2020

Sagar, Nidhi M., Duboc, Henri, Kay, Gemma L., Alam, Mohammad T., Wicaksono, Alfian, Covington, James A., Quince, Christopher , Kokkorou, Margarita, Svolos, Vaios, Palmieri, Lola J., Gerasimidis, Konstantinos, Walters, Julian R. F. and Arasaradnam, Ramesh P. (2020) The pathophysiology of bile acid diarrhoea : differences in the colonic microbiome, metabolome and bile acids. Scientific Reports, 10 (1). 20436. doi:10.1038/s41598-020-77374-7

Alam, Mohammad T., Amos, Gregory C. A., Murphy, Andrew, Murch, Simon, Wellington, E. M. H. and Arasaradnam, Ramesh P. (2020) Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels. Gut Pathogens, 12 . 2020. doi:10.1186/s13099-019-0341-6

2019

Olin-Sandoval, Viridiana, Yu, Jason Shu Lim, Miller-Fleming, Leonor, Alam, Mohammad T., Kamrad, Stephan, Correia-Melo, Clara, Haas, Robert, Segal, Joanna, Peña Navarro, David Alejandro, Herrera-Dominguez, Lucia, Méndez-Lucio, Oscar, Vowinckel, Jakob, Mülleder, Michael and Ralser, Markus (2019) Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism. Nature, 572 (7768). pp. 249-253. doi:10.1038/s41586-019-1442-6

2018

Muter, Joanne, Alam, Mohammad T., Vrljicak, Pavle, Barros, Flavio S. V., Ruane, Peter T., Ewington, Lauren J., Aplin, John D., Westwood, Melissa and Brosens, Jan J. (2018) The glycosyltransferase EOGT regulates adropin expression in decidualizing human endometrium. Endocrinology, 159 (2). pp. 994-1004. doi:10.1210/en.2017-03064

2017

Adaikalakoteswari, Antonysunil, Vatish, Manu, Alam, Mohammad T., Ott, Sascha, Kumar, Sudhesh and Saravanan, P. (2017) Low vitamin B12 in pregnancy is associated with adipose-derived circulating miRs targeting PPARγ and insulin resistance. The Journal of Clinical Endocrinology & Metabolism, 102 (11). pp. 4200-4209. doi:10.1210/jc.2017-01155

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. doi:10.1038/ncomms16018

2016

Gostner, Johanna M., Zeisler, Johannes, Alam, Mohammad T., Gruber, Peter, Fuchs, Dietmar, Becker, Kathrin, Neubert, Kerstin, Kleinhappl, Markus, Martini, Stefan and Überall, Florian (2016) Cellular reactions to long-term volatile organic compound (VOC) exposures. Scientific Reports, 6 . 37842.

Mülleder, Michael, Calvani, Enrica, Alam, Mohammad T., Wang, Richard Kangda, Eckerstorfer, Florian, Zelezniak, Aleksej and Ralser, Markus (2016) Functional metabolomics describes the yeast biosynthetic regulome. Cell, 167 (2). 553-565.e12.

Paglia, Giuseppe, Stocchero, Matteo, Cacciatore, Stefano, Lai, Steven, Angel, Peggi, Alam, Mohammad T., Keller, Markus, Ralser, Markus and Astarita, Giuseppe (2016) Unbiased metabolomic investigation of Alzheimer's disease brain points to dysregulation of mitochondrial aspartate metabolism. Journal of Proteome Research, 15 (2). pp. 608-618.

Alam, Mohammad T., Zelezniak, Aleksej, Mülleder, Michael, Shliaha, Pavel, Schwarz, Roland, Capuano, Floriana, Vowinckel, Jakob, Radmaneshfar, Elahe, Krüger, Antje, Calvani, Enrica, Michel, Steve, Börno, Stefan, Christen, Stefan, Patil, Kiran Raosaheb, Timmermann, Bernd, Lilley, Kathryn S. and Ralser, Markus (2016) The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature microbiology, 1 . 15030.

2015

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943.

Stincone, Anna, Prigione, Alessandro, Cramer, Thorsten, Wamelink, Mirjam M C, Campbell, Kate, Cheung, Eric, Olin-Sandoval, Viridiana, Grüning, Nana-Maria, Krüger, Antje, Alam, Mohammad T., Keller, Markus A, Breitenbach, Michael, Brindle, Kevin M, Rabinowitz, Joshua D and Ralser, Markus (2015) The return of metabolism : biochemistry and physiology of the pentose phosphate pathway. Biological Reviews, 90 (3). pp. 927-63. doi:10.1111/brv.12140

Alam, Mohammad T., Manjeri, Ganesh R, Rodenburg, Richard J, Smeitink, Jan A M, Notebaart, Richard A, Huynen, Martijn, Willems, Peter H G M and Koopman, Werner J H (2015) Skeletal muscle mitochondria of NDUFS4-/- mice display normal maximal pyruvate oxidation and ATP production. Biochimica et biophysica acta, 1847 (6-7). pp. 526-33. doi:doi: 10.1016/j.bbabio.2015.02.006

Watschinger, Katrin, Keller, Markus A., McNeill, Eileen, Alam, Mohammad T., Lai, Steven, Sailer, Sabrina, Rauch, Veronika, Patel, Jyoti, Hermetter, Albin, Golderer, Georg, Geley, Stephan, Werner-Felmayer, Gabriele, Plumb, Robert S., Astarita, Giuseppe, Ralser, Markus, Channon, Keith M. and Werner, Ernst R. (2015) Tetrahydrobiopterin and alkylglycerol monooxygenase substantially alter the murine macrophage lipidome. Proceedings of the National Academy of Sciences of the United States of America, 112 (8). pp. 2431-6.

2011

Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. doi:10.1186/1756-0500-4-325

Medema, Marnix H, Alam, Mohammad T., Breitling, Rainer and Takano, Eriko (2011) The future of industrial antibiotic production: from random mutagenesis to synthetic biology. Bioengineered, 2 (4). pp. 230-3.

Alam, Mohammad Tauqee, Medema, Marnix H, Takano, Eriko and Breitling, Rainer (2011) Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism. FEBS Letters, 585 (14). pp. 2389-94. doi:10.1016/j.febslet.2011.06.014

2010

Medema, Marnix H, Alam, Mohammad T., Heijne, Wilbert H M, Van den Berg, Marco, Müller, Ulrike, Trefzer, Axel, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus. Microbial Biotechnology, 4 (2). pp. 300-5. doi:10.1111/j.1751-7915.2010.00226.x

Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T., Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution, 2 . pp. 212-24. doi:doi: 10.1093/gbe/evq013

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Alam, Mohammad Tauqee, Merlo, Maria Elena, Takano, Eriko and Breitling, Rainer (2010) Genome-based phylogenetic analysis of Streptomyces and its relatives. Molecular Phylogenetics and Evolution, 54 (3). pp. 763-72. doi:doi: 10.1016/j.ympev.2009.11.019

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10