Journal Article

Senghore, Madikay, Chaguza, Chrispin, Bojang, Ebrima, Tientcheu, Peggy-Estelle, Bancroft, Rowan E., Lo, Stephanie W., Gladstone, Rebecca A., McGee, Lesley, Worwui, Archibald, Foster-Nyarko, Ebenezer, Ceesay, Fatima, Okoi, Catherine Bi, Klugman, Keith P., Breiman, Robert F., Bentley, Stephen D., Adegbola, Richard, Antonio, Martin, Hanage, William P. and Kwambana-Adams, Brenda A. (2022) Widespread sharing of pneumococcal strains in a rural African setting : proximate villages are more likely to share similar strains that are carried at multiple timepoints. Microbial Genomics, 8 (2). doi:10.1099/mgen.0.000732

(2021) The etiology of pneumonia from analysis of lung aspirate and pleural fluid samples : findings from the Pneumonia Etiology Research for Child Health (PERCH) Study. Clinical Infectious Diseases, 73 (11). e3788-e3796. doi:10.1093/cid/ciaa1032

(2019) International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBioMedicine, 43 . pp. 338-346. doi:10.1016/j.ebiom.2019.04.021

(2019) The incidence, aetiology, and adverse clinical consequences of less severe diarrhoeal episodes among infants and children residing in low-income and middle-income countries: a 12-month case-control study as a follow-on to the Global Enteric Multicenter Study (GEMS). The Lancet Global Health, 7 (5). e568-e584. doi:10.1016/S2214-109X(19)30076-2

(2018) Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. Scientific Reports, 8 (1). 14194 . doi:10.1038/s41598-018-32475-2

(2018) Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1). 11269. doi:10.1038/s41598-018-29620-2

Morter, Richard, Adetifa, Ifedayo, Antonio, Martin, Touray, Fatima, de Jong, Bouke C., Gower, Charlotte M. and Gehre, Florian (2018) Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia. BMC Research Notes, 11 (1). 31. doi:10.1186/s13104-018-3134-y

Kariuki, Samuel, Keddy, Karen H., Antonio, Martin and Okeke, Iruka N. (2018) Antimicrobial resistance surveillance in Africa: Successes, gaps and a roadmap for the future. African Journal of Laboratory Medicine, 7 (2). doi:10.4102/ajlm.v7i2.924

Mokrousov, Igor, Senghore, Madikay, Otu, Jacob, Witney, Adam, Gehre, Florian, Doughty, Emma L., Kay, Gemma L., Butcher, Phillip, Salako, Kayode, Kehinde, Aderemi, Onyejepu, Nneka, Idigbe, Emmanuel, Corrah, Tumani, de Jong, Bouke, Pallen, Mark J. and Antonio, Martin (2017) Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria. PLoS One, 12 (9). e0184510. doi:10.1371/journal.pone.0184510

Ho, Paulo Lee, Mendy, Awa L., Agbla, Schadrac C., Odutola, Aderonke A., Antonio, Martin, Greenwood, Brian M., Sutherland, Jayne S. and Ota, Martin O. C. (2017) Kinetics of antibodies against pneumococcal proteins and their relationship to nasopharyngeal carriage in the first two months of life. PLoS One, 12 (10). e0185824. doi:10.1371/journal.pone.0185824

Ebruke, Chinelo, Roca, Anna, Egere, Uzochukwu, Darboe, Ousainou, Hill, Philip C., Greenwood, Brian (Brian A.), Wren, Brendan, Adegbola, Richard A. and Antonio, Martin (2015) Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniaeserotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. PeerJ PrePrints, Volume 3 . Article number e903. doi:10.7717/peerj.903

Secka, Ousman, Moodley, Yoshan, Antonio, Martin, Berg, Douglas E., Tapgun, Mary, Walton, Robert T., Worwui, Archibald, Thomas, Vivat, Corrah, Tumani, Thomas, Julian E. and Adegbola, Richard A. (2014) Population genetic analyses of helicobacter pylori isolates from Gambian adults and children. PLoS One, 9 (10). e109466. doi:10.1371/journal.pone.0109466

Doughty, Emma L., Sergeant, Martin J., Ifedayo, Adetifa M. O., Antonio, Martin and Pallen, Mark J. (2014) Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer. PeerJ PrePrints . Article number e585 . doi:10.7717/peerj.585

Secka, O., Berg, D. E., Antonio, Martin, Corrah, T., Tapgun, M., Walton, Robert T., Thomas, V., Galano, J. J., Sancho, J., Adegbola, R. A. and Thomas, J. E. (2013) Antimicrobial susceptibility and resistance patterns among helicobacter pylori strains from the Gambia, West Africa. Antimicrobial Agents and Chemotherapy, 57 (3). pp. 1231-1237.

Adetifa, I. M., Ota, M. O. C., Jeffries, D. J., Lugos, M. D., Hammond, A. S., Battersby, N. J., Owiafe, P. K., Donkor, S. D., Antonio, Martin, Ibanga, H. B., Brookes, R. H., Aka, P., Walton, Robert T., Adegbola, R. A. and Hill, P. C. (2013) Interferon-γ ELISPOT as a biomarker of treatment efficacy in latent tuberculosis infection a clinical trial. American Journal of Respiratory and Critical Care Medicine, 187 (4). pp. 439-445. doi:10.1164/rccm.201208-1352OC

Williams, Tiffany M., Loman, Nicholas J., Ebruke, Chinelo, Musher, Daniel M., Adegbola, Richard A., Pallen, Mark J., Weinstock, George M. and Antonio, Martin (2012) Genome analysis of a highly virulent serotype 1 strain of streptococcus pneumoniae from West Africa. PLoS One, Volume 7 (Number 10). Article number e26742. doi:10.1371/journal.pone.0026742

Secka, O., Antonio, Martin, Berg, D. E., Tapgun, M., Bottomley, C., Thomas, V., Walton, Robert T., Corrah, T., Thomas, J. and Adegbola, R. A. (2011) Mixed infection with cagA positive and cagA negative strains of Helicobacter pylori lowers disease burden in The Gambia. PLoS One, 6 (11). e27954.

Secka, O., Antonio, Martin, Tapgun, M., Berg, D. E., Bottomley, C., Thomas, V., Walton, Robert T., Corrah, T., Adegbola, R. A. and Thomas, J. E. (2011) PCR-based genotyping of Helicobacter pylori of Gambian children and adults directly from biopsy specimens and bacterial cultures. Gut Pathogens, 3 (1). 5.