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SimMLST: simulation of multi-locus sequence typing data under a neutral model
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Didelot, Xavier, Lawson, Daniel J. and Falush, Daniel (2009) SimMLST: simulation of multi-locus sequence typing data under a neutral model. Bioinformatics, Vol.25 (No.11). pp. 1442-1444. doi:10.1093/bioinformatics/btp145 ISSN 1367-4803.
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Official URL: http://dx.doi.org/10.1093/bioinformatics/btp145
Abstract
Multi-locus sequence typing (MLST) is a widely used method of characterization of bacterial isolates. It has been applied to over 50 000 isolates in over 50 different species. Here, we present a coalescent method to jointly simulate MLST data and the clonal genealogy that gave rise to the sample.
Item Type: | Journal Article | ||||
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Subjects: | Q Science > QA Mathematics > QA76 Electronic computers. Computer science. Computer software Q Science > QD Chemistry T Technology > TP Chemical technology Q Science > QH Natural history > QH301 Biology Q Science > QA Mathematics |
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Divisions: | Faculty of Science, Engineering and Medicine > Science > Statistics | ||||
Journal or Publication Title: | Bioinformatics | ||||
Publisher: | Oxford University Press | ||||
ISSN: | 1367-4803 | ||||
Official Date: | 1 June 2009 | ||||
Dates: |
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Volume: | Vol.25 | ||||
Number: | No.11 | ||||
Number of Pages: | 3 | ||||
Page Range: | pp. 1442-1444 | ||||
DOI: | 10.1093/bioinformatics/btp145 | ||||
Status: | Peer Reviewed | ||||
Publication Status: | Published | ||||
Access rights to Published version: | Restricted or Subscription Access | ||||
Funder: | Wellcome Trust |
Data sourced from Thomson Reuters' Web of Knowledge
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