | 978-988-17012-3-7 |
| Date: | 2008 |
| Volume: | Vol.2171 |
| Page Range: | pp. 1063-1069 |
| Status: | Not Peer Reviewed |
| Publication Status: | Published |
| Access rights to Published version: | Open Access |
| Title of Event: | World Congress on Engineering 2008 |
| Type of Event: | Other |
| Location of Event: | Imperial College London, England |
| Date(s) of Event: | Jul 02-04, 2008 |
| References: | [1] Chen Y, Beaulieu NC. Maximum likelihood estimation of SNR using digitally modulated signals. IEEE Trans. Wireless Comm, 6(1), 2007. [2] Brillinger DR. Maximum likelihood analysis of spike trains of interacting nerve cells. Biol. Cybern. 59: 189-200, 1988. [3] Brown EN, Barbieri R, Eden UT, and Frank LM. Likelihood methods for neural data analysis. In: Feng J, ed. Computational Neuroscience: A Comprehensive Approach. London: CRC, Chapter 9: 253-286, 2003. [4] Brown EN. Theory of Point Processes for Neural Systems. In: Chow CC, Gutkin B, Hansel D, Meunier C, Dalibard J, eds. Methods and Models in Neurophysics. Paris, Elsevier, Chapter 14: 691-726, 2005. [5] MacEvoy SP, Hanks TD, Paradiso MA Macaque V1 activity during natural vision: effects of natural scenes and saccades, J. Neurophys. 99: 460-472, 2008. [6] Lim HH, Anderson DJ. Auditory cortical responses to electrical stimulation of the inferior colliculus: implications for an auditory midbrain implant. J. Neurophys. 96(3):975-88, 2006. [7] MA Wilson MA, McNaughton BL Dynamics of the hippocampal ensemble code for space. Science, 26:1055-1058,1993. [8] Wirth S, Yanike M, Frank LM, Smith AC, Brown EN, Suzuki WA. Single neurons in the monkey hippocampus and learning of new associations. Science 300: 1578-1584, 2003. [9] Dayan P, and Abbott L. Theoretical Neuroscience, Oxford University Press, Oxford, 2001. [10] Shadlen, MN and Newsome, WT. The variable discharge of cortical neurons: implications for connectivity, computation, and information coding. J. Neurosci. 18(10): 3870-3896, 1998. [11] Softky WR, Koch C. The highly irregular firing of cortical cells is inconsistent with temporal integration of random EPSP’s. J. Neurosci. 13:334-350, 1993. [12] Teich MC, Johnson DH, Kumar AR, Turcott RG. Rate fluctuations and fractional power-law noise recorded from cells in the lower auditory pathway of the cat. Hear Res. 46:41–52, 1990. [13] Optican LM, Richmond BJ. Temporal encoding of two-dimensional patterns by single units in primate inferior temporal cortex. III. Information theoretic analysis. J. of Neurophysiol., 57(1), 162-178, 1987. [14] Rieke F, Warland D, de Ruyter van Steveninck RR, Bialek W. Spikes: exploring the neural code. MIT Press, Cambridge, USA, 1997. [15] Kass RE and Ventura V. A spike train probability model. Neural Comput. 13: 1713-1720, 2001. [16] Truccolo W, Eden UT, Fellow MR, Donoghue JP, Brown EN. A point process framework for relating neural spiking activity to spiking history, neural ensemble and extrinsic covariate effects. J. Neurophys. 93: 1074-1089, 2005. [17] Mittlböck M, Waldhör T. Adjustments for R2-measures for Poisson regression models. Computational Statistics and Data Analysis 34: 461-472, 2000. [18] Hastie T. A Closer Look at the Deviance, The American Statistician, Vol 41, No 1, pp 16-20, 1987. [19] Neter J, Kutner MH, Nachtsheim CJ, Wasserman W. Applied Linear Statistical Models. 4th ed, McGraw-Hill, 1999. [20] McCullagh P, Nelder A. Generalized Linear Models, 2nd ed., Chapman & Hall, 1989. [21] Kitagawa G, Gersch W. Smoothness Prior Analysis of Time Series. New York: Springer-Verlag, 1996. [22] Pawitan Y. In All Likelihood. Oxford University Press. 2001. [23] Daley D and Vere-Jones D. An Introduction to the Theory of Point Process. 2nd ed., Springer-Verlag, New York, 2003. [24] Czanner G, Eden UT, Wirth S, Yanike M, Suzuki WA, Brown EN. Analysis of between-trial and within-trial neural spiking dynamics. J. Neurophys., (Epub, Jan. 23) 2008, In Press. [25] Czanner G, Sarma SV, Eden UT, Wirth S, Yanike M, Suzuki WA, Brown EN. Statistical inference for singal-to-noise ratio for non-Gaussian systems with application to models of neural encoding. (abstract) Society for Neuroscience, 319.7, 2007. |
| URI: | http://wrap.warwick.ac.uk/id/eprint/43460 |
Actions (login required)
![]() |
View Item |
Tools
Tools

