2021

Rangel-Pineros, Guillermo, Millard, Andrew D., Michniewski, Slawomir, Scanlan, David J. , Sirén, Kimmo, Reyes, Alejandro, Petersen, Bent, Clokie, Martha R. J. and Sicheritz-Pontén, Thomas (2021) From trees to clouds : PhageClouds for fast comparison of ∼640,000 phage genomic sequences and host-centric visualization using genomic network graphs. PHAGE : Therapy, Applications, and Research, 2 (4). pp. 194-203. doi:10.1089/phage.2021.0008

2016

Rihtman, Branko, Meaden, Sean, Clokie, Martha R. J., Koskella, Britt and Millard, Andrew D. (2016) Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes. PeerJ, 4 . pp. 1-21. e2055. doi:10.7717/peerj.2055

2015

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

Hargreaves, Katherine R., Otieno, James R., Thanki, Anisha, Blades, Matthew J., Millard, Andrew D., Browne, Hilary P., Lawley, Trevor D. and Clokie, Martha R. J. (2015) As clear as mud? Determining the diversity and prevalence of prophages in the draft genomes of estuarine isolates of Clostridium difficile. Genome Biology and Evolution, Volume 7 (Number 7). pp. 1842-1855. doi:10.1093/gbe/evv094

Chan, Yi-Wah, Millard, Andrew D., Wheatley, Peter J., Holmes, Antony B., Mohr, Remus, Whitworth, Anna L., Mann, Nicholas H., Larkum, Anthony W. D., Hess, Wolfgang R., Scanlan, David J. and Clokie, Martha R. J. (2015) Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacteriumAcaryochloris marina. Environmental Microbiology, 17 (11). pp. 4239-4252. doi:10.1111/1462-2920.12735

2011

Chan, Yi-Wah, Mohr, Remus, Millard, Andrew D., Holmes, Antony B., Larkum, Anthony W. D., Whitworth, Anna L., Mann, Nicholas H., Scanlan, David J., Hess, Wolfgang R. and Clokie, Martha R. J. (2011) Discovery of cyanophage genomes which contain mitochondrial DNA polymerase. Molecular Biology and Evolution, Vol.28 (No.8). pp. 2269-2274. doi:10.1093/molbev/msr041

2010

Clokie, Martha R. J., Millard, Andrew D. and Mann, Nicholas H. (2010) T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virology Journal, Volume 7 . Article number 291. doi:10.1186/1743-422X-7-291

Jia, Ying, Shan, Jinyu, Millard, Andrew D., Clokie, Martha R. J. and Mann, Nicholas H. (2010) Light-dependent adsorption of photosynthetic cyanophages to Synechococcus sp. WH7803. FEMS Microbiology Letters, 310 (2). pp. 120-126. doi:10.1111/j.1574-6968.2010.02054.x

Millard, Andrew D., Gierga, G., Clokie, Martha R. J., Evans, David J., Hess, Wolfgang R. and Scanlan, David J. (2010) An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease. ISME Journal, The, Vol.2010 (No.4). pp. 1121-1135. doi:10.1038/ismej.2010.43

2008

Shan, Jinyu, Jia, Ying, Clokie, Martha R. J. and Mann, Nicholas H. (2008) Infection by the 'photosynthetic' phage S-PM2 induces increased synthesis of phycoerythrin in Synechococcus sp WH7803. FEMS Microbiology Letters, Vol.283 (No.2). pp. 154-161. doi:10.1111/j.1574-6968.2008.01148.x

Clokie, Martha R. J., Thalassinos, Konstantinos, Boulanger, Pascale, Slade, Susan E., Stoilova-McPhie, Svetla, Cane, Matt, Scrivens, James H. and Mann, Nicholas H. (2008) A proteomic approach to the identification of the major virion structural proteins of the marine cyanomyovirus S-PM2. Microbiology, Vol.154 (Part 6). pp. 1775-1782. doi:10.1099/mic.0.2007/016261-0

Bryan, Michael J., Burroughs, Nigel John, Spence, Edward M., Clokie, Martha R. J., Mann, Nicholas H. and Bryan, Samantha J. (2008) Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PL o S One, Vol.3 (No.4). doi:10.1371/journal.pone.0002048

Sandaa, Ruth-Anne, Clokie, Martha R. J. and Mann, Nicholas H. (2008) Photosynthetic genes in viral populations with a large genomic size range from Norwegian coastal waters. FEMS Microbiology Ecology, 63 (1). pp. 2-11. doi:DOI:10.1111/j.1574-6941.2007.00400.x

2007

Chan, Yi-Wah, Nenninger, Anja, Clokie, Samuel J. H., Mann, Nicholas H., Scanlan, David J. , Whitworth, Anna L. and Clokie, Martha R. J. (2007) Pigment composition and adaptation in free-living and symbiotic strains of Acaryochloris marina. FEMS Microbiology Ecology, Vol.61 (No.1). pp. 65-73. doi:10.1111/j.1574-6941.2007.00320.x

2006

Clokie, Martha R. J. and Mann, Nicholas H. (2006) Marine cyanophages and light Marine cyanophages and light. Environmental Microbiology, 8 (12). pp. 2074-2082. doi:10.1111/j.1462-2920.2006.01171.x

Clokie, Martha R. J., Millard, Andrew D., Mehta, Jaytry Y. and Mann, Nicholas H. (2006) Virus isolation studies suggest short-term variations in abundance in natural cyanophage populations of the Indian Ocean. Journal of the Marine Biological Association of the United Kingdom, Vol.86 (No.3). pp. 499-505. doi:10.1017/S0025315406013415

Clokie, Martha R. J., Shan, Jinyu, Bailey, Shaun, Jia, Ying, Krisch, Henry M., West, Stephen and Mann, Nicholas H. (2006) Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium. Environmental Microbiology, Vol.8 (No.5). pp. 827-835. doi:10.1111/j.1462-2920.2005.00969.x

2005

Mann, Nicholas H., Clokie, Martha R. J., Millard, Andrew D., Cook, A. (Annabel), Wilson, W. H. (William H.), Wheatley, P. J., Letarov, Andrey and Krish, H. M (2005) The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains. Journal of Bacteriology, Volume 187 (Number 9). pp. 3188-3200. doi:10.1128/JB.187.9.3188-3200.2005

2004

Bailey, Shaun, Clokie, Martha R. J., Millard, Andrew D. and Mann, Nicholas H. (2004) Cyanophage infection and photoinhibition in marine cyanobacteria. Research in Microbiology, Volume 155 (Number 9). pp. 720-725. doi:10.1016/j.resmic.2004.06.002

Millard, Andrew D., Clokie, Martha R. J., Shub, David A. and Mann, Nicholas H. (2004) Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proceedings of the National Academy of Sciences of the United States of America, Volume 101 (Number 30). pp. 11007-11012. doi:10.1073/pnas.0401478101

2003

Clokie, Martha R. J., Millard, Andrew D., Wilson, William H. and Mann, Nicholas H. (2003) Encapsidation of host DNA by bacteriophages infecting marine Synechococcus strains. In: 8th Symposium on Aquatic Microbial Ecology (SAME-8), Sicily, Italy, 25-29 Oct 2002. Published in: FEMS Microbiology Ecology, Volume 46 (Number 3). pp. 349-352. ISSN 0168-6496. doi:10.1016/S0168-6496(03)00247-2

Mann, Nicholas H., Cook, A. (Annabel), Millard, Andrew D., Bailey, S. (Shaun) and Clokie, Martha R. J. (2003) Marine ecosystems : bacterial photosynthesis genes in a virus. Nature, Volume 424 (Number 6950). Article number 741. doi:10.1038/424741a