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Towards a reference plant trait ontology for modeling knowledge of plant traits and phenotypes
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Arnaud, E., Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., Skofic, M., Bastow, Ruth, Jaiswal, P., Mueller, L. and McLaren, G. (2012) Towards a reference plant trait ontology for modeling knowledge of plant traits and phenotypes. In: 4th International Conference on Knowledge Engineering and Ontology Development, KEOD 2012, Barcelona, Spain, 4-7 Oct 2012. Published in: KEOD 2012 - Proceedings of the International Conference on Knowledge Engineering and Ontology Development ISBN 9789898565303.
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Abstract
Ontology engineering and knowledge modeling for the plant sciences is expected to contribute to the understanding of the basis of plant traits that determine phenotypic expression in a given environment. Several crop- or clade-specific plant trait ontologies have been developed to describe plant traits important for agriculture in order to address major scientific challenges such as food security. We present three successful species and/or clade-specific ontologies which address the needs of crop scientists to quickly access a wide range of trait related data, but their scope limits their interoperability with one another. In this paper, we present our vision of a species-neutral and overarching Reference Plant Trait Ontology which would be the basis for linking the disparate knowledge domains and that will support data integration and data mining across species.
| Item Type: | Conference Item (Paper) | ||||
|---|---|---|---|---|---|
| Divisions: | Faculty of Science, Engineering and Medicine > Science > Life Sciences (2010- ) | ||||
| Journal or Publication Title: | KEOD 2012 - Proceedings of the International Conference on Knowledge Engineering and Ontology Development | ||||
| ISBN: | 9789898565303 | ||||
| Official Date: | 2012 | ||||
| Dates: |
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| Status: | Peer Reviewed | ||||
| Publication Status: | Published | ||||
| Access rights to Published version: | Restricted or Subscription Access | ||||
| Conference Paper Type: | Paper | ||||
| Title of Event: | 4th International Conference on Knowledge Engineering and Ontology Development, KEOD 2012 | ||||
| Type of Event: | Conference | ||||
| Location of Event: | Barcelona, Spain | ||||
| Date(s) of Event: | 4-7 Oct 2012 | ||||
| Related URLs: |
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