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Relative affinity constants by electrospray ionization and Fourier transform ion cyclotron resonance mass spectrometry: calmodulin binding to peptide analogs of myosin light chain kinase

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Nousiainen, Marjaana, Derrick, Peter J. , Lafitte, Daniel and Vainiotalo, Pirjo. (2003) Relative affinity constants by electrospray ionization and Fourier transform ion cyclotron resonance mass spectrometry: calmodulin binding to peptide analogs of myosin light chain kinase. Biophysical Journal, Vol.85 (No.1). pp. 491-500. ISSN 0006-3495

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Official URL: http://dx.doi.org/10.1016/S0006-3495(03)74494-4

Abstract

Synthetic RS20 peptide and a set of its point-mutated peptide analogs have been used to analyze the interactions between calmodulin (CaM) and the CaM-binding sequence of smooth-muscle myosin light chain kinase both in the presence and the absence of Ca2+. Particular peptides, which were expected to have different binding strengths, were chosen to address the effects of electrostatic and bulky mutations on the binding affinity of the RS20 sequence. Relative affinity constants for protein/ligand interactions have been determined using electrospray ionization and Fourier transform ion cyclotron resonance mass spectrometry. The results evidence the importance of electrostatic forces in interactions between CaM and targets, particularly in the presence of Ca2+, and the role of hydrophobic forces in contributing additional stability to the complexes both in the presence and the absence of Ca2+.

Item Type: Journal Article
Subjects: Q Science > QD Chemistry
Divisions: Faculty of Science > Chemistry
Library of Congress Subject Headings (LCSH): Ion cyclotron resonance spectrometry, Electrospray ionization mass spectrometry, Fourier transform nuclear magnetic resonance spectroscopy, Peptides -- Analysis, Electrostatics
Journal or Publication Title: Biophysical Journal
Publisher: Biophysical Society
ISSN: 0006-3495
Date: July 2003
Volume: Vol.85
Number: No.1
Page Range: pp. 491-500
Identification Number: 10.1016/S0006-3495(03)74494-4
Status: Peer Reviewed
Access rights to Published version: Open Access
Funder: Engineering and Physical Sciences Research Council (EPSRC), Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC), Graduate School in Chemical Engineering (Finland) (GSCE)
Grant number: 88/9708907 (BBSRC),
References: Afshar et al., 1994 M. Afshar, L.S.D. Caves, L. Guimard, R.E. Hubbard, B. Calas, G. Grassy and J. Haiech, Investigating the high affinity and low sequence specificity of calmodulin binding to its targets, J. Mol. Biol. 244 (1994), pp. 554–571. Babu et al., 1988 Y.S. Babu, C.E. Bugg and W.J. Cook, Structure of calmodulin refined at 2.2 A resolution, J. Mol. Biol. 204 (1988), pp. 191–204. Barth et al., 1998 A. Barth, S.R. Martin and P.M. Bayley, Specificity and symmetry in the interaction of calmodulin domains with the skeletal muscle myosin light chain kinase target sequence, J. Biol. Chem 273 (1998), pp. 2174–2183. Chattopadhyaya et al., 1992 R. Chattopadhyaya, W.E. Meador, A.R. Means and F.A. Quiocho, Calmodulin structure refined at 1.7 A resolution, J. Mol. Biol. 228 (1992), pp. 1177–1192. Craig et al., 1987 T.A. Craig, D.M. Watterson, F.G. Prendergast, J. Haiech and D.M. Roberts, Site-specific mutagenesis of the alpha-helices of calmodulin. Effects of altering a charge cluster in the helix that links the two halves of calmodulin, J. Biol. Chem 262 (1987), pp. 3278–3284. Crivici and Ikura, 1995 A. Crivici and M. Ikura, Molecular and structural basis of target recognition by calmodulin, Annu. Rev. Biophys. Biomol. Struct. 24 (1995), pp. 85–116. Daniel et al., 2002 J.M. Daniel, S.D. Friess, S. Rajagopalan, S. Wendt and R. Zenobi, Quantitative determination of noncovalent binding interactions using soft ionization mass spectrometry, Int. J. Mass Spectrom. 216 (2002), pp. 1–27. Gao et al., 1999 J. Gao, Q. Wu, J. Carbeck, Q.P. Lei, R.D. Smith and G.M. Whitesides, Probing the energetics of dissociation of carbonic anhydrase-ligand complexes in the gas phase, Biophys. J. 76 (1999), pp. 3253–3260. Gilli et al., 1998 R. Gilli, D. Lafitte, C. Lopez, M.C. Kilhoffer, A. Makarov, C. Briand and J. Haiech, Thermodynamic analysis of calcium and magnesium binding to calmodulin, Biochemistry 37 (1998), pp. 5450–5456. Guimard et al., 1994 L. Guimard, M. Afshar, J. Haiech and B. Calas, A protein/peptide assay using peptide-resin adduct: application to the calmodulin/RS20 complex, Anal. Biochem. 221 (1994), pp. 118–126. Hill et al., 2000 T.J. Hill, D. Lafitte, J.I. Wallace, H.J. Cooper, P.O. Tsvetkov and P.J. Derrick, Calmodulin-peptide interaction: apocalmodulin binding to the myosin light chain kinase target site, Biochemistry 39 (2000), pp. 7284–7290. Hunt et al., 1998 S.M. Hunt, M.M. Sheil, M. Belov and P.J. Derrick, Probing the effects of cone potential in the electrospray ion source: consequences for the determination of molecular weight distributions of synthetic polymers, Anal. Chem. 70 (1998), pp. 1812–1822. Hunter et al., 1997 C.L. Hunter, A.G. Mauk and D.J. Douglas, Dissociation of heme from myoglobin and cytochrome b5: comparison of behavior in solution and the gas phase, Biochemistry 36 (1997), pp. 1018–1025. Ikura et al., 1992 M. Ikura, G.M. Clore, A.M. Gronenborn, G. Zhu, C.B. Klee and A. Bax, Solution structure of a calmodulin-target peptide complex by multidimensional NMR, Science 256 (1992), pp. 632–638. Izumi et al., 2001 Y. Izumi, S. Kuwamoto, Y. Jinbo and H. Yoshino, Increase in the molecular weight and radius of gyration of apocalmodulin induced by binding of target peptide: evidence for complex formation, FEBS Lett. 495 (2001), pp. 126–130. Jørgensen et al., 1998 T.J.D. Jørgensen, P. Roepstorff and A.J.R. Heck, Direct determination of solution binding constants for noncovalent complexes between bacterial cell wall peptide analogues and vancomycin group antibiotics by electrospray ionization mass spectrometry, Anal. Chem. 70 (1998), pp. 4427–4432. Jørgensen et al., 1999a T.J.D. Jørgensen, D. Delforge, J. Remacle, G. Bojesen and P. Roepstorff, Collision-induced dissociation of noncovalent complexes between vancomycin antibiotics and peptide ligand stereoisomers: evidence for molecular recognition in the gas phase, Int. J. Mass Spectrom. 188 (1999), pp. 63–85. Jørgensen et al., 1999b T.J.D. Jørgensen, T. Staroske, P. Roepstorff, D.H. Williams and A.J.R. Heck, Subtle differences in molecular recognition between modified glycopeptide antibiotics and bacterial receptor peptides identified by electrospray ionization mass spectrometry, J. Chem. Soc. Perkin Trans. 2 (1999), pp. 1859–1863. Kilhoffer et al., 1992 M.C. Kilhoffer, T.J. Lukas, D.M. Watterson and J. Haiech, The heterodimer calmodulin: myosin light-chain kinase as a prototype vertebrate calcium signal transduction complex, Biochim. Biophys. Acta 1160 (1992), pp. 8–15. Lukas et al., 1986 T.J. Lukas, W.H. Burgess, F.G. Prendergast, W. Lau and D.M. Watterson, Calmodulin binding domains: characterization of a phosphorylation and calmodulin binding site from myosin light chain kinase, Biochemistry 25 (1986), pp. 1458–1464. Martin et al., 2000 S.R. Martin, L. Masino and P.M. Bayley, Enhancement by Mg2+ of domain specificity in Ca2+-dependent interactions of calmodulin with target sequences, Protein Sci. 9 (2000), pp. 2477–2488. Meador et al., 1992 W.E. Meador, A.R. Means and F.A. Quiocho, Target enzyme recognition by calmodulin: 2.4 A structure of a calmodulin-peptide complex, Science 257 (1992), pp. 1251–1255. Milos et al., 1989 M. Milos, M. Comte, J.J. Schaer and J.A. Cox, Evidence for four capital and six auxiliary cation-binding sites on calmodulin: divalent cation interactions monitored by direct binding and microcalorimetry, J. Inorg. Biochem. 36 (1989), pp. 11–25. Mirzoeva et al., 1999 S. Mirzoeva, S. Weigand, T.J. Lukas, L. Shuvalova, W.F. Anderson and D.M. Watterson, Analysis of the functional coupling between calmodulin's calcium binding and peptide recognition properties, Biochemistry 38 (1999), pp. 3936–3947. Nousiainen et al., 2001 M. Nousiainen, X. Feng, P. Vainiotalo and P.J. Derrick, Calmodulin-RS20-Ca4 complex in the gas phase: electrospray ionisation and Fourier transform ion cyclotron resonance, Eur. J. Mass Spectrom. 7 (2001), pp. 393–398. Ohki et al., 1993 S. Ohki, U. Iwamoto, S. Aimoto, M. Yazawa and K. Hikichi, Mg2+ inhibits formation of 4Ca2+-calmodulin-enzyme complex at lower Ca2+ concentration. 1H and 113Cd NMR studies, J. Biol. Chem. 268 (1993), pp. 12388–12392. Ohki et al., 1997 S. Ohki, M. Ikura and M. Zhang, Identification of Mg2+-binding sites and the role of Mg2+ on target recognition by calmodulin, Biochemistry 36 (1997), pp. 4309–4316. O’Neil and DeGrado, 1990 K.T. O’Neil and W.F. DeGrado, How calmodulin binds its targets: sequence independent recognition of amphiphilic alpha-helices, Trends Biochem. Sci. 15 (1990), pp. 59–64. Palmblad et al., 2000 M. Palmblad, K. Håkansson, P. Håkansson, X. Feng, H.J. Cooper, A.E. Giannakopulos, P.S. Green and P.J. Derrick, A 9.4 T Fourier transform ion cyclotron resonance mass spectrometer: description and performance, Eur. J. Mass Spectrom. 6 (2000), pp. 267–275. Persechini and Kretsinger, 1988 A. Persechini and R.H. Kretsinger, The central helix of calmodulin functions as a flexible tether, J. Biol. Chem. 263 (1988), pp. 12175–12178. Roberts et al., 1985 D.M. Roberts, R. Crea, M. Malecha, G. Alvarado-Urbina, R.H. Chiarello and D.M. Watterson, Chemical synthesis and expression of a calmodulin gene designed for site-specific mutagenesis, Biochemistry 24 (1985), pp. 5090–5098. Robinson et al., 1996 C.V. Robinson, E.W. Chung, B.B. Kragelund, J. Knudsen, R.T. Aplin, F.M. Poulsen and C.M. Dobson, Probing the nature of noncovalent interaction by mass spectrometry. A study of protein–CoA ligand binding and assembly, J. Am. Chem. Soc. 118 (1996), pp. 8646–8653. Rostom et al., 2000 A.A. Rostom, J.R.H. Tame, J.E. Ladbury and C.V. Robinson, Specificity and interactions of the protein OppA: partitioning solvent binding effects using mass spectrometry, J. Mol. Biol. 296 (2000), pp. 269–279. Tsvetkov et al., 1999 P.O. Tsvetkov, I.I. Protasevich, R. Gilli, D. Lafitte, V.M. Lobachov, J. Haiech, C. Briand and A.A. Makarov, Apocalmodulin binds to the myosin light chain kinase calmodulin target site, J. Biol. Chem. 274 (1999), pp. 18161–18164. Wu et al., 1997 Q. Wu, J. Gao, D. Joseph-McCarthy, G.B. Sigal, J.E. Bruce, G.M. Whitesides and R.D. Smith, Carbonic anhydrase–inhibitor binding: from solution to the gas phase, J. Am. Chem. Soc. 119 (1997), pp. 1157–1158. Yuan et al., 1998 T. Yuan, A.M. Weljie and H.J. Vogel, Tryptophan fluorescence quenching by methionine and selenomethionine residues of calmodulin: orientation of peptide and protein binding, Biochemistry 37 (1998), pp. 3187–3195.
URI: http://wrap.warwick.ac.uk/id/eprint/912

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