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htSeqTools : high-throughput sequencing quality control, processing and visualization in R
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Planet, E., Attolini, C. S.-O., Reina, O., Flores, O. and Rossell, David (2012) htSeqTools : high-throughput sequencing quality control, processing and visualization in R. Bioinformatics, Volume 28 (Number 4). pp. 589-590. doi:10.1093/bioinformatics/btr700
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Official URL: http://dx.doi.org/10.1093/bioinformatics/btr700
Abstract
We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists.
| Item Type: | Journal Article | ||||
|---|---|---|---|---|---|
| Divisions: | Faculty of Science > Statistics | ||||
| Journal or Publication Title: | Bioinformatics | ||||
| Publisher: | Oxford University Press | ||||
| ISSN: | 1367-4803 | ||||
| Official Date: | 15 February 2012 | ||||
| Dates: |
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| Volume: | Volume 28 | ||||
| Number: | Number 4 | ||||
| Number of Pages: | 1 | ||||
| Page Range: | pp. 589-590 | ||||
| DOI: | 10.1093/bioinformatics/btr700 | ||||
| Status: | Peer Reviewed | ||||
| Publication Status: | Published | ||||
| Access rights to Published version: | Restricted or Subscription Access |
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