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Interplay of non-covalent interactions in ribbon-like guanosine self-assembly : a NMR crystallography study

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Reddy, G. N. Manjunatha , Marsh, Andrew, Davis, Jeffery T., Masiero, Stefano and Brown, Steven P. (2015) Interplay of non-covalent interactions in ribbon-like guanosine self-assembly : a NMR crystallography study. Crystal Growth & Design, 15 (12). pp. 5945-5954. acs.cgd.5b01440. doi:10.1021/acs.cgd.5b01440 ISSN 1528-7483.

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Official URL: http://dx.doi.org/10.1021/acs.cgd.5b01440

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Abstract

A NMR crystallography study shows how intermolecular NH...O, NH...N, OH...N, OH...O and CH–π interactions stabilize the ribbon-like supramolecular structures of three different guanosine derivatives; guanosine dihydrate (G), 3/, 5/–O– dipropanolyl deoxyguanosine (dGC(3)2) and 3/, 5/ –O– isopropylideneguanosine hemihydrate (Gace). Experimental solid-state 1H NMR spectra obtained at 20 T using fast Magic-Angle Spinning (MAS), here at 75 kHz, are presented for a dihydrate of G. For each guanosine derivative, the role of specific interactions is probed by means of NMR chemical shifts calculated using the Density Functional Theory (DFT) Gauge-Including Projector-Augmented Wave (GIPAW) approach for the full crystal and extracted isolated single molecules. Specifically, the isolated molecule to full crystal transformations result in net changes in the GIPAW calculated 1H NMR chemical shifts of up to 8 ppm for OH...O, up to 6.5 ppm for NH...N and up to 4.6 ppm for NH...O hydrogen bonds; notably, the presence of water molecules in G and Gace reinforces the molecular stacking through strong OH...O hydrogen bonds. The sugar conformations are markedly different in G, dG(C3)2 and Gace, and it is shown that the experimental 13C solid-state NMR chemical shift at the C8 position is a reliable indicator of a ‘syn’ (> 135 ppm) or ‘anti’ (< 135 ppm) conformer.

Item Type: Journal Article
Subjects: Q Science > QC Physics
Q Science > QD Chemistry
Q Science > QE Geology
Divisions: Faculty of Science, Engineering and Medicine > Science > Chemistry
Faculty of Science, Engineering and Medicine > Science > Physics
Faculty of Science, Engineering and Medicine > Science > Centre for Scientific Computing
Library of Congress Subject Headings (LCSH): Magnetic resonance imaging, Crystals -- Structure -- Research, Crystallography -- Research
Journal or Publication Title: Crystal Growth & Design
Publisher: American Chemical Society
ISSN: 1528-7483
Official Date: 4 November 2015
Dates:
DateEvent
8 October 2015Submitted
4 November 2015Accepted
4 November 2015Available
Volume: 15
Number: 12
Page Range: pp. 5945-5954
Article Number: acs.cgd.5b01440
DOI: 10.1021/acs.cgd.5b01440
Status: Peer Reviewed
Publication Status: Published
Access rights to Published version: Open Access (Creative Commons)
Grant number: EP/K003674/1 (EPSRC), EP/J010510/1 (EPSRC)
RIOXX Funder/Project Grant:
Project/Grant IDRIOXX Funder NameFunder ID
EP/K003674/1[EPSRC] Engineering and Physical Sciences Research Councilhttp://dx.doi.org/10.13039/501100000266
EP/J010510/1[EPSRC] Engineering and Physical Sciences Research Councilhttp://dx.doi.org/10.13039/501100000266
UNSPECIFIEDBiotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
UNSPECIFIEDEuropean Regional Development Fundhttp://dx.doi.org/10.13039/501100008530
UNSPECIFIEDAdvantage West Midlands (AWM)UNSPECIFIED
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