Journal Article

Avalos-Pacheco, Alejandra, Rossell, David and Savage, Richard S. (2022) Heterogeneous large datasets integration using bayesian factor regression. Bayesian Analysis, 17 (1). pp. 33-66. doi:10.1214/20-BA1240

Gavard, Remy, Jones, Hugh E., Palacio Lozano, Diana Catalina, Thomas, Mary Joanna, Rossell, David, Spencer, Simon E.F. and Barrow, Mark P. (2020) KairosMS : a new solution for the processing of hyphenated ultrahigh resolution mass spectrometry data. Analytical Chemistry, 92 (5). pp. 3775-3786. doi:10.1021/acs.analchem.9b05113

Gavard, Remy, Palacio Lozano, Diana Catalina, Guzman, Alexander, Rossell, David, Spencer, Simon E. F. and Barrow, Mark P. (2019) Rhapso : automatic stitching of mass segments from fourier transform ion cyclotron resonance mass spectra. Analytical Chemistry, 91 (23). pp. 15130-15137. doi:10.1021/acs.analchem.9b03846

Palacio Lozano, Diana Catalina, Gavard, Remy, Arenas-Diaz, Juan P., Thomas, Mary J., Stranz, David D., Meija-Ospino, Enrique, Guzman, Alexander, Spencer, Simon E. F., Rossell, David and Barrow, Mark P. (2019) Pushing the analytical limits : new insights into complex mixtures using mass spectra segments of constant ultrahigh resolving power. Chemical Science, 10 (29). pp. 6966-6978. doi:10.1039/C9SC02903F

Gavard, Remy, Rossell, David, Spencer, Simon E. F. and Barrow, Mark P. (2017) Themis : batch preprocessing for ultrahigh-resolution mass spectra of complex mixtures. Analytical Chemistry, 89 (21). pp. 11383-11390. doi:10.1021/acs.analchem.7b02345

Rossell, David and Telesca, Donatello (2017) Nonlocalpriors for high-dimensional estimation. Journal of the American Statistical Association, 112 (517). pp. 254-265. doi:10.1080/01621459.2015.1130634

Rossell, David, Stephan-Otto Attolini, Camille, Kroiss, Manuel and Stöcker, Almond (2014) Quantifying alternative splicing from paired-end RNA-sequencing data. The Annals of Applied Statistics, Volume 8 (Number 1). pp. 309-330. doi:10.1214/13-AOAS687

(2013) An integrated model of the transcriptome of HER2-positive breast cancer. PLoS One, Volume 8 (Number 11). Article number e79298. doi:10.1371/journal.pone.0079298

Font-Burgada, Joan, Reina, Oscar, Rossell, David and Azorin, Fernando (2013) chroGPS, a global chromatin positioning system for the functional analysis and visualization of the epigenome. Nucleic Acids Research, Volume 42 (Number 4). pp. 2126-2137. doi:10.1093/nar/gkt1186

Rossell, David and Müller, Peter (2013) Sequential stopping for high-throughput experiments. Biostatistics, Volume 14 (Number 1). pp. 75-86. doi:10.1093/biostatistics/kxs026

Calon, Alexandre, Espinet, Elisa, Palomo-Ponce, Sergio, Tauriello, Daniele V.F., Iglesias, Mar, Céspedes, María Virtudes, Sevillano, Marta, Nadal, Cristina, Jung, Peter, Zhang, Xiang H.-F., Byrom, Daniel, Riera, Antoni, Rossell, David, Mangues, Ramón, Massagué, Joan, Sancho, Elena and Batlle, Eduard (2012) Dependency of colorectal cancer on a TGF-β-driven program in stromal cells for metastasis initiation. Cancer Cell, Volume 22 (Number 5). pp. 571-584. doi:10.1016/j.ccr.2012.08.013

Lloret-Llinares, Marta, Pérez-Lluch, Sílvia, Rossell, David, Morán, Tomás, Ponsa-Cobas, Joan, Auer, Herbert, Corominas, Montserrat and Azorín, Fernando (2012) dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes. Nucleic Acids Research, Volume 40 (Number 19). pp. 9493-9505. doi:10.1093/nar/gks773

Johnson, Valen E. and Rossell, David (2012) Bayesian model selection in high-dimensional settings. Journal of the American Statistical Association, Vol.107 (No.498). pp. 649-660. doi:10.1080/01621459.2012.682536

Planet, E., Attolini, C. S.-O., Reina, O., Flores, O. and Rossell, David (2012) htSeqTools : high-throughput sequencing quality control, processing and visualization in R. Bioinformatics, Volume 28 (Number 4). pp. 589-590. doi:10.1093/bioinformatics/btr700

(2012) Deep sequence analysis of on-small cell lung cancer : integrated analysis of gene expression, alternative splicing, and single nucleotide variations in lung adenocarcinomas with and without oncogenic KRAS mutations. Frontiers in Oncology, Volume 2 . Article number 12. doi:10.3389/fonc.2012.00012

Jung, Peter, Sato, Toshiro, Merlos-Suárez, Anna, Barriga, Francisco M., Iglesias, Mar, Rossell, David, Auer, Herbert, Gallardo, Mercedes, Blasco, Maria A., Sancho, Elena, Clevers, Hans and Batlle, Eduard (2011) Isolation and in vitro expansion of human colonic stem cells. Nature Medicine, Volume 17 (Number 10). pp. 1225-1227. doi:10.1038/nm.2470

Merlos-Suárez, Anna, Barriga, Francisco M., Jung, Peter, Iglesias, Mar, Céspedes, María Virtudes, Rossell, David, Sevillano, Marta, Hernando-Momblona, Xavier, da Silva-Diz, Victoria, Muñoz, Purificación, Clevers, Hans, Sancho, Elena, Mangues, Ramón and Batlle, Eduard (2011) The intestinal stem cell signature identifies colorectal cancer stem cells and predicts disease relapse. Cell Stem Cell, Volume 8 (Number 5). pp. 511-524. doi:10.1016/j.stem.2011.02.020

Johnson, Valen E. and Rossell, David (2010) On the use of non-local prior densities in Bayesian hypothesis tests. Journal of the Royal Statistical Society Series B: Statistical Methodology, Vol.72 (No.2). pp. 143-170. doi:10.1111/j.1467-9868.2009.00730.x

Rossell, David (2009) GaGa : a parsimonious and flexible model for differential expression analysis. Annals of Applied Statistics, Vol.3 (No.3). pp. 1035-1051. doi:10.1214/09-AOAS244

Rossell, David, Guerra, Rudy and Scott, Clayton (2008) Semi-parametric differential expression analysis via partial mixture estimation. Statistical Applications in Genetics and Molecular Biology, Volume 7 (Number 1). doi:10.2202/1544-6115.1333

Book Item

Rossell, David, Telesca, Donatello and Johnson, Valen E. (2013) High-dimensional Bayesian classifiers using non-local priors. In: Giudici, Paolo and Ingrassia, Salvatore and Vichi, Maurizio, (eds.) Statistical Models for Data Analysis: Studies in Classification, Data Analysis, and Knowledge Organization. Springer International Publishing, pp. 305-313. ISBN 9783319000312