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Number of items: 35.
Tan, Yi Lei, Mitchell, James, Klein-Seetharaman, Judith and Nietlispach, Daniel (2019) Characterisation of denatured states of sensory rhodopsin II by solution-state NMR. Journal of Molecular Biology, 431 (15). pp. 2790-2809. doi:10.1016/j.jmb.2019.04.039 ISSN 0022-2836.
Mitchell, James, Balem, Fernanda, Tirupula, Kalyan, Man, David, Dhiman, Harpreet Kaur, Yanamala, Naveena, Ollesch, Julian, Planas-Iglesias, Joan, Jennings, Barbara J., Gerwert, Klaus, Iannaccone, Alessandro and Klein-Seetharaman, Judith (2019) Comparison of the molecular properties of retinitis pigmentosa P23H and N15S amino acid replacements in rhodopsin. PLOS ONE, 14 (5). e0214639. doi:10.1371/journal.pone.0214639 ISSN 1932-6203.
Tejpal, Shilpa, Sanghera, Narinder, Manoharan, Vijayalaxmi, Planas-Iglesias, Joan, Myler, Kate and Klein-Seetharaman, Judith (2019) Towards personalised molecular feedback for weight loss. BMC Obesity, 6 (1). 20. doi:10.1186/s40608-019-0237-5 ISSN 2052-9538.
Mitchell, James, Yanamala, Naveena, Tan, Yi Lei, Gardner, Eric E., Tirupula, Kalyan C., Balem, Fernanda, Sheves, Mordechai, Nietlispach, Daniel and KleinβSeetharaman, Judith (2018) Structural and Functional Consequences of the Weak Binding of Chlorin e6 to Bovine Rhodopsin. Photochemistry and Photobiology, 95 (3). pp. 787-802. doi:10.1111/php.13074 ISSN 0031-8655.
Tan, Yi Lei, Mitchell, James, Klein-Seetharaman, Judith and Nietlispach, Daniel (2018) Characterization of denatured states and reversible unfolding of sensory rhodopsin II. Journal of Molecular Biology, 430 (21). pp. 4068-4086. doi:10.1016/j.jmb.2018.07.031 ISSN 0022-2836.
Mohammadyani, Dariush, Yanamala, Naveena, Samhan-Arias, Alejandro K., Kapralov, Alexander A., Stepanov, German, Nuar, Nick, Planas-Iglesias, Joan, Sanghera, Narinder, Kagan, Valerian E. and Klein-Seetharaman, Judith (2018) Structural characterization of cardiolipin-driven activation of cytochrome c into a peroxidase and membrane perturbation. Biochimica et Biophysica Acta (BBA) - Biomembranes, 1860 (5). pp. 1057-1068. doi:10.1016/j.bbamem.2018.01.009 ISSN 0005-2736.
Maguire, John J., Tyurina, Yulia Y., Mohammadyani, Dariush, Kapralov, Aleksandr A., Anthonymuthu, Tamil S., Qu, Feng, Amoscato, Andrew A., Sparvero, Louis J., Tyurin, Vladimir A., Planas-Iglesias, Joan, He, Rong-Rong, Klein-Seetharaman, Judith, BayΔ±r, HΓΌlya and Kagan, Valerian E. (2017) Known unknowns of cardiolipin signaling : the best is yet to come. Biochimica and Biophysica Acta. Molecular and Cell Biology of Lipids, 1862 (1). pp. 8-24. doi:10.1016/j.bbalip.2016.08.001 ISSN 1388-1981.
Woods, Kristina N., Pfeffer, JΓΌrgen, Dutta, Arpana and Klein-Seetharaman, Judith (2016) Vibrational resonance, allostery, and activation in rhodopsin-like G protein-coupled receptors. Scientific Reports, 6 . 37290. doi:10.1038/srep37290 ISSN 2045-2322.
Kagan, Valerian E., Mao, Gaowei, Qu, Feng, Angeli, Jose Pedro Friedmann, Doll, Sebastian, Croix, Claudette St, Dar, Haider Hussain, Liu, Bing, Tyurin, Vladimir A., Ritov, Vladimir B. et al.
(2016)
Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis.
Nature Chemical Biology, 13
(1).
pp. 81-90.
doi:10.1038/nchembio.2238
ISSN 1552-4450.
Kshirsagar, Meghana, Carbonell, Jaime G., Klein-Seetharaman, Judith and Murugesan, Keerthiram (2016) Multitask matrix completion for learning protein interactions across diseases. In: Singh, Mona, (ed.) Research in Computational Molecular Biology : 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings. Lecture Notes in Computer Science, 9649 . Springer International Publishing, pp. 53-64. ISBN 9783319319575
Sanghera, Narinder, Anderson, Alexander, Nuar, Nick, Xie, Can, Mitchell, Daniel A. and Klein-Seetharaman, Judith (2016) Insulin biosensor development : a case study. International Journal of Parallel, Emergent and Distributed Systems, 32 (1). pp. 119-138. doi:10.1080/17445760.2016.1158817 ISSN 1744-5760.
Mao, Gaowei, Qu, Feng, St Croix, Claudette M., Tyurina, Yulia Y., Planas-Iglesias, Joan, Jiang, Jianfei, Huang, Zhentai, Amoscato, Andrew A., Tyurin, Vladimir A., Kapralov, Alexandr A., Cheikhi, Amin, Maguire, John, Klein-Seetharaman, Judith, BayΔ±r, HΓΌlya and Kagan, Valerian E. (2015) Mitochondrial redox opto-lipidomics reveals mono-oxygenated cardiolipins as pro-apoptotic death signals. ACS Chemical Biology, 11 (2). pp. 530-40. ISSN 1554-8929.
Barneda, David, Planas-Iglesias, Joan, Gaspar, Maria L., Mohammadyani, Dariush, Prasannan, Sunil, Dormann, Dirk, Han, Gil-Soo, Jesch, Stephen A., Carman, George M., Kagan, Valerian, Parker, Malcolm G., Ktistakis, Nicholas T., Klein-Seetharaman, Judith, Dixon, Ann M., Henry, Susan A. and Christian, Mark (2015) The brown adipocyte protein CIDEA promotes lipid droplet fusion via a phosphatidic acid-binding amphipathic helix. eLife, 4 . doi:10.7554/eLife.07485 ISSN 2050-084X.
Balasubramanian, K., Maeda, A., Lee, J. S., Mohammadyani, D., Dar, H. H., Jiang, J. F., St. Croix, C. M., Watkins, S., Tyurin, V. A., Tyurina, Y. Y. et al.
(2015)
Dichotomous roles for externalized cardiolipin in extracellular signaling : promotion of phagocytosis and attenuation of innate immunity.
Science Signaling, 8
(395).
ra95.
doi:10.1126/scisignal.aaa6179
ISSN 1945-0877.
Planas-Iglesias, Joan, Dwarakanath, Himal, Mohammadyani, Dariush, Yanamala, Naveena, Kagan, Valerian E and Klein-Seetharaman, Judith (2015) Cardiolipin interactions with proteins. Biophysical Journal, 109 (6). pp. 1282-94. doi:10.1016/j.bpj.2015.07.034 ISSN 0006-3495.
Kagan, Valerian E., Tyurina, Yulia Y., Tyurin, Vladimir A., Mohammadyani, Dariush, Angeli, Jose Pedro Friedmann, Baranov, Sergei V., Klein-Seetharaman, Judith, Friedlander, Robert M., Mallampalli, Rama K., Conrad, Marcus and Bayir, HΓΌlya (2015) Cardiolipin signaling mechanisms : collapse of asymmetry and oxidation. Antioxidants & Redox Signaling, 22 (18). pp. 1667-1680. doi:10.1089/ars.2014.6219 ISSN 1523-0864.
Kshirsagar, Meghana, Schleker, Sylvia, Carbonell, Jaime and Klein-Seetharaman, Judith (2015) Techniques for transferring host-pathogen protein interactions knowledge to new tasks. Frontiers in Microbiology, 6 . 36. doi:10.3389/fmicb.2015.00036 ISSN 1664-302X.
Schlattner, Uwe, Tokarska-Schlattner, Malgorzata, Epand, Richard M., Boissan, Mathieu, Lacombe, Marie-Lise, Klein-Seetharaman, Judith and Kagan, Valerian E. (2015) Mitochondrial NM23-H4/NDPK-D : a bifunctional nanoswitch for bioenergetics and lipid signaling. Naunyn-Schmiedeberg's Archives of Pharmacology, 388 (2). pp. 271-278. doi:10.1007/s00210-014-1047-4 ISSN 0028-1298.
Schleker, Sylvia, Kshirsagar, Meghana and Klein-Seetharaman, Judith (2015) Comparing humanβSalmonella with plantβSalmonella proteinβprotein interaction predictions. Frontiers in Microbiology, 6 . 45. doi:10.3389/fmicb.2015.00045 ISSN 1664-302X.
Tastan, Oznur, Qi, Yanjun, Carbonell, Jaime G. and Klein-Seetharaman, Judith (2015) Refining literature curated protein interactions using expert opinions. In: Biocomputing 2015, Kohala Coast, Hawaii, USA, 4β8 Jan 2015. Published in: Proceedings of the Pacific Symposium pp. 318-329. doi:10.1142/9789814644730_0031
Mohammadyani, Dariush, Tyurin, Vladimir A., OΧ³Brien, Matthew, Sadovsky, Yoel, Gabrilovich, Dmitry I., Klein-Seetharaman, Judith and Kagan, Valerian E. (2014) Molecular speciation and dynamics of oxidized triacylglycerols in lipid droplets : Mass spectrometry and coarse-grained simulations. Free Radical Biology and Medicine, Volume 76 . pp. 53-60. doi:10.1016/j.freeradbiomed.2014.07.042 ISSN 0891-5849.
Yanamala, N., Kapralov, A. A., Djukic, M., Peterson, J., Mao, G., Klein-Seetharaman, J., Stoyanovsky, D. A., Stursa, J., Neuzil, J. and Kagan, V. E. (2014) Structural re-arrangement and peroxidase activation of cytochrome c by anionic analogues of vitamin E, tocopherol succinate and tocopherol phosphate. Journal of Biological Chemistry, 289 (47). pp. 32488-32498. doi:10.1074/jbc.M114.601377 ISSN 0021-9258.
Dutta, Arpana, Altenbach, Christian, Mangahas, Sheryll, Yanamala, Naveena, Gardner, Eric, Hubbell, Wayne L. and Klein-Seetharaman, Judith (2014) Differential dynamics of extracellular and cytoplasmic domains in denatured states of rhodopsin. Biochemistry, 53 (46). pp. 7160-7169. doi:10.1021/bi401557e ISSN 0006-2960.
Tastan, Oznur, Dutta, Arpana, Booth, Paula and Klein-Seetharaman, Judith (2014) Retinal proteins as model systems for membrane protein folding. Biochimica et Biophysica Acta (BBA) - Bioenergetics, Volume 1837 (Number 5). pp. 656-663. doi:10.1016/j.bbabio.2013.11.021 ISSN 0005-2728.
Tyurina, Yulia Y., Poloyac, Samuel M., Tyurin, Vladimir A., Kapralov, Alexander A., Jiang, Jianfei, Anthonymuthu, Tamil Selvan, Kapralova, Valentina I., Vikulina, Anna S., Jung, Mi-Yeon, Epperly, Michael W., Mohammadyani, Dariush, Klein-Seetharaman, Judith, Jackson, Travis C., Kochanek, Patrick M., Pitt, Bruce R., Greenberger, Joel S., Vladimirov, Yury A., BayΔ±r, HΓΌlya and Kagan, Valerian E. (2014) A mitochondrial pathway for biosynthesis of lipid mediators. Nature Chemistry, 6 (6). pp. 542-552. doi:10.1038/nchem.1924 ISSN 1755-4330.
Cao, W., Ramakrishnan, R., Tuyrin, V. A., Veglia, F., Condamine, T., Amoscato, A., Mohammadyani, D., Johnson, J. J., Min Zhang, L., Klein-Seetharaman, Judith, Celis, E., Kagan, V. E. and Gabrilovich, D. I. (2014) Oxidized lipids block antigen cross-presentation by dendritic cells in cancer. The Journal of Immunology, Volume 192 (Number 6). pp. 2920-2931. doi:10.4049/jimmunol.1302801 ISSN 0022-1767.
Stehle, Jochen, Silvers, Robert, Werner, Karla, Chatterjee, Deep, Gande, Santosh, Scholz, Frank, Dutta, Arpana, Wachtveitl, Josef, Klein-Seetharaman, Judith and Schwalbe, Harald (2014) Characterization of the simultaneous decay kinetics of metarhodopsin states II and III in rhodopsin by solution-state NMR spectroscopy. Angewandte Chemie International Edition, Volume 53 (Number 8). pp. 2078-2084. doi:10.1002/anie.201309581 ISSN 1433-7851.
Stehle, Jochen, Silvers, Robert, Werner, Karla, Chatterjee, Deep, Gande, Santosh, Scholz, Frank, Dutta, Arpana, Wachtveitl, Josef, Klein-Seetharaman, Judith and Schwalbe, Harald (2014) Characterization of the simultaneous decay kinetics of metarhodopsin states II and III in rhodopsin by solution-state NMR spectroscopy. Angewandte Chemie , Volume 126 (Number 8). pp. 2110-2116. doi:10.1002/ange.201309581 ISSN 0044-8249.
Boscia, Alexander L., Treece, Bradley W., Mohammadyani, Dariush, Klein-Seetharaman, Judith, Braun, Anthony R., Wassenaar, Tsjerk A., KlΓΆsgen, Beate and Tristram-Nagle, Stephanie (2014) X-ray structure, thermodynamics, elastic properties and MD simulations of cardiolipin/dimyristoylphosphatidylcholine mixed membranes. Chemistry and Physics of Lipids, Volume 178 . pp. 1-10. doi:10.1016/j.chemphyslip.2013.12.010 ISSN 0009-3084.
Mohammadyani, Dariush, Tyurin, Vladimir A., Amoscato, Andrew A., Gabrilovich, Dmitry I., Klein-Seetharaman, Judith and Kagan, Valerian E. (2014) Computational approaches to understanding the role of oxidized tri-aclyglycerols in suppression of antigen cross-presentation in cancer. In: Biophysical Society 58th Annual Meeting, San Francisco, California, 15-19 Feb 2014. Published in: Biophysical Journal, 106 (2). 805a-806a. doi:10.1016/j.bpj.2013.11.4416 ISSN 0006-3495.
Kshirsagar, M., Carbonell, J. and Klein-Seetharaman, Judith (2013) Multitask learning for host-pathogen protein interactions. Bioinformatics, Volume 29 (Number 13). i217-i226. doi:10.1093/bioinformatics/btt245 ISSN 1367-4803.
Schlattner, U., Tokarska-Schlattner, M., Ramirez, S., Tyurina, Y. Y., Amoscato, A. A., Mohammadyani, D., Huang, Z., Jiang, J., Yanamala, N., Seffouh, A., Boissan, M., Epand, R. F., Epand, R. M., Klein-Seetharaman, Judith, Lacombe, M.-L. and Kagan, V. E. (2013) Dual function of mitochondrial Nm23-H4 protein in phosphotransfer and intermembrane lipid transfer : a cardiolipin-dependent switch. Journal of Biological Chemistry, 288 (1). pp. 111-121. doi:10.1074/jbc.M112.408633 ISSN 0021-9258.
Atkinson, Jeffrey, Kapralov, Alexandr A., Yanamala, Naveena, Tyurina, Yulia Y., Amoscato, Andrew A., Pearce, Linda, Peterson, Jim, Huang, Zhentai, Jiang, Jianfei, Samhan-Arias, Alejandro K. et al.
(2011)
A mitochondria-targeted inhibitor of cytochrome c peroxidase mitigates radiation-induced death.
Nature Communications, 2
.
Article: 497.
doi:10.1038/ncomms1499
ISSN 2041-1723.
Kagan, Valerian E., Konduru, Nagarjun V., Feng, Weihong, Allen, Brett L., Conroy, Jennifer, Volkov, Yuri, Vlasova, Irina I., Belikova, Natalia A., Yanamala, Naveena, Kapralov, Alexander et al.
(2010)
Carbon nanotubes degraded by neutrophil myeloperoxidase induce less pulmonary inflammation.
Nature Nanotechnology, 5
(5).
pp. 354-359.
doi:10.1038/nnano.2010.44
ISSN 1748-3387.
PeΓ±a-Castillo, Lourdes, Tasan, Murat, Myers, Chad L, Lee, Hyunju, Joshi, Trupti, Zhang, Chao, Guan, Yuanfang, Leone, Michele, Pagnani, Andrea, Kim, Wan et al.
(2008)
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.
Genome Biology, 9
(Suppl 1).
S2.
doi:10.1186/gb-2008-9-s1-s2
ISSN 1474-7596.
This list was generated on Fri Apr 19 04:59:36 2024 BST.