Kay, Gemma L., Sergeant, Martin J., Zhou, Zhemin, Chan, Jacqueline, Millard, Andrew D., Quick, Joshua, Szikossy, Ildikó, Pap, Ildikó, Spigelman, Mark, Loman, Nicholas J., Achtman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2015) Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe. Nature Communications, Volume 6 . pp. 1-9. Article number 6717. doi:10.1038/ncomms7717 ISSN 2041-1723.

Halachev, Mihail R., Chan, Jacqueline, Constantinidou, Chrystala, Cumley, Nicola, Bradley, Craig, Smith-Banks, Matthew, Oppenheim, Beryl and Pallen, Mark J. (2014) Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine, Volume 6 (Number 11). pp. 1-13. Article number 70. doi:10.1186/s13073-014-0070-x ISSN 1756-994X.

Chan, Jacqueline, Millard, Andrew D., Mann, Nicholas H. and Schäfer, Hendrik (2014) Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes. Frontiers in Microbiology, Volume 5 . Article number 506. doi:10.3389/fmicb.2014.00506 ISSN 1664-302X.

Quraishi, M. N., Sergeant, Martin J., Kay, Gemma L., Iqbal, Tariq, Constantinidou, Chrystala, Chan, Jacqueline, Trivedi, Palak J., Ferguson, James W., Adams, David H., Pallen, Mark J. and Hirschfield, Gideon (2014) Probing the microbiota in PSC : the gut adherent microbiota of PSC-IBD is distinct to that of IBD and controls. In: The 65th Annual Meeting of the American Association for the Study of Liver Diseases: The Liver Meeting 2014, Nov 2014. Published in: Hepatology, 60 (S1). 264A-267A. doi:10.1002/hep.27470 ISSN 0270-9139.

Chan, Jacqueline, Sergeant, Martin J., Lee, Oona Y.-C., Minnikin, David E., Besra, Gurdyal S., Pap, Ilidkó, Spigelman, Mark, Donoghue, Helen D. and Pallen, Mark J. (2013) Metagenomic analysis of tuberculosis in a mummy. New England Journal Of Medicine , Volume 369 (Number3). pp. 289-290. doi:10.1056/NEJMc1302295

Gladstone, Rebecca A., Loman, Nicholas J., Constantinidou, Chrystala, Tocheva, Anna S., Jefferies, Johanna M. C., Faust, Saul N., O’Connor, Leigh, Chan, Jacqueline, Pallen, Mark J. and Clarke, Stuart C. (2013) Clonal expansion within pneumococcal serotype 6C after use of seven-valent vaccine. PLoS One, Volume 8 (Number 5). e64731. doi:10.1371/journal.pone.0064731 ISSN 1932-6203.

Loman, Nicholas J., Constantinidou, Chrystala, Christner, Martin, Rohde, Holger, Chan, Jacqueline, Quick, Joshua, Weir, Jacqueline C., Quince, Christopher, Smith, Geoffrey, Betley, Jason R., Aepfelbacher, Martin and Pallen, Mark J. (2013) A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-Toxigenic Escherichia coli O104:H4. JAMA: The Journal of the American Medical Association, Volume 309 (Number 14). pp. 1502-1510. doi:10.1001/jama.2013.3231 ISSN 0098-7484.

Loman, Nicholas J., Constantinidou, Chrystala, Chan, Jacqueline, Halachev, Mihail R., Sergeant, Martin J., Penn, Charles W., Robinson, Esther R. and Pallen, Mark J. (2012) High-throughput bacterial genome sequencing : an embarrassment of choice, a world of opportunity. Nature Reviews Microbiology, 10 (9). pp. 599-606. doi:10.1038/nrmicro2850 ISSN 1740-1526.

Chan, Jacqueline, Halachev, Mihail R., Loman, Nicholas J., Constantinidou, Chrystala and Pallen, Mark J. (2012) Defining bacterial species in the genomic era : insights from the genus Acinetobacter. BMC Microbiology, 12 (1). 302. doi:10.1186/1471-2180-12-302 ISSN 1471-2180.

Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.

Chan, Jacqueline, Pallen, Mark J., Oppenheim, Beryl and Constantinidou, Chrystala (2012) Genome sequencing in clinical microbiology. Nature Biotechnology, Volume 30 (Number 11). pp. 1068-1071. doi:10.1038/nbt.2410 ISSN 1087-0156.

Chan, Jacqueline, Halachev, Mihail R., Yates, Emma, Smith, Grace and Pallen, Mark J. (2012) Whole-genome sequence of the emerging pathogen mycobacterium abscessus strain 47J26. Journal of Bacteriology, Volume 194 (Number 2). p. 549. doi:10.1128/JB.06440-11 ISSN 0021-9193.

Chan, Jacqueline (2010) Bacteriophages of marine Roseobacter. PhD thesis, University of Warwick.