The Library
From bench to bountiful harvests : a road map for the next decade of Arabidopsis research
Tools
Lavagi, Irene, Estelle, Mark, Weckwerth, Wolfram, Beynon, Jim, 1956- and Bastow, Ruth. (2012) From bench to bountiful harvests : a road map for the next decade of Arabidopsis research. The Plant Cell, Vol.24 (No.6). pp. 2240-2247. ISSN 1040-4651
|
Text
WRAP_Beynon_Plant Cell-2012-Lavagi-tpc.112.096982.pdf - Published Version Download (1254Kb) | Preview |
Official URL: http://dx.doi.org/10.1105/tpc.112.096982
Abstract
In the face of an increasing world population and climate instability, the demands for food and fuel will continue to rise. Plant science will be crucial to help meet these exponentially increasing requirements for food and fuel supplies. Fundamental plant research will play a major role in providing key advances in our understanding of basic plant processes that can then flow into practical advances through knowledge sharing and collaborations. The model plant Arabidopsis thaliana has played a major role in our understanding of plant biology, and the Arabidopsis community has developed many tools and resources to continue building on this knowledge. Drawing from previous experience of internationally coordinated projects, The international Arabidopsis community, represented by the Multinational Arabidopsis Steering Committee (MASC), has drawn up a road map for the next decade of Arabidopsis research to inform scientists and decision makers on the future foci of Arabidopsis research within the wider plant science landscape. This article provides a summary of the MASC road map.
| Item Type: | Journal Article |
|---|---|
| Subjects: | Q Science > QK Botany |
| Divisions: | Faculty of Science > Life Sciences (2010- ) |
| Library of Congress Subject Headings (LCSH): | Arabidopsis thaliana -- Research |
| Journal or Publication Title: | The Plant Cell |
| Publisher: | American Society of Plant Biologists |
| ISSN: | 1040-4651 |
| Date: | 2012 |
| Volume: | Vol.24 |
| Number: | No.6 |
| Page Range: | pp. 2240-2247 |
| Identification Number: | 10.1105/tpc.112.096982 |
| Status: | Peer Reviewed |
| Publication Status: | Published |
| Access rights to Published version: | Restricted or Subscription Access |
| Funder: | Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC) |
| Grant number: | BBG0214811 (BBSRC) |
| References: | Alonso, J.M., et al. (2003). Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653–657. Amtmann, A., Troufflard, S., and Armengaud, P. (2008). The effect of potassium nutrition on pest and disease resistance in plants. Physiol. Plant. 133: 682–691. Arabidopsis Genome Initiative. (2000). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796–815. Atwell, S., et al. (2010). Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465: 627–631. Baulcombe, D. (2004). RNA silencing in plants. Nature 431: 356–363. Beynon, J., Coupland, G., Graham, I., and Harter, K. (2008). 2020 European Vision for Plant Science, 2–3 June 2008, Bonn, Germany. http://www.arabidopsis.org/portals/masc/ 2020_European_Vision.pdf. (Accessed June 26, 2012.) Chini, A., Fonseca, S., Ferna´ ndez, G., Adie, B., Chico, J.M., Lorenzo, O., Garcı´a-Casado, G., Lo´ pez-Vidriero, I., Lozano, F.M., Ponce, M.R., Micol, J.L., and Solano, R. (2007). The JAZ family of repressors is the missing link in jasmonate signalling. Nature 448: 666–671. Corbesier, L., Vincent, C., Jang, S., Fornara, F., Fan, Q., Searle, I., Giakountis, A., Farrona, S., Gissot, L., Turnbull, C., and Coupland, G. (2007). FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316: 1030–1033. de Oliveira Dal’Molin, C.G., Quek, L.E., Palfreyman, R.W., Brumbley, S.M., and Nielsen, L.K. (2010). AraGEM, a genomescale reconstruction of the primary metabolic network in Arabidopsis. Plant Physiol. 152: 579–589. Dennis, L., Ecker, J., Gale, M., Harter, K., Kersey, P., Lee, S., Matsui, M., Millar, A., Parkin, I., van Sluys, M.A., and Traas, J. (2011). An International Model for the Future of Plant Science, March 2009, Banbury Center, USA. http://www.uni-tuebingen.de/plantphys/ AFGN/InternatModelFuturePlantSci.pdf. (Accessed June 26, 2012.) Dharmasiri, N., Dharmasiri, S., and Estelle, M. (2005a). The F-box protein TIR1 is an auxin receptor. Nature 435: 441–445. Dharmasiri, N., Dharmasiri, S., Weijers, D., Lechner, E., Yamada, M., Hobbie, L., Ehrismann, J.S., Ju¨ rgens, G., and Estelle, M. (2005b). Plant development is regulated by a family of auxin receptor F box proteins. Dev. Cell 9: 109–119. Fiehn, O., Kopka, J., Do¨ rmann, P., Altmann, T., Trethewey, R.N., and Willmitzer, L. (2000). Metabolite profiling for plant functional genomics. Nat. Biotechnol. 18: 1157–1161. Filiault, D.L., and Maloof, J.N. (2012). A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. PLoS Genet. 8: e1002589. Hamilton, A.J., and Baulcombe, D.C. (1999). A species of small antisense RNA in posttranscriptional gene silencing in plants. Science 286: 950–952. Hancock, A.M., Brachi, B., Faure, N., Horton, M.W., Jarymowycz, L.B., Sperone, F.G., Toomajian, C., Roux, F., and Bergelson, J. (2011). Adaptation to climate across the Arabidopsis thaliana genome. Science 334: 83–86. Heazlewood, J.L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D., and Schulze, W.X. (2008). PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 36 (Database issue): D1015–D1021. Ho, C.H., Lin, S.H., Hu, H.C., and Tsay, Y.F. (2009). CHL1 functions as a nitrate sensor in plants. Cell 138: 1184–1194. International Arabidopsis Informatics Consortium. (2010). An international bioinformatics infrastructure to underpin the Arabidopsis community. Plant Cell 22: 2530–2536. International Arabidopsis Informatics Consortium. (2012). Taking the next step: Building an Arabidopsis Information Portal. Plant Cell, in press. Joshi, H.J., et al. (2011). MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol. 155: 259–270. Kepinski, S., and Leyser, O. (2005). The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446–451. Li, L., Kim, B.G., Cheong, Y.H., Pandey, G.K., and Luan, S. (2006). A Ca(2)1 signaling pathway regulates a K(1) channel for low-K response in Arabidopsis. Proc. Natl. Acad. Sci. USA 103: 12625–12630. Lister, R., O’Malley, R.C., Tonti-Filippini, J., Gregory, B.D., Berry, C.C., Millar, A.H., and Ecker, J.R. (2008). Highly integrated singlebase resolution maps of the epigenome in Arabidopsis. Cell 133: 523–536. Ma, Y., Szostkiewicz, I., Korte, A., Moes, D., Yang, Y., Christmann, A., and Grill, E. (2009). Regulators of PP2C phosphatase activity function as abscisic acid sensors. Science 324: 1064–1068. Melotto, M., Mecey, C., Niu, Y., Chung, H.S., Katsir, L., Yao, J., Zeng, W., Thines, B., Staswick, P., Browse, J., Howe, G.A., and He, S.Y. (2008). A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein. Plant J. 55: 979–988. Multinational Arabidopsis Steering Committee. (2010). The Multinational Coordinated Arabidopsis thaliana Functional Genomics Project. http://www.arabidopsis.org/portals/masc/ 2010_MASC_Report.pdf. (Accessed June 26, 2012.) Multinational Arabidopsis Steering Committee. (2011). The Multinational Coordinated Arabidopsis thaliana Functional Genomics Project. http://www.arabidopsis.org/portals/masc/ 2011_MASC_Report.pdf. (Accessed June 26, 2012.) Multinational Arabidopsis Steering Committee. (2012). The Multinational Coordinated Arabidopsis thaliana Functional Genomics Project, in press. Park, S.Y., et al. (2009). Abscisic acid inhibits type 2C protein phosphatases via the PYR/ PYL family of START proteins. Science 324: 1068–1071. Poolman, M.G., Miguet, L., Sweetlove, L.J., and Fell, D.A. (2009). A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol. 151: 1570–1581. Remans, T., Nacry, P., Pervent, M., Filleur, S., Diatloff, E., Mounier, E., Tillard, P., Forde, B.G., and Gojon, A. (2006). The Arabidopsis NRT1.1 transporter participates in the signaling pathway triggering root colonization of nitrate-rich patches. Proc. Natl. Acad. Sci. USA 103: 19206–19211. Ronald, P. (2011). Plant genetics, sustainable agriculture and global food security. Genetics 188: 11–20. Tamaki, S., Matsuo, S., Wong, H.L., Yokoi, S., and Shimamoto, K. (2007). Hd3a protein is a mobile flowering signal in rice. Science 316: 1033–1036. Thines, B., Katsir, L., Melotto, M., Niu, Y., Mandaokar, A., Liu, G., Nomura, K., He, S.Y., Howe, G.A., and Browse, J. (2007). JAZ repressor proteins are targets of the SCF (COI1) complex during jasmonate signalling. Nature 448: 661–665. Ueguchi-Tanaka, M., Ashikari, M., Nakajima, M., Itoh, H., Katoh, E., Kobayashi, M., Chow, T.Y., Hsing, Y.I., Kitano, H., Yamaguchi, I., and Matsuoka, M. (2005). GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature 437: 693–698. Weckwerth, W. (2011a). Green systems biology— From single genomes, proteomes and metabolomes to ecosystems research and biotechnology. J. Proteomics 75: 284–305. Weckwerth, W. (2011b). Unpredictability of metabolism—the key role of metabolomics science in combination with next-generation genome sequencing. Anal. Bioanal. Chem. 400: 1967–1978. Weckwerth, W., Baginsky, S., van Wijk, K., Heazlewood, J.L., and Millar, H. (2008). The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. J. Proteome Res. 7: 4209–4210. Weinl, S., and Kudla, J. (2009). The CBL-CIPK Ca(21)-decoding signaling network: Function and perspectives. New Phytol. 184: 517–528. Xu, J., Li, H.D., Chen, L.Q., Wang, Y., Liu, L.L., He, L., and Wu, W.H. (2006). A protein kinase, interacting with two calcineurin B-like proteins, regulates K1 transporter AKT1 in Arabidopsis. Cell 125: 1347– 1360. Zhu, J.K. (2000). Genetic analysis of plant salt tolerance using Arabidopsis. Plant Physiol. 124: 941–948. |
| URI: | http://wrap.warwick.ac.uk/id/eprint/49238 |
Actions (login required)
![]() |
View Item |
Tools
Tools

