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Number of items: 94.
Jones, Jana, Higham, Thomas F.G., Chivall, David, Bianucci, Raffaella, Kay, Gemma L., Pallen, Mark J., Oldfield, Ron, Ugliano, Federica and Buckley, Stephen A. (2018) A prehistoric Egyptian mummy: Evidence for an βembalming recipeβ and the evolution of early formative funerary treatments. Journal of Archaeological Science, 100 . pp. 191-200. doi:10.1016/j.jas.2018.07.011 ISSN 0305-4403.
Mokrousov, Igor, Senghore, Madikay, Otu, Jacob, Witney, Adam, Gehre, Florian, Doughty, Emma L., Kay, Gemma L., Butcher, Phillip, Salako, Kayode, Kehinde, Aderemi, Onyejepu, Nneka, Idigbe, Emmanuel, Corrah, Tumani, de Jong, Bouke, Pallen, Mark J. and Antonio, Martin (2017) Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria. PLoS One, 12 (9). e0184510. doi:10.1371/journal.pone.0184510 ISSN 1932-6203.
Card, Roderick M., Cawthraw, Shaun A., Nunez-Garcia, Javier, Ellis, Richard J., Kay, Gemma, Pallen, Mark J., Woodward, Martin J. and Anjum, Muna F. (2017) An in vitro chicken gut model demonstrates transfer of a multidrug resistance plasmid from salmonella to commensal escherichia coli. mBio, 8 (4). e00777-17. doi:10.1128/mBio.00777-17 ISSN 2150-7511.
Guy, Collette S., Tichauer, Esther, Kay, Gemma L., Phillips, Daniel J., Bailey, Trisha L., Harrison, James, Furze, Christopher M., Millard, Andrew D., Gibson, Matthew I., Pallen, Mark J. and Fullam, Elizabeth (2017) Identification of the anti-mycobacterial functional properties of piperidinol derivatives. British Journal of Pharmacology, 174 (14). pp. 2183-2193. doi:10.1111/bph.13744 ISSN 1476-5381.
Unnikrishnan, Meera, Constantinidou, Chrystala, Palmer, Tracy and Pallen, Mark J. (2017) The enigmatic Esx proteins : looking beyond mycobacteria. Trends in Microbiology, 25 (3). pp. 192-204. doi:10.1016/j.tim.2016.11.004 ISSN 0966-842X.
Sagar, Nidhi M., Kay, Gemma L., OβConnell, N., Nwokolo, Chuka U., Bardhan, Karna Dev, Quince, Christopher, Pallen, Mark J. and Arasaradnam, Ramesh P. (2016) PWE-061 Dysbiosis in patients with bile acid diarrhoea (BAD) demonstrated using 16S RNA gene sequencing. In: British Society of Gastroenterology, Annual General Meeting, 20β23 Jun 2016. Published in: Gut, 65 (Supplement 1). A168-A168. doi:10.1136/gutjnl-2016-312388.307 ISSN 0017-5749.
Higgins, P. G., Chan, J. Z.-M., Seifert, H., Pallen, Mark J. and Millard, Andrew D. (2016) Draft genome sequences of 11 clinical isolates of Acinetobacter baumannii. Genome Announcements, 4 (2). e00269. doi:10.1128/genomeA.00269-16 ISSN 2169-8287.
Millard, Andrew D., Westblade, Lars, LiPuma, John J., Vavikolanu, Kranthi, Read, Timothy, Pallen, Mark J., Burd, Eileen and Constantinidou, Chrystala (2015) Genome Sequence of the Pandoraea apista LMG 16407 Type Strain. Journal of Bacteriology, 3 (6). e01300-e01315. doi:10.1128/genomeA.01300-15 ISSN 0021-9193.
Loman, Nicholas J. and Pallen, Mark J. (2015) Twenty years of bacterial genome sequencing. Nature Reviews Microbiology . doi:10.1038/nrmicro3565 ISSN 1740-1526.
HΓ€nsch, Stephanie, Cilli, Elisabetta, Catalano, Giulioilda, Gruppioni, Giorgio, Bianucci, Raffaella, Stenseth, Nils C., Bramanti, Barbara and Pallen, Mark J. (2015) The pla gene, encoding plasminogen activator, is not specific to Yersinia pestis. BMC Research Notes, 8 (1). pp. 1-3. doi:10.1186/s13104-015-1525-x ISSN 1756-0500.
Webber, Mark A., Whitehead, Rebekah N., Mount, Manuella, Loman, Nicholas J., Pallen, Mark J. and Piddock, Laura J. V. (2015) Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure. Journal of antimicrobial chemotherapy, Volume 70 (Number 8). pp. 2241-2248. doi:10.1093/jac/dkv109 ISSN 0305-7453.
Jones, J., Bianucci, Raffaella, Higham, T. F .G., Kay, G. L., Pallen, Mark J., Oldfield, R. and Buckley, S. A. (2015) The prehistoric βmummyβ from Turinβs Egyptian Museum : preliminary scientific investigations. In: International Congress of Egyptologists XI, Florence, Italy, 23-30 Aug 2015
Smith, Oliver, Momber, G., Bates, R., Garwood, P., Fitch, S., Pallen, Mark J., Gaffney, V. and Allaby, Robin G. (2015) Response to comment on "Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago". Science, 349 (6245). p. 247. doi:10.1126/science.aab2062 ISSN 0036-8075.
Kay, Gemma L., Millard, Andrew D., Sergeant, Martin J., Midzi, Nicholas, Gwisai, Reggis, Mduluza, Takafira, Ivens, Alasdair, Nausch, Norman, Mutapi, Francisca and Pallen, Mark J. (2015) Differences in the faecal microbiome in Schistosoma haematobium infected children vs. uninfected children. PLoS Neglected Tropical Diseases, 9 (6). e0003861. doi:10.1371/journal.pntd.0003861 ISSN 1935-2727.
Kay, Gemma L., Sergeant, Martin J., Zhou, Zhemin, Chan, Jacqueline, Millard, Andrew D., Quick, Joshua, Szikossy, IldikΓ³, Pap, IldikoΜ, Spigelman, Mark, Loman, Nicholas J., Achtman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2015) Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nature Communications, Volume 6 . pp. 1-9. Article number 6717. doi:10.1038/ncomms7717 ISSN 2041-1723.
Bruce, A. G., Thouless, M. E. , Haines, A. S., Pallen, Mark J., Grundhoff, A. and Rose, T. N. (2015) Complete genome sequence of MneRV2, the pig-tailed macaque RV2 rhadinovirus, and evolutionary relationship with rhesus macaque RRV and human herpesvirus 8/KSHV. Journal of Virology, Volume 89 (Number 7). pp. 3888-3909. doi:10.1128/JVI.03597-14 ISSN 0022-538X.
Smith, Oliver , Momber, G., Bates, R., Garwood, P., Fitch, S., Pallen, Mark J., Gaffney, V. and Allaby, Robin G. (2015) Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago. Science, Volume 347 (Number 6225). pp. 998-1001. doi:10.1126/science.1261278 ISSN 0036-8075.
Pallen, Mark J. (2014) Diagnostic metagenomics : potential applications to bacterial, viral and parasitic infections. Parasitology , Volume 141 (Number 14). pp. 1856-1862. doi:10.1017/S0031182014000134 ISSN 0031-1820.
Halachev, Mihail R., Chan, Jacqueline, Constantinidou, Chrystala, Cumley, Nicola, Bradley, Craig, Smith-Banks, Matthew, Oppenheim, Beryl and Pallen, Mark J. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine, Volume 6 (Number 11). pp. 1-13. Article number 70. doi:10.1186/s13073-014-0070-x ISSN 1756-994X.
Quick, Joshua, Cumley, Nicola, Wearn, Christopher M., Niebel, Marc, Constantinidou, Chrystala, Thomas, Christopher M., Pallen, Mark J., Moiemen, Naiem S., Bamford, Amy, Oppenheim, Beryl and Loman, Nicholas J. (2014) Seeking the source of Pseudomonas aeruginosa infections in a recently opened hospital : an observational study using whole-genome sequencing. BMJ Open, Volume 4 (Number 11). Article number e006278. doi:10.1136/bmjopen-2014-006278 ISSN 2044-6055.
Doughty, Emma L., Sergeant, Martin J., Ifedayo, Adetifa M. O., Antonio, Martin and Pallen, Mark J. (2014) Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer. PeerJ PrePrints . Article number e585 . doi:10.7717/peerj.585 ISSN 2167-9843.
Kay, Gemma L., Sergeant, Martin J., Giuffra, Valentina, Bandiera, Pasquale, Milanese, Marco, Bramanti, Barbara, Bianucci, Raffaella and Pallen, Mark J. (2014) Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. mBio, Volume 5 (Number 4). Article number e01337-14. doi:10.1128/mBio.01337-14 ISSN 2150-7511.
Loman, Nicholas J., Manzoor, Susan, Quick, Joshua, Fothergill, J. L., Gossain, Savita, Kenna, D., Turton, J., Walshaw, M., Whitehouse, Joanna L., Pallen, Mark J., Winstanley, Craig, Hawkey, P. M. (Peter M.) and Nash, E. F. (2014) 148 Use of whole-genome sequencing to identify transmission of Pseudomonas aeruginosa between cystic fibrosis patients. In: 37th European Cystic Fibrosis Conference, 11-14 Jun 2014. Published in: Journal of Cystic Fibrosis, Volume 13 doi:10.1016/S1569-1993(14)60284-8 ISSN 1569-1993.
Quick, Joshua , Constantinidou, Chrystala, Pallen, Mark J., Oppenheim, Beryl and Loman, Nicholas J. (2014) Draft genome sequence of Elizabethkingia meningoseptica isolated from a traumatic wound. Genome Announcements, Volume 2 (Number 3). Article number e00355-14. doi:10.1128/genomeA.00355-14 ISSN 2169-8287.
Sergeant, Martin J., Constantinidou, Chrystala, Cogan, Tristan A., Bedford, Michael R., Penn, Charles W. and Pallen, Mark J. (2014) Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS ONE , Volume 9 (Number 3). Article number e91941. doi:10.1371/journal.pone.0091941 ISSN 1932-6203.
Bingle, Lewis E. H., Constantinidou, Chrystala, Shaw, Robert K., Islam, Md. Shahidul, Patel, Mala, Snyder, Lori A. S., Lee, David J., Penn, C. W., Busby, Stephen J. W. and Pallen, Mark J. (2014) Microarray analysis of the ler regulon in enteropathogenic and enterohaemorrhagic escherichia coli strains. PLoS One, Volume 9 (Number 1). e80160. doi:10.1371/journal.pone.0080160 ISSN 1932-6203.
Quraishi, M. N., Sergeant, Martin J., Kay, Gemma L., Iqbal, Tariq, Constantinidou, Chrystala, Chan, Jacqueline, Trivedi, Palak J., Ferguson, James W., Adams, David H., Pallen, Mark J. and Hirschfield, Gideon (2014) Probing the microbiota in PSC : the gut adherent microbiota of PSC-IBD is distinct to that of IBD and controls. In: The 65th Annual Meeting of the American Association for the Study of Liver Diseases: The Liver Meeting 2014, Nov 2014. Published in: Hepatology, 60 (S1). 264A-267A. doi:10.1002/hep.27470 ISSN 0270-9139.
Tacke, D., Gillis, M., Higgins, P. G., Millard, Andrew D., Chan, J. Z. M., Pallen, Mark J., Faetkenheuer, G., Cornely, O. A., Seifert, H. and Vehreschild, M. J. G. T. (2014) Use of whole-genome sequencing to investigate the epidemiology of vancomycin-resistant enterococci on an intensive care unit. In: 24th European Society of Clinical Microbiology and Infectious Diseases (ECCMID) Conference 2014, Barcelona, Spain, 10-14 May 2014
Snyder, L. A., Loman, Nicholas J., Faraj, L. A., Levi, K., Weinstock, G., Boswell, T. C., Pallen, Mark J. and Ala Aldeen, D. A. (2013) Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, Volume 18 (Number 42). 20611. ISSN 1560-7917.
Solez, Kim, Bernier, Ashlyn, Crichton, Joel, Graves, Heather, Kuttikat, Preeti, Lockwood, Ross, Marovitz, William F, Monroe, Damon, Pallen, Mark J., Pandya, Shawna et al.
(2013)
Bridging the gap between the technological singularity and mainstream medicine : highlighting a course on technology and the future of medicine.
Global Journal of Health Science, 5
(6).
pp. 112-125.
doi:10.5539/gjhs.v5n6p112
ISSN 1916-9736.
Chan, Jacqueline, Sergeant, Martin J., Lee, Oona Y.-C., Minnikin, David E., Besra, Gurdyal S., Pap, IlidkΓ³, Spigelman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2013) Metagenomic analysis of tuberculosis in a mummy. New England Journal Of Medicine , Volume 369 (Number3). pp. 289-290. ISSN 0028-4793 doi:10.1056/NEJMc1302295
Gladstone, Rebecca A., Loman, Nicholas J., Constantinidou, Chrystala, Tocheva, Anna S., Jefferies, Johanna M. C., Faust, Saul N., OβConnor, Leigh, Chan, Jacqueline, Pallen, Mark J. and Clarke, Stuart C. (2013) Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine. PLoS One, Volume 8 (Number 5). e64731. doi:10.1371/journal.pone.0064731 ISSN 1932-6203.
Robinson, Esther R., Walker, Timothy M. and Pallen, Mark J. (2013) Genomics and outbreak investigation : from sequence to consequence. Genome Medicine, 5 (4). 36. doi:10.1186/gm440 ISSN 1756-994X.
RemuiΓ±Γ‘n, Modesto J., PΓ©rez-HerrΓ‘n, Esther, RullΓ‘s, JoaquΓn, Alemparte, Carlos, MartΓnez-Hoyos, MarΓa, Dow, David J., Afari, Johnson, Mehta, Nalini, Esquivias, Jorge, JimΓ©nez, Elena et al.
(2013)
Tetrahydropyrazolo[1,5-a]Pyrimidine-3-Carboxamide and N-Benzyl-6β²,7β²-Dihydrospiro[Piperidine-4,4β²-Thieno[3,2-c]Pyran] analogues with bactericidal efficacy against Mycobacterium tuberculosis targeting MmpL3.
PLoS One, Volume 8
(Number 4).
Article number e60933.
doi:10.1371/journal.pone.0060933
ISSN 1932-6203.
Loman, Nicholas J., Constantinidou, Chrystala, Christner, Martin, Rohde, Holger, Chan, Jacqueline, Quick, Joshua, Weir, Jacqueline C., Quince, Christopher, Smith, Geoffrey, Betley, Jason R., Aepfelbacher, Martin and Pallen, Mark J. (2013) A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-Toxigenic Escherichia coli O104:H4. JAMA: The Journal of the American Medical Association, Volume 309 (Number 14). pp. 1502-1510. doi:10.1001/jama.2013.3231 ISSN 0098-7484.
Pallen, Mark J. (2013) Reply to Updating benchtop sequencing performance comparison. Nature Biotechnology, Volume 31 (Number 4). p. 296. ISSN 1087-0156 doi:10.1038/nbt.2531
Pallen, Mark J. and Pearn, Alison (2013) Darwin and religion. In: Ruse, Alison, (ed.) The Cambridge Encyclopedia of Darwin and Evolutionary Thought. Cambridge: Cambridge University Press. ISBN 9780521195317
Loman, Nicholas J., Constantinidou, Chrystala, Chan, Jacqueline, Halachev, Mihail R., Sergeant, Martin J., Penn, Charles W., Robinson, Esther R. and Pallen, Mark J. (2012) High-throughput bacterial genome sequencing : an embarrassment of choice, a world of opportunity. Nature Reviews Microbiology, 10 (9). pp. 599-606. doi:10.1038/nrmicro2850 ISSN 1740-1526.
Constantinidou, Chrystala, Sergeant, Martin J., Cogan, Tristan, Penn, Charles W. and Pallen, Mark J. (2012) High-throughput sequencing of 16S rRNA gene amplicons : effects of extraction procedure, primer length and annealing temperature. PLoS One, Volume 7 (Number 5). Article number e38094. doi:10.1371/journal.pone.0038094 ISSN 1932-6203.
Loman, Nicholas J., Misra, Raju V., Dallman, Timothy J., Constantinidou, Chrystala, Gharbia, Saheer E., Wain, John and Pallen, Mark J. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, Volume 30 (Number 5). pp. 434-439. doi:10.1038/nbt.2198 ISSN 1087-0156.
Islam, Md. Shahidul, Shaw, Robert K., Frankel, Gad, Pallen, Mark J. and Busby, Stephen J. W. (2012) Translation of a minigene in the 5β² leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene. Biochemical Journal, 441 (1). pp. 247-253. doi:10.1042/BJ20110912 ISSN 0264-6021.
Van Wyhe, John and Pallen, Mark J. (2012) The βAnnie Hypothesis' : did the death of His daughter cause Darwin to βGive up Christianityβ? Centaurus, Volume 54 (Number 2). pp. 105-123. doi:10.1111/j.1600-0498.2012.00256.x ISSN 0008-8994.
Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, 12 (1). 302. doi:10.1186/1471-2180-12-302 ISSN 1471-2180.
Kochar, M., Crosatti, M., Harrison, E. M., Rieck, B., Chan, J., Constantinidou, Chrystala, Pallen, Mark J., Ou, H.-Y. and Rajakumar, Kumar (2012) Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant acinetobacter baumannii strain. Antimicrobial Agents and Chemotherapy, volume 56 (Number 4). pp. 1845-1853. doi:10.1128/AAC.05334-11 ISSN 0066-4804.
Williams, Tiffany M., Loman, Nicholas J., Ebruke, Chinelo, Musher, Daniel M., Adegbola, Richard A., Pallen, Mark J., Weinstock, George M. and Antonio, Martin (2012) Genome analysis of a highly virulent serotype 1 strain of streptococcus pneumoniae from West Africa. PLoS One, Volume 7 (Number 10). Article number e26742. doi:10.1371/journal.pone.0026742 ISSN 1932-6203.
Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.
Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.
Abrahams, Katherine A., Cox, Jonathan A. G., Spivey, Vickey L., Loman, Nicholas J., Pallen, Mark J., Constantinidou, Chrystala, FernΓ‘ndez, Raquel, Alemparte, Carlos, RemuiΓ±Γ‘n, Modesto J., Barros, David, Ballell, Lluis and Besra, Gurdyal S. (2012) Identification of novel Imidazo[1,2-a]pyridine inhibitors targeting M. tuberculosis QcrB. PLoS One, Volume 7 (Number 12). Article number e52951. doi:10.1371/journal.pone.0052951 ISSN 1932-6203.
Loman, Nicholas J., Misra, Raju V., Dallman, Timothy J, Constantinidou, Chrystala, Gharbia, Saheer E, Wain, John and Pallen, Mark J. (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nature Biotechnology, 30 (6). p. 562. doi:10.1038/nbt0612-562f ISSN 1087-0156.
Chan, Jacqueline, Halachev, Mihail R., Yates, Emma, Smith, Grace and Pallen, Mark J. (2012) Whole-genome sequence of the emerging pathogen mycobacterium abscessus strain 47J26. Journal of Bacteriology, Volume 194 (Number 2). p. 549. doi:10.1128/JB.06440-11 ISSN 0021-9193.
Clarke, D. J., Chaudhuri, R. R., Martin, H. M., Campbell, B. J., Rhodes, J. M., Constantinidou, Chrystala, Pallen, Mark J., Loman, Nicholas J., Cunningham, A. F., Browning, D. F. and Henderson, I. R. (2011) Complete genome sequence of the Crohn's disease-associated adherent-invasive escherichia coliStrain HM605. Journal of Bacteriology, Volume 193 (Number 17). Article number 4540. doi:10.1128/JB.05374-11 ISSN 0021-9193.
Rohde, Holger, Qin, Junjie, Cui, Yujun, Li, Dongfang, Loman, Nicholas J., Hentschke, Moritz, Chen, Wentong, Pu, Fei, Peng, Yangqing, Li, Junhua et al.
(2011)
Open-source genomic analysis of shiga-toxinβproducing E. coli O104:H4.
New England Journal Of Medicine , 365
(8).
pp. 718-724.
doi:10.1056/NEJMoa1107643
ISSN 0028-4793.
Pallen, Mark J. and Loman, Nicholas J. (2011) Are diagnostic and public health bacteriology ready to become branches of genomic medicine? Genome Medicine, Volume 3 (Number 8). Article number 53. doi:10.1186/gm269 ISSN 1756-994X.
Hornsey, M., Loman, Nicholas J., Wareham, D. W., Ellington, M. J., Pallen, Mark J., Turton, J. F., Underwood, A., Gaulton, T., Thomas, C. P., Doumith, M., Livermore, D. M. and Woodford, N. (2011) Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy. Journal of Antimicrobial Chemotherapy, Volume 66 (Number 7). pp. 1499-1503. doi:10.1093/jac/dkr168 ISSN 0305-7453.
US7968100 B2; CA2450939A1 (2011) Surface proteins from coagulase-negative staphylococci and Staphylococcus aureus that generate cross-reactive monoclonal and polyclonal antibodies. [Online]. Available at: http://www.google.com/patents/US7968100.
Islam, Md. Shahidul, Pallen, Mark J. and Busby, Stephen J. W. (2011) A cryptic promoter in theLEE1regulatory region of enterohaemorrhagicEscherichia coli: promoter specificity in AT-rich gene regulatory regions. Biochemical Journal, 436 (3). pp. 681-686. doi:10.1042/BJ20110260 ISSN 0264-6021.
Shaw, Robert K., Lasa, IΓ±igo, GarcΓa, BegoΓ±a M., Pallen, Mark J., Hinton, Jay C. D., Berger, Cedric N. and Frankel, Gad (2011) Cellulose mediates attachment of Salmonella enterica Serovar Typhimurium to tomatoes. Environmental Microbiology Reports, Volume 3 (Number 5). pp. 569-573. doi:10.1111/j.1758-2229.2011.00263.x ISSN 1758-2229.
2320233; CA 2450939 A1 (2011) Cross-reactive monoclonal and polyclonal antibodies which recognize surface proteins from coagulase-negative staphylococci and staphylococcus aureus. [Online]. Available at: http://www.google.com.na/patents/CA2450939A1?cl=en.
Zarrilli, R., Giannouli, M., Rocco, F., Loman, Nicholas J., Haines, A. S., Constantinidou, Chrystala, Pallen, Mark J., Triassi, M. and Di Nocera, P. P. (2011) Genome sequences of three acinetobacter baumannii strains assigned to the multilocus sequence typing genotypes ST2, ST25, and ST78. Journal of Bacteriology, Volume 193 (Number 9). pp. 2359-2360. doi:10.1128/JB.00245-11 ISSN 0021-9193.
Pallen, Mark J. (2011) Time to recognise that mitochondria are bacteria? Trends in Microbiology, Volume 19 (Number 2). pp. 58-64. doi:10.1016/j.tim.2010.11.001 ISSN 0966-842X.
Halachev, Mihail R., Loman, Nicholas J. and Pallen, Mark J. (2011) Calculating orthologs in bacteria and archaea : a divide and conquer approach. PLoS One, Volume 6 (Number 12). Article number e28388. doi:10.1371/journal.pone.0028388 ISSN 1932-6203.
Ricci, V., Loman, Nicholas J., Pallen, Mark J., Ivens, Alasdair, Fookes, M., Langridge, G. C., Wain, J. and Piddock, Laura J. V. (2011) The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella. Journal of Antimicrobial Chemotherapy, Volume 67 (Number 3). pp. 589-599. doi:10.1093/jac/dkr515 ISSN 0305-7453.
Islam, Md. Shahidul, Pallen, Mark J. and Busby, Stephen J. W. (2011) A cryptic promoter in theLEE1regulatory region of enterohaemorrhagicEscherichia coli: promoter specificity in AT-rich gene regulatory regions. Biochemical Journal, Volume 436 (Number 3). pp. 681-686. doi:10.1042/BJ20110260 ISSN 0264-6021.
Pallen, Mark J. (2011) The human microbiome and hostβpathogen interactions. In: Nelson, Karen, (ed.) Metagenomics of the Human Body. New York: Springer-Verlag New York, pp. 43-61. ISBN 9781441970886
Crossman, L. C., Chaudhuri, R. R., Beatson, S. A., Wells, T. J., Desvaux, M., Cunningham, A. F., Petty, N. K., Mahon, V., Brinkley, C., Hobman, J. L. et al.
(2010)
A commensal gone bad : complete genome sequence of the prototypical enterotoxigenic escherichia coli strain H10407.
Journal of Bacteriology, Volume 192
(Number 21).
pp. 5822-5831.
doi:10.1128/JB.00710-10
ISSN 0021-9193.
Shukla, Anshuman, Pallen, Mark J., Anthony, Mark and White, Scott A. (2010) The homodimeric GBS1074 fromStreptococcus agalactiae. Acta Crystallographica Section F Structural Biology and Crystallization Communications, Volume 66 (Number 11). pp. 1421-1425. doi:10.1107/S1744309110036286 ISSN 1744-3091.
Shaw, Robert K., Berger, Cedric N., Pallen, Mark J., SjΓΆling, Γ sa and Frankel, Gad (2010) Flagella mediate attachment of enterotoxigenic Escherichia coli to fresh salad leaves. Environmental Microbiology Reports, Volume 3 (Number 1). pp. 112-117. doi:10.1111/j.1758-2229.2010.00195.x ISSN 1758-2229.
Chaudhuri, R. R., Sebaihia, Mohammed, Hobman, Jon L., Webber, Mark A., Leyton, Denisse L., Goldberg, Martin D., Cunningham, Adam F., Scott-Tucker, Anthony, Ferguson, Paul R., Thomas, Christopher M. et al.
(2010)
Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative escherichia coli strain 042.
PLoS One, 5
(1).
e8801.
doi:10.1371/journal.pone.0008801
ISSN 1932-6203.
Loman, Nicholas J. and Pallen, Mark J. (2010) EntrezAJAX : direct web browser access to the Entrez Programming Utilities. Source Code for Biology and Medicine, volume 5 (Number 1). Article number 6. doi:10.1186/1751-0473-5-6 ISSN 1751-0473.
Pallen, Mark J. (2010) FP1.1 High-throughput sequencing as a tool in the discovery, diagnosis and epidemiology of nosocomial pathogens. Journal of Hospital Infection, 76 . S1. doi:10.1016/S0195-6701(10)00376-2 ISSN 0195-6701.
Pallen, Mark J., Loman, Nicholas J. and Penn, Charles W. (2010) High-throughput sequencing and clinical microbiology : progress, opportunities and challenges. Current Opinion in Microbiology, Volume 13 (Number 5). pp. 625-631. doi:10.1016/j.mib.2010.08.003 ISSN 1369-5274.
Lewis, T., Loman, Nicholas J., Bingle, L., Jumaa, P., Weinstock, G. M., Mortiboy, D. and Pallen, Mark J. (2010) High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak. Journal of Hospital Infection, Volume 75 (Number 1). pp. 37-41. doi:10.1016/j.jhin.2010.01.012 ISSN 0195-6701.
Islam, Md. Shahidul, Bingle, Lewis E. H., Pallen, Mark J. and Busby, Stephen J. W. (2010) Organization of the LEE1 operon regulatory region of enterohaemorrhagic Escherichia coli O157:H7 and activation by GrlA. Molecular Microbiology, 79 (2). pp. 468-483. doi:10.1111/j.1365-2958.2010.07460.x ISSN 0950-382X.
Younis, R., Bingle, L. E. H., Rollauer, S., Munera, D., Busby, S. J., Johnson, S., Deane, J. E., Lea, S. M., Frankel, G. and Pallen, Mark J. (2010) SepL resembles an aberrant effector in binding to a class 1 Type III secretion chaperone and carrying an N-Terminal secretion signal. Journal of Bacteriology, Volume 192 (Number 22). pp. 6093-6098. doi:10.1128/JB.00760-10 ISSN 0021-9193.
Snyder, Lori A. S., Loman, Nicholas J., Linton, James D., Langdon, Rebecca R., Weinstock, George M., Wren, Brendan and Pallen, Mark J. (2010) Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching. BMC Genomics, Volume 11 (Number 1). Article number 67. doi:10.1186/1471-2164-11-67 ISSN 1471-2164.
Woo, Patrick C. Y., Lau, Susanna K. P., Tse, Herman, Teng, Jade L. L., Curreem, Shirly O. T., Tsang, Alan K. L., Fan, Rachel Y. Y., Wong, Gilman K. M., Huang, Yi, Loman, Nicholas J., Snyder, Lori A. S., Cai, James J., Huang, Jian-Dong, Mak, William, Pallen, Mark J., Lok, Si and Yuen, Kwok-Yung (2009) The complete genome and proteome of laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats. PLoS Genetics, 5 (3). e1000416. doi:10.1371/journal.pgen.1000416 ISSN 1553-7390.
Snyder, Lori A. S., Loman, Nicholas J., Pallen, Mark J. and Penn, C. W. (2009) Next-generation sequencingβthe promise and perils of charting the great microbial unknown. Microbial Ecology, 57 (1). pp. 1-3. doi:10.1007/s00248-008-9465-9 ISSN 0095-3628.
Snyder, Lori A.S., Loman, Nicholas J., FΓΌtterer, Klaus and Pallen, Mark J. (2009) Bacterial flagellar diversity and evolution : seek simplicity and distrust it? Trends in Microbiology, 17 (1). pp. 1-5. doi:10.1016/j.tim.2008.10.002 ISSN 0966-842X.
Snyder, Lori A. S., Cole, Jeff A and Pallen, Mark J. (2009) Comparative analysis of two Neisseria gonorrhoeae genome sequences reveals evidence of mobilization of Correia Repeat Enclosed Elements and their role in regulation. BMC Genomics, 10 (1). p. 70. doi:10.1186/1471-2164-10-70 ISSN 1471-2164.
Pallen, Mark J. (2009) Darwin : from the origin of species to the origin of infection. Microbiology Today, 36 . p. 76. ISSN 1464-0570.
Lee, David J., Bingle, Lewis E. H., Heurlier, Karin, Pallen, Mark J., Penn, Charles W., Busby, Stephen J. W. and Hobman, Jon L. (2009) Gene doctoring : a method for recombineering in laboratory and pathogenic Escherichia coli strains. BMC Microbiology, 9 (1). p. 252. doi:10.1186/1471-2180-9-252 ISSN 1471-2180.
Loman, Nicholas J., Snyder, Lori A. S., Linton, James D., Langdon, Rebecca R., Lawson, A. J., Weinstock, G. M., Wren, B. W. and Pallen, Mark J. (2009) Genome sequence of the emerging pathogen helicobacter canadensis. Journal of Bacteriology, 191 (17). pp. 5566-5567. doi:10.1128/JB.00729-09 ISSN 0021-9193.
Berger, Cedric N., Shaw, Robert K., Ruiz-Perez, Fernando, Nataro, James P., Henderson, Ian R., Pallen, Mark J. and Frankel, Gad (2009) Interaction of enteroaggregative escherichia coli with salad leaves. Environmental Microbiology Reports, 1 (4). pp. 234-239. doi:10.1111/j.1758-2229.2009.00037.x ISSN 1758-2229.
Berger, Cedric N., Shaw, Robert K., Brown, Derek, Mather, H., Clare, Simon, Dougan, G., Pallen, Mark J. and Frankel, Gad (2009) Interaction of salmonella enterica with basil and other salad leaves. The ISME Journal, 3 (2). pp. 261-265. doi:10.1038/ismej.2008.95 ISSN 1751-7362.
Spear, Abigail M., Loman, Nicholas J., Atkins, Helen S. and Pallen, Mark J. (2009) Microbial TIR domains : not necessarily agents of subversion? Trends in Microbiology, 17 (9). pp. 393-398. doi:10.1016/j.tim.2009.06.005 ISSN 0966-842X.
Pallen, Mark J. (2009) The rough guide to evolution. Rough Guides; Dorling Kindersley Ltd . London: Rough Guides [2009]. ISBN 9781858289465
Chaudhuri, R. R., Loman, Nicholas J., Snyder, L. A.S., Bailey, C. M., Stekel, D. J. and Pallen, Mark J. (2008) xBASE2 : a comprehensive resource for comparative bacterial genomics. Nucleic Acids Research, 36 (Suppl. 1). D543-D546. doi:10.1093/nar/gkm928 ISSN 0305-1048.
Shaw, Robert K., Berger, C. N., Feys, B., Knutton, S., Pallen, Mark J. and Frankel, Gad (2008) Enterohemorrhagic escherichia coli exploits EspA filaments for attachment to salad leaves. Applied and Environmental Microbiology, 74 (9). pp. 2908-2914. doi:10.1128/AEM.02704-07 ISSN 0099-2240.
Singh, M. P., Shaw, Robert K., Knutton, S., Pallen, Mark J., Crepin, Valerie F. and Frankel, Gad (2008) Identification of amino acid residues within the n-terminal domain of EspA that play a role in EspA filament biogenesis and function. Journal of Bacteriology, 190 (6). pp. 2221-2226. doi:10.1128/JB.01753-07 ISSN 0021-9193.
Arbeloa, Ana, Bulgin, Richard R., MacKenzie, Georgina, Shaw, Robert K., Pallen, Mark J., Crepin, Valerie F., Berger, Cedric N. and Frankel, Gad (2008) Subversion of actin dynamics by EspM effectors of attaching and effacing bacterial pathogens. Cellular Microbiology, 10 (7). pp. 1429-1441. doi:10.1111/j.1462-5822.2008.01136.x ISSN 1462-5814.
Bingle, Lewis E. H., Bailey, Christopher M. and Pallen, Mark J. (2008) Type VI secretion : a beginner's guide. Current Opinion in Microbiology, 11 (1). pp. 3-8. doi:10.1016/j.mib.2008.01.006 ISSN 1369-5274.
Loman, Nicholas J. and Pallen, Mark J. (2008) XDR-TB genome sequencing : a glimpse of the microbiology of the future. Future Microbiology, 3 (2). pp. 111-113. doi:10.2217/17460913.3.2.111 ISSN 1746-0913.
Chaudhuri, R. R., Loman, Nicholas J., Snyder, Lori A. S., Bailey, C. M., Stekel, D. J. and Pallen, Mark J. (2008) xBASE2 : a comprehensive resource for comparative bacterial genomics. Nucleic Acids Research, 36 (Database). D543-D546. doi:10.1093/nar/gkm928 ISSN 0305-1048.
Attwood, N., Whitehead, R., Shukla, A., Parikh, R., Pallen, Mark J. and Anthony, M. (2007) The WXG100 protein secretion system of streptococcus agalactiae. In: Neonatal Society 2007 Summer Meeting, Portsmouth, 28-29 Jun 2007. Published in: Neonatal Society Abstracts, Summer 2007
This list was generated on Thu Apr 25 07:24:40 2024 BST.