2020

White, Connor, Pellis, Lorenzo, Keeling, Matthew James and Penman, Bridget S. (2020) Detecting HLA-infectious disease associations for multi-strain pathogens. Infection, Genetics and Evolution, 83 . 104344. doi:10.1016/j.meegid.2020.104344

2018

Chapman, Lloyd A. C., Jewell, Chris P., Spencer, Simon E. F., Pellis, Lorenzo, Datta, Samik, Chowdhury, Rajib, Bern, Caryn, Medley, Graham and Hollingsworth, T. Déirdre (2018) The role of case proximity in transmission of visceral leishmaniasis in a highly endemic village in Bangladesh. PLoS Neglected Tropical Diseases, 12 (10). e0006453. doi:10.1371/journal.pntd.0006453

2017

Atkins, Katie, Baguelin, Marc, Brand, Samuel, Jit, Mark, Keeling, Matthew James, Kibinge, Nelson, Kinyanjui, Timothy, Medley, Graham, Melegaro, Alessia, Munywoki, Patrick, Nokes, D. James, Panovska-Griffiths, Jasmina, Pan-Ngum, Wurichada , Pellis, Lorenzo and White, Lisa (2017) RSV modelling meeting. University of Warwick, Coventry: School of Life Science and Zeeman Institute SBIDER Centre, University of Warwick, UK and KEMRI-Wellcome Trust Research Programme , Kilifi, Kenya. (Unpublished)

2016

Keeling, Matthew James, House, Thomas A., Cooper, A. J. and Pellis, Lorenzo (2016) Systematic approximations to susceptible-infectious-susceptible dynamics on networks. PLoS Computational Biology, 12 (12). e1005296. doi:10.1371/journal.pcbi.1005296

Lythgoe, Katrina A., Blanquart, François, Pellis, Lorenzo and Fraser, Christophe (2016) Large variations in HIV-1 viral load explained by shifting-mosaic metapopulation dynamics. PLoS Biology, 14 (10). e1002567. doi:10.1371/journal.pbio.1002567

Kinyanjui, Timothy M., Pellis, Lorenzo and House, Thomas A. (2016) Information content of household-stratified epidemics. Epidemics, 16 . pp. 17-26.

Ball, Frank, Pellis, Lorenzo and Trapman, Pieter (2016) Reproduction numbers for epidemic models with households and other social structures II : comparisons and implications for vaccination. Mathematical Biosciences, 274 . pp. 108-139. doi:10.1016/j.mbs.2016.01.006

2015

Pellis, Lorenzo, House, Thomas A. and Keeling, Matthew James (2015) Exact and approximate moment closures for non-Markovian network epidemics. Journal of Theoretical Biology, 382 (7). pp. 160-177. doi:10.1016/j.jtbi.2015.04.039

Pellis, Lorenzo, Spencer, Simon E. F. and House, Thomas A. (2015) Real-time growth rate for general stochastic SIR epidemics on unclustered networks. Mathematical Biosciences, 265 . pp. 65-81. doi:10.1016/j.mbs.2015.04.006

Isaac Newton Institute IDD Collaboration (Including:

Roberts, Mick G., Andreasen, Viggo, Lloyd, Alun and Pellis, Lorenzo (2015) Nine challenges for deterministic epidemic models. Epidemics, 10 . pp. 49-53. doi:10.1016/j.epidem.2014.09.006

Ball, Frank, Britton, Tom, House, Thomas A., Isham, Valerie, Mollison, Denis, Pellis, Lorenzo and Tomba, Gianpaolo Scalia (2015) Seven challenges for metapopulation models of epidemics, including households models. Epidemics, Volume 10 . pp. 63-67. doi:10.1016/j.epidem.2014.08.001

Gog, Julia R., Pellis, Lorenzo, Wood, James L. N., McLean, Angela R., Arinaminpathy, Nimalan and Lloyd-Smith, James O. (2015) Seven challenges in modelling pathogen dynamics within-host and across scales. Epidemics, Volume 10 . pp. 45-48. doi:10.1016/j.epidem.2014.09.009

Pellis, Lorenzo, Ball, Frank, Bansal, Shweta, Eames, Ken T. D., House, Thomas A., Isham, Valerie and Trapman, Pieter (2015) Eight challenges for network epidemic models. Epidemics, 10 . pp. 58-62. doi:10.1016/j.epidem.2014.07.003

2013

Lythgoe, Katrina A., Pellis, Lorenzo and Fraser, Christophe (2013) Is HIV short-sighted? Insights from a multistrain nested model. Evolution, Volume 67 (Number 10). pp. 2769-2782. doi:10.1111/evo.12166