Algérie.Ministère de l'Enseignement Supérieur et de la Recherche Scientifique

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524

Australian Research Council (ARC)

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. doi:10.1016/j.vetmic.2010.06.024

Austria. Bundesministerium für Verkehr, Innovation und Technologie [Federal Ministry of Transport, Innovation and Technology‏ ] (BMVIT)

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

Austria. Bundesministerium für Wirtschaft, Familie und Jugend [Federal Ministry of Economy, Family, and Youth] (BMWFJ)

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

Bees for Development

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

Belgium. Politique scientifique fédérale [Belgian State Science Policy Office] (BELSPO)

Dealtry, Simone, Ding, Guo-Chun, Weichelt, Viola, Dunon, Vincent, Schlüter, Andreas, Martini, María Carla, Papa, María Florencia Del, Lagares, Antonio, Amos, Gregory C. A., Wellington, E. M. H., Gaze, William H., Sipkema, Detmer, Sjöling, Sara, Springael, Dirk, Heuer, Holger, Elsas, J. D. van, Thomas, Christopher M. and Smalla, Kornelia (2014) Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats. PLoS One, Volume 9 (Number 2). Article number e89922. doi:10.1371/journal.pone.0089922

Biotechnology and Biological Sciences Research Council (BBSRC)

Muzafar, Mohd, Calvo-Bado, Leo A., Green, Laura E., Smith, Edward M., Russell, Claire L., Grogono-Thomas, Rosemary and Wellington, E. M. H. (2015) The role of the environment in transmission of Dichelobacter nodosus between ewes and their lambs. Veterinary Microbiology, 179 (1-2). pp. 53-59. doi:10.1016/j.vetmic.2015.04.010

Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)

Lidbury, Ian, Fraser, Tandra, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbett, Mark, Hammond, John P. and Wellington, E. M. H. (2017) The ‘known’ genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils. MicrobiologyOpen . e00474. doi:10.1002/mbo3.474

Lidbury, Ian, Murphy, Andrew, Fraser, Tandra D., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbetts, Mark, Hammond, John P., Scanlan, David J. and Wellington, E. M. H. (2017) Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation. Scientific Reports, 7 (1). 2179. doi:10.1038/s41598-017-02327-6

Lidbury, Ian, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Amanda, Hammond, John P. and Wellington, E. M. H. (2016) Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology, 18 (10). pp. 3535-3549. doi:10.1111/1462-2920.13390

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

King, Hayley C., Murphy, Andrew, James, Phillip, Travis, Emma Rachel, Porter, David, Hung, Yu-Jiun, Sawyer, Jason, Cork, Jennifer, Delahay, Richard J., Gaze, William H., Courtenay, Orin and Wellington, E. M. H. (2015) The variability and seasonality of the environmental reservoir of Mycobacterium bovis shed by wild European badgers. Scientific Reports, 5 . pp. 1-7. 12318. doi:10.1038/srep12318

Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3–4). pp. 321-327. doi:10.1016/j.vetmic.2015.01.022

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

Smith, Edward M., Green, Olivia, Calvo-Bado, Leo A., Witcomb, Luci, Grogono-Thomas, Rosemary, Russell, Claire L., Brown, J. C., Medley, Graham, Kilbride, A. L., Wellington, E. M. H. and Green, Laura E. (2014) Dynamics and impact of footrot and climate on hoof horn length in 50 ewes from one farm over a period of 10 months. The Veterinary Journal, Volume 201 (Number 3). pp. 295-301. doi:10.1016/j.tvjl.2014.05.021

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

Russell, Claire L., Smith, Edward M., Calvo-Bado, Leo A., Green, Laura E., Wellington, E. M. H., Medley, Graham, Moore, Lynda J. and Grogono-Thomas, Rosemary (2014) Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements. Infection, Genetics and Evolution , Volume 22 (Number 1). pp. 273-279. doi:10.1016/j.meegid.2013.05.026

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. doi:10.1371/journal.pone.0035756

Calvo-Bado, Leo A., Oakley, Brian B., Dowd, Scot E., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Bateman, Vicky, Gaze, William H., Witcomb, Luci, Grogono-Thomas, Rosemary, Kaler, Jasmeet, Russell, Claire L. and Wellington, E. M. H. (2011) Ovine pedomics : the first study of the ovine foot 16S rRNA-based microbiome. ISME Journal, Vol.5 (No.9). pp. 1426-1437. doi:10.1038/ismej.2011.25

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. doi:10.1371/journal.pone.0017916

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. doi:10.1371/journal.pone.0027369

Kaler, Jasmeet, Medley, Graham, Grogono-Thomas, Rosemary, Wellington, E. M. H., Calvo-Bado, Leo A., Wassink, Geert J., King, Elisabeth M., Moore, L. J., Russell, Claire L. and Green, Laura E. (2010) Factors associated with changes of state of foot conformation and lameness in a flock of sheep. Preventive Veterinary Medicine, Vol.97 (No.3/4). pp. 237-244. doi:10.1016/j.prevetmed.2010.09.019

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. doi:10.1016/j.vetmic.2010.06.024

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Sweeney, F. P., Courtenay, Orin, Hibberd, V., Hewinson, R. G., Reilly, L. A., Gaze, William H. and Wellington, E. M. H. (2007) Environmental monitoring of Mycobacterium bovis in badger feces and badger sett soil by real-time PCR, as confirmed by immunofluorescence, immunocapture, and cultivation. Applied and Environmental Microbiology, Vol.73 (No.22). pp. 7471-7473. doi:10.1128/AEM.00978-07

Biotechnology and Biological Sciences Research Council (Great Britain) (BBSRC)

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. doi:10.1371/journal.pone.0068648

Canada. Agriculture and Agri-Food Canada

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Centre for Ecology and Hydrology (Great Britain) (CEH)

Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035

Consiglio nazionale delle ricerche (Italy) (CNR)

Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Maserti, Bianca Elena, Leo, A. Calvo-Bado, Ceccanti, Brunello and Wellington, E. M. H. (2008) Comparison of extraction methods for recovery of extracellular beta-glucosidase in two different forest soils. Soil Biology & Biochemistry, Vol.40 (No.9). pp. 2156-2161. doi:10.1016/j.soilbio.2008.05.001

Egyptian Government

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

Environment and Human Health Programme (EHHP)

(2009) Impacts of Climate Change on indirect human exposure to pathogens and chemicals from agriculture. Environmental Health Perspectives, Vol.11 (No.4). pp. 508-514. doi:10.1289/ehp.0800084

Ethiopian Institute of Biodiversity (EIB)

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. doi:10.1371/journal.pone.0068648

European Commission (EC)

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10

Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Maserti, Bianca Elena, Leo, A. Calvo-Bado, Ceccanti, Brunello and Wellington, E. M. H. (2008) Comparison of extraction methods for recovery of extracellular beta-glucosidase in two different forest soils. Soil Biology & Biochemistry, Vol.40 (No.9). pp. 2156-2161. doi:10.1016/j.soilbio.2008.05.001

European Regional Development Fund (ERDF)

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

European Research Area Network (ERA-NET)

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10

European Science Foundation (ESF)

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

European Union (EU)

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Fifth Framework Programme (European Commission) (FP5)

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Great Britain. Dept. for Environment, Food & Rural Affairs (DEFRA)

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. doi:10.1371/journal.pone.0017916

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. doi:10.1371/journal.pone.0027369

Kaler, Jasmeet, Medley, Graham, Grogono-Thomas, Rosemary, Wellington, E. M. H., Calvo-Bado, Leo A., Wassink, Geert J., King, Elisabeth M., Moore, L. J., Russell, Claire L. and Green, Laura E. (2010) Factors associated with changes of state of foot conformation and lameness in a flock of sheep. Preventive Veterinary Medicine, Vol.97 (No.3/4). pp. 237-244. doi:10.1016/j.prevetmed.2010.09.019

(2009) Impacts of Climate Change on indirect human exposure to pathogens and chemicals from agriculture. Environmental Health Perspectives, Vol.11 (No.4). pp. 508-514. doi:10.1289/ehp.0800084

Great Britain. Meat and Livestock Commission (MLC)

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Great Britain. Ministry of Defence (MoD)

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

India. University Grants Commission

Reddy, T. V. K., Mahmood, Shaik, Laskaris, Paris, Reddy, Y. Harish Kumar, Wellington, E. M. H. and Idris, M. M. (2011) Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil. International Journal of Systematic and Evolutionary Microbiology, Volume 61 (Number 1). pp. 76-80. doi:10.1099/ijs.0.020446-0

Innovation Medicine Initiatives (IMI)

(2015) The global threat of antimicrobial resistance : science for intervention. New Microbes and New Infections, 6 . pp. 22-29. doi:10.1016/j.nmni.2015.02.007

Medical Research Council (Great Britain) (MRC)

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

National Institutes of Health (U.S.) (NIH)

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

Natural Environment Research Council (Great Britain) (NERC)

King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811

Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

Muzafar, Mohd, Green, Laura E., Calvo-Bado, Leo A., Tichauer, Esther, King, Hayley C., James, Philip and Wellington, E. M. H. (2015) Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils. Anaerobe, 38 . pp. 81-87. doi:10.1016/j.anaerobe.2015.12.010

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3–4). pp. 321-327. doi:10.1016/j.vetmic.2015.01.022

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Natural Environment Research Council (Great Britain) (NERC)

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403

Natural Sciences and Engineering Research Council of Canada (NSERC)

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Nederlandse Organisatie voor Wetenschappelijk Onderzoek [Netherlands Organisation for Scientific Research] (NWO)

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Norges forskningsråd [Norwegian Research Council]

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10

Norges forskningsråd [Research Council of Norway] (NF)

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10

Ontario Genomics Institute (Canada)

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Österreichische Forschungsförderungsgesellschaft [Austrian Research Promotion Agency]

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

Pfizer Animal Health

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Rijksuniversiteit te Groningen [University of Groningen]

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Seventh Framework Programme (European Commission) (FP7)

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130

Dealtry, Simone, Ding, Guo-Chun, Weichelt, Viola, Dunon, Vincent, Schlüter, Andreas, Martini, María Carla, Papa, María Florencia Del, Lagares, Antonio, Amos, Gregory C. A., Wellington, E. M. H., Gaze, William H., Sipkema, Detmer, Sjöling, Sara, Springael, Dirk, Heuer, Holger, Elsas, J. D. van, Thomas, Christopher M. and Smalla, Kornelia (2014) Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats. PLoS One, Volume 9 (Number 2). Article number e89922. doi:10.1371/journal.pone.0089922

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. doi:10.1371/journal.pone.0035756

Standortagentur Tirol

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

Styria (Austria)

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

SysMO

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

University of Warwick

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524

Gaze, William H., Morgan, Gina, Zhang, Lihong and Wellington, E. M. H. (2011) Mimivirus-like particles in Acanthamoebae from sewage sludge. Emerging Infectious Diseases , Volume 17 (Number 6). pp. 1127-1129. doi:10.3201/eid1706.101282

University of Warwick Vice Chancellor Scholarship

Muzafar, Mohd, Calvo-Bado, Leo A., Green, Laura E., Smith, Edward M., Russell, Claire L., Grogono-Thomas, Rosemary and Wellington, E. M. H. (2015) The role of the environment in transmission of Dichelobacter nodosus between ewes and their lambs. Veterinary Microbiology, 179 (1-2). pp. 53-59. doi:10.1016/j.vetmic.2015.04.010

University of Waterloo

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Wyeth Pharmaceutical Company

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Zentrum für Innovation und Technologie (Vienna) (ZIT)

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15