2022

Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif, Batis, Nikolaos, Brooks, Jill, Nankivell, Paul, Sharma, Neil, Robinson, Max, Mehanna, Hisham, Khurram, Syed Ali and Rajpoot, Nasir M. (Nasir Mahmood) (2022) A digital score of tumour‐associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. The Journal of Pathology, 256 (2). pp. 174-185. doi:10.1002/path.5819

2021

Bilal, Mohsin, Raza, Shan-e-Ahmed, Azam, Ayesha, Graham, Simon, Ilyas, Mohammad, Cree, Ian A., Snead, David, Minhas, Fayyaz ul Amir Afsar and Rajpoot, Nasir M. (2021) Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images : a retrospective study. The Lancet Digital Health, 3 (12). e763-e772. doi:10.1016/S2589-7500(21)00180-1

Winfield, Jessica M., Wakefield, Jennifer C., Brenton, James D., AbdulJabbar, Khalid, Savio, Antonella, Freeman, Susan, Pace, Erika, Lutchman-Singh, Kerryn , Vroobel, Katherine M., Yuan, Yinyin, Banerjee, Susana, Porta, Nuria, Raza, Shan-e-Ahmed and deSouza, Nandita M. (2021) Biomarkers for site-specific response to neoadjuvant chemotherapy in epithelial ovarian cancer : relating MRI changes to tumour cell load and necrosis. British Journal of Cancer, 124 . pp. 1130-1137. doi:10.1038/s41416-020-01217-5

Narayanan, Priya Lakshami, Raza, Shan-e-Ahmed, Hall, Allison H., Marks, Jeffrey R. , King, Lorraine , West, Robert B. , Hernandez, Lucia , Guppy, Naomi , Dowsett, Mitch , Gusterson, Barry , Maley, Carlo , Hwang, E. Shelley and Yuan, Yinyin (2021) Unmasking the immune microecology of ductal carcinoma in situ with deep learning. npj Breast Cancer , 7 . 19. doi:10.1038/s41523-020-00205-5

2020

(2020) Immune surveillance in clinical regression of pre-invasive squamous cell lung cancer. Cancer Discovery . doi:10.1158/2159-8290.CD-19-1366

TRACERx Consortium (Including:

). (2020) Geospatial immune variability illuminates differential evolution of lung adenocarcinoma. Nature Medicine, 26 . pp. 1054-1062. doi:10.1038/s41591-020-0900-x

2019

Graham, Simon, Vu, Quoc Dang, Raza, Shan E. Ahmed, Azam, Ayesha, Tsang, Yee Wah, Kwak, Jin Tae and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Hover-Net : simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Analysis, 58 . 101563. doi:10.1016/j.media.2019.101563

Zormpas-Petridis, Konstantinos , Failmezger, Henrik , Raza, Shan E. Ahmed, Roxanis, Ioannis , Jamin, Yann and Yuan, Yinyin (2019) Superpixel-based conditional random fields (SuperCRF) : incorporating global and local context for enhanced deep learning in melanoma histopathology. Frontiers in Oncology, 9 . 1045. doi:10.3389/fonc.2019.01045

Raza, Shan-e-Ahmed, Cheung, Linda, Shaban, Muhammad, Graham, Simon, Epstein, D. B. A., Pelengaris, Stella, Khan, Michael and Rajpoot, Nasir M. (2019) Micro-Net : a unified model for segmentation of various objects in microscopy images. Medical Image Analysis, 52 . pp. 160-173. doi:10.1016/j.media.2018.12.003

2017

Li, Guannan, Raza, Shan-e-Ahmed and Rajpoot, Nasir M. (2017) Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images. Medical Image Analysis, 37 . pp. 91-100. doi:10.1016/j.media.2017.01.006

Alsubaie, Najah, Trahearn, Nicholas, Raza, Shan-e-Ahmed, Snead, David and Rajpoot, Nasir M. (2017) Stain deconvolution using statistical analysis of multi-resolution stain colour representation. PLoS One, 12 (1). e0169875. doi:10.1371/journal.pone.0169875

2016

Sirinukunwattana, Korsuk, Raza, Shan-e-Ahmed, Tsang, Yee-Wah, Snead, David, Cree, Ian A. and Rajpoot, Nasir M. (2016) Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Transactions on Medical Imaging, 35 (5). 1196 -1206. doi:10.1109/TMI.2016.2525803

Raza, Shan-e-Ahmed, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, D. B. A., Nattkemper, Tim W. and Rajpoot, Nasir M. (2016) Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9 (11). pp. 1-13. doi:10.1186/s13040-016-0088-2

2015

Raza, Shan-e-Ahmed, Sanchez Silva, Victor, Prince, Gillian, Clarkson, John P. and Rajpoot, Nasir M. (2015) Registration of thermal and visible light images of diseased plants using silhouette extraction in the wavelet domain. Pattern Recognition, Volume 48 (Number 7). pp. 2119-2128. doi:10.1016/j.patcog.2015.01.027

Raza, Shan-e-Ahmed, Prince, Gillian, Clarkson, John P. and Rajpoot, Nasir M. (2015) Automatic detection of diseased tomato plants using thermal and stereo visible light images. PLoS One, Volume 10 (Number 4). Article number e0123262. doi:10.1371/journal.pone.0123262

2014

Khan, Adnan M., Raza, Shan-e-Ahmed, Khan, Michael and Rajpoot, Nasir M. (2014) Cell phenotyping in multi-tag fluorescent bioimages. Neurocomputing , Volume 134 . pp. 254-261. doi:10.1016/j.neucom.2013.08.043

Raza, Shan-e-Ahmed, Smith, Hazel K., Clarkson, Graham J. J., Taylor, Gail, Thompson, Andrew J., Clarkson, John P. and Rajpoot, Nasir M. (Nasir Mahmood) (2014) Automatic detection of regions in spinach canopies responding to soil moisture deficit using combined visible and thermal imagery. PLoS One, Volume 9 (Number 6). Article number e97612. doi:10.1371/journal.pone.0097612

Raza, Shan-e-Ahmed (2014) Multi-variate image analysis for detection of biomedical anomalies. PhD thesis, University of Warwick.

2012

Raza, Shan-e-Ahmed, Humayun, Ahmad, Abouna, Sylvie, Nattkemper, Tim W., Epstein, D. B. A., Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2012) RAMTaB : robust alignment of multi-tag bioimages. PLoS One, Vol.7 (No.2). e30894. doi:10.1371/journal.pone.0030894

2011

Humayun, A., Raza, Shan-e-Ahmed, Waddington, C., Abouna, Sylvie, Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2011) A novel framework for molecular co-expression pattern analysis in multi-channel toponome fluorescence images. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology (Submitted)