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Watching the hands of the Arabidopsis biological clock

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Davis, Seth J. and Millar, A. J. (Andrew J.). (2001) Watching the hands of the Arabidopsis biological clock. Genome Biology, Vol.2 (No.3). ISSN 1474-7596

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Official URL: http://dx.doi.org/10.1186/gb-2001-2-3-reviews1008

Abstract

Oligonucleotide and cDNA microarrays have been used to analyse the mRNA levels of 8,000 genes in Arabidopsis thaliana throughout the day/night cycle. Genes involved in signal transduction and in various metabolic pathways were found to be coordinately regulated by circadian rhythms and/or by light.

Item Type: Journal Article
Subjects: Q Science > QK Botany
Q Science > QH Natural history > QH426 Genetics
Divisions: Faculty of Science > Life Sciences (2010- ) > Biological Sciences ( -2010)
Library of Congress Subject Headings (LCSH): Arabidopsis thaliana -- Genetics, Arabidopsis thaliana -- Genome mapping, Biological rhythms in plants, Plant genetics, Circadian rhythms
Journal or Publication Title: Genome Biology
Publisher: BioMed Central Ltd.
ISSN: 1474-7596
Date: 5 March 2001
Volume: Vol.2
Number: No.3
Identification Number: 10.1186/gb-2001-2-3-reviews1008
Status: Peer Reviewed
Access rights to Published version: Open Access
References: # Somers DE: The physiology and molecular bases of the plant circadian clock. Plant Physiol 1999, 121:9-19. # Engelmann W, Johnsson A: Rhythms in organ movement. In: Biological Rhythms and Photoperiodism in Plants. Edited by Lumsden PJ, Millar AJ. Oxford: BIOS Scientific; 1998. # Webb AAR: Stomatal rhythms. In: Biological Rhythms and Photoperiodism in Plants. Edited by Lumsden PJ, Millar AJ. Oxford: BIOS Scientific; 1998. # Samach A, Coupland G: Time measurement and the control of flowering in plants. BioEssays 2000, 22:38-47. # Kreps JA, Kay SA: Coordination of plant metabolism and development by the circadian clock. Plant Cell 1997, 9:1235-1244. # Harmer SL, Hogenesch LB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA: Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 2000, 290:2110-2113. # Schaffer R, Landgraf J, Monica A, Simon B, Larson M, Wisman E: Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 2001, 13:113-123. # Downloadable files of differentially expressed genes showing diurnal or circadian rhythm [http://www.prl.msu.edu/circl]. # Arabidopsis Functional Genetics Consortium (Stanford University) [http://AFGC.Stanford.EDU/afgc_html/site2.htm]. # Deikman J, Hammer PE: Induction of anthocyanin accumulation by cytokinins in Arabidopsis thaliana. Plant Physiol 1995, 108:47-57. # Pittendrigh CS: Temporal organization: reflections of a Darwinian clock-watcher. Annu Rev Physiol 1993, 55:16-54. # Millar AJ, Kay SA: Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc Natl Acad Sci USA 1996, 93:15491-15496. # Arabidopsis Genome Initiative : Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815. # Newman T, De Bruijn FJ, Green P, Keegstra K, Kende H, McIntosh L, Ohlrogge J, Raikhel N, Somerville S, Thomashow M, et al.: Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol 1994, 106:1241-1255.
URI: http://wrap.warwick.ac.uk/id/eprint/626

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