2017

Alam, Mohammad T., Olin-Sandoval, Viridiana, Stincone, Anna, Keller, Markus A., Zelezniak, Aleksej, Luisi, Ben and Ralser, Markus. (2017) The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. Nature Communications, 8 . 16018. ISSN 2041-1723

2016

Gostner, Johanna M., Zeisler, Johannes, Alam, Mohammad T., Gruber, Peter, Fuchs, Dietmar, Becker, Kathrin, Neubert, Kerstin, Kleinhappl, Markus, Martini, Stefan and Überall, Florian. (2016) Cellular reactions to long-term volatile organic compound (VOC) exposures. Scientific Reports, 6 . 37842. ISSN 2045-2322

Mülleder, Michael, Calvani, Enrica, Alam, Mohammad T., Wang, Richard Kangda, Eckerstorfer, Florian, Zelezniak, Aleksej and Ralser, Markus. (2016) Functional metabolomics describes the yeast biosynthetic regulome. Cell, 167 (2). 553-565.e12. ISSN 1097-4172

Paglia, Giuseppe, Stocchero, Matteo, Cacciatore, Stefano, Lai, Steven, Angel, Peggi, Alam, Mohammad T., Keller, Markus, Ralser, Markus and Astarita, Giuseppe. (2016) Unbiased metabolomic investigation of Alzheimer's disease brain points to dysregulation of mitochondrial aspartate metabolism. Journal of Proteome Research, 15 (2). pp. 608-618. ISSN 1535-3893

Alam, Mohammad T., Zelezniak, Aleksej, Mülleder, Michael, Shliaha, Pavel, Schwarz, Roland, Capuano, Floriana, Vowinckel, Jakob, Radmaneshfar, Elahe, Krüger, Antje, Calvani, Enrica, Michel, Steve, Börno, Stefan, Christen, Stefan, Patil, Kiran Raosaheb, Timmermann, Bernd, Lilley, Kathryn S. and Ralser, Markus. (2016) The metabolic background is a global player in Saccharomyces gene expression epistasis. Nature microbiology, 1 . 15030. ISSN 2058-5276

2015

Campbell, Kate, Vowinckel, Jakob, Mülleder, Michael, Malmsheimer, Silke, Lawrence, Nicola, Calvani, Enrica, Miller-Fleming, Leonor, Alam, Mohammad T., Christen, Stefan, Keller, Markus A. and Ralser, Markus. (2015) Self-establishing communities enable cooperative metabolite exchange in a eukaryote. eLife, 4 . e09943. ISSN 2050-084X

Stincone, Anna, Prigione, Alessandro, Cramer, Thorsten, Wamelink, Mirjam M C, Campbell, Kate, Cheung, Eric, Olin-Sandoval, Viridiana, Grüning, Nana-Maria, Krüger, Antje, Alam, Mohammad T., Keller, Markus A, Breitenbach, Michael, Brindle, Kevin M, Rabinowitz, Joshua D and Ralser, Markus. (2015) The return of metabolism: biochemistry and physiology of the pentose phosphate pathway. Biological Reviews, 90 (3). pp. 927-63. ISSN 1464-7931

Alam, Mohammad T., Manjeri, Ganesh R, Rodenburg, Richard J, Smeitink, Jan A M, Notebaart, Richard A, Huynen, Martijn, Willems, Peter H G M and Koopman, Werner J H. (2015) Skeletal muscle mitochondria of NDUFS4-/- mice display normal maximal pyruvate oxidation and ATP production. Biochimica et biophysica acta, 1847 (6-7). pp. 526-33. ISSN 0006-3002

Watschinger, Katrin, Keller, Markus A., McNeill, Eileen, Alam, Mohammad T., Lai, Steven, Sailer, Sabrina, Rauch, Veronika, Patel, Jyoti, Hermetter, Albin, Golderer, Georg, Geley, Stephan, Werner-Felmayer, Gabriele, Plumb, Robert S., Astarita, Giuseppe, Ralser, Markus, Channon, Keith M. and Werner, Ernst R.. (2015) Tetrahydrobiopterin and alkylglycerol monooxygenase substantially alter the murine macrophage lipidome. Proceedings of the National Academy of Sciences of the United States of America, 112 (8). pp. 2431-6. ISSN 0027-8424

2011

Alam, Mohammad Tauqee, Takano, Eriko and Breitling, Rainer. (2011) Prioritizing orphan proteins for further study using phylogenomics and gene expression profiles in Streptomyces coelicolor. BMC Research Notes, 4 . p. 325. ISSN 1756-0500

Medema, Marnix H, Alam, Mohammad T., Breitling, Rainer and Takano, Eriko. (2011) The future of industrial antibiotic production: from random mutagenesis to synthetic biology. Bioengineered, 2 (4). pp. 230-3. ISSN 1949-1026

Alam, Mohammad Tauqee, Medema, Marnix H, Takano, Eriko and Breitling, Rainer. (2011) Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism. FEBS Letters, 585 (14). pp. 2389-94. ISSN 0014-5793

2010

Medema, Marnix H, Alam, Mohammad T., Heijne, Wilbert H M, Van den Berg, Marco, Müller, Ulrike, Trefzer, Axel, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko. (2010) Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus. Microbial Biotechnology, 4 (2). pp. 300-5. ISSN 1751-7907

Medema, Marnix H, Trefzer, Axel, Kovalchuk, Andriy, van den Berg, Marco, Müller, Ulrike, Heijne, Wilbert, Wu, Liang, Alam, Mohammad T., Ronning, Catherine M, Nierman, William C, Bovenberg, Roel A L, Breitling, Rainer and Takano, Eriko. (2010) The sequence of a 1.8-mb bacterial linear plasmid reveals a rich evolutionary reservoir of secondary metabolic pathways. Genome Biology and Evolution, 2 . pp. 212-24. ISSN 1759-6653

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. ISSN 1471-2164

Alam, Mohammad Tauqee, Merlo, Maria Elena, Takano, Eriko and Breitling, Rainer. (2010) Genome-based phylogenetic analysis of Streptomyces and its relatives. Molecular Phylogenetics and Evolution, 54 (3). pp. 763-72. ISSN 1055-7903