2016

Cruz, João C. S., Maffioli, Sonia I., Bernasconi, Alice, Brunati, Cristina, Gaspari, Eleonora, Sosio, Margherita, Wellington, E. M. H. and Donadio, Stefano. (2016) Allocyclinones, hyperchlorinated angucyclinones from Actinoallomurus. The Journal of Antibiotics . ISSN 0021-8820

Lidbury, Ian, Murphy, Andrew, Scanlan, David J., Bending, Gary D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Amanda, Hammond, John P. and Wellington, E. M. H.. (2016) Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology . ISSN 1462-2912 (In Press)

Gudeta, Dereje Dadi, Bortolaia, Valeria, Amos, Gregory C. A., Wellington, E. M. H., Brandt, Kristian K., Poirel, Laurent, Nielsen, Jesper Boye, Westh, Henrik and Guardabassi, Luca. (2016) The soil microbiota harbors a diversity of Carbapenem-Hydrolyzing ß-Lactamases of potential clinical relevance. Antimicrobial Agents and Chemotherapy, 60 (1). pp. 151-160. ISSN 0066-4804

2015

Muzafar, Mohd, Green, Laura E., Calvo-Bado, Leo A., Tichauer, Esther, King, Hayley C., James, Philip and Wellington, E. M. H.. (2015) Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils. Anaerobe, 38 . pp. 81-87. ISSN 10759964

Cruz, João C. S., Iorio, Marianna, Monciardini, Paolo, Simone, Matteo, Brunati, Cristina, Gaspari, Eleonora, Maffioli, Sonia I., Wellington, E. M. H., Sosio, Margherita and Donadio, Stefano. (2015) Brominated variant of the Lantibiotic NAI-107 with enhanced antibacterial potency. Journal of Natural Products, 78 (11). pp. 2642-2647. ISSN 0163-3864

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H.. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. ISSN 1932-6203

Muzafar, Mohd, Calvo-Bado, Leo A., Green, Laura E., Smith, Edward M., Russell, Claire L., Grogono-Thomas, Rosemary and Wellington, E. M. H.. (2015) The role of the environment in transmission of Dichelobacter nodosus between ewes and their lambs. Veterinary Microbiology, 179 (1-2). pp. 53-59. ISSN 0378-1135

Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Armengaud, Jean, Wellington, E. M. H. and Jones, Alexandra M.. (2015) Defining a pipeline for metaproteomic analyses. Springer Protocols Handbooks . ISSN 1949-2448

King, Hayley C., Murphy, Andrew, James, Phillip, Travis, Emma Rachel, Porter, David, Hung, Yu-Jiun, Sawyer, Jason, Cork, Jennifer, Delahay, Richard J., Gaze, William H., Courtenay, Orin and Wellington, E. M. H.. (2015) The variability and seasonality of the environmental reservoir of Mycobacterium bovis shed by wild European badgers. Scientific Reports, 5 . pp. 1-7. 12318. ISSN 2045-2322

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele. (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. ISSN 0099-2240

King, Hayley C., Murphy, Andrew, James, Phillip, Travis, Emma Rachel, Porter, David, Sawyer, Jason, Cork, Jennifer, Delahay, Richard J., Gaze, William H., Courtenay, Orin and Wellington, E. M. H.. (2015) Performance of a non-invasive test for detecting mycobacterium bovis shedding in European badger (meles meles) populations. Journal of Clinical Microbiology, 53 . pp. 2316-2323. ISSN 0095-1137

. (2015) The global threat of antimicrobial resistance : science for intervention. New Microbes and New Infections, 6 . pp. 22-29. ISSN 2052-2975

Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H.. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3–4). pp. 321-327. ISSN 0378-1135

Amos, Gregory C. A., Carter, Abigail, Hawkey, Peter M., Gaze, William H. and Wellington, E. M. H. (2015) The hidden resistome of retail chicken meat. Journal of Global Antimicrobial Resistance, 3 (1). pp. 44-46. ISSN 2213-7165

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A., Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H.. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. ISSN 1751-7362

2014

Smith, Edward M., Green, Olivia, Calvo-Bado, Leo A., Witcomb, Luci, Grogono-Thomas, Rosemary, Russell, Claire L., Brown, J. C., Medley, Graham, Kilbride, A. L., Wellington, E. M. H. and Green, Laura E.. (2014) Dynamics and impact of footrot and climate on hoof horn length in 50 ewes from one farm over a period of 10 months. The Veterinary Journal, Volume 201 (Number 3). pp. 295-301. ISSN 1090-0233

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H.. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. ISSN 0378-1135

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H.. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. ISSN 1751-7362

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H.. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. ISSN 0167-5877

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H.. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. ISSN 0305-7453

Mohamad, A. J., Zhu, Xinyao, Tian, Y. (Yuan), Wellington, E. M. H., Pfleging, W. and Liu, X.. (2014) Investigating the effect of surface topography on hydrophobicity and bacterial attachment on polystyrene. Surface Topography : Metrology and Properties, 2 (2). 024003. ISSN 2051-672X

Russell, Claire L., Smith, Edward M., Calvo-Bado, Leo A., Green, Laura E., Wellington, E. M. H., Medley, Graham, Moore, Lynda J. and Grogono-Thomas, Rosemary. (2014) Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements. Infection, Genetics and Evolution , Volume 22 (Number 1). pp. 273-279. ISSN 1567-1348

Dealtry, Simone, Ding, Guo-Chun, Weichelt, Viola, Dunon, Vincent, Schlüter, Andreas, Martini, María Carla, Papa, María Florencia Del, Lagares, Antonio, Amos, Gregory C. A., Wellington, E. M. H., Gaze, William H., Sipkema, Detmer, Sjöling, Sara, Springael, Dirk, Heuer, Holger, Elsas, J. D. van, Thomas, Christopher M. and Smalla, Kornelia. (2014) Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats. PLoS One, Volume 9 (Number 2). Article number e89922. ISSN 1932-6203

Roug, Annette, Geoghegan, Claire, Wellington, E. M. H., Miller, Woutrina A., Travis, Emma Rachel, Porter, David, Cooper, David, Clifford, Deana L., Mazet, Jonna A. K. and Parsons, Sven (2014) Utility of a fecal real-time PCR protocol for detection of Mycobacterium bovisInfection in African buffalo (syncerus caffer). Journal of Wildlife Diseases , Volume 50 (Number 1). pp. 140-142. ISSN 0090-3558

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine. (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. ISSN 2314-6133

2013

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H.. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. ISSN 1932-6203

Gaze, William H., Krone, Stephen M., Larsson, D.G. Joakim, Li, Xian-Zhi, Robinson, Joseph A., Simonet, Pascal, Smalla, Kornelia, Timinouni, Mohammed, Topp, Ed, Wellington, E. M. H., Wright, Gerard D. and Zhu, Yong-Guan. (2013) Influence of humans on evolution and mobilization of environmental antibiotic resistome. Emerging Infectious Diseases , Volume 19 (Number 7). ISSN 1080-6059

. (2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. ISSN 1944-3277

Wellington, E. M. H., Boxall, Alistair B. A., Cross, Paul, Feil, Edward J., Gaze, William H., Hawkey, P. M., Johnson-Rollings, Ashley S., Jones, Davey L., Lee, Nick, Otten, Wilfred, Thomas, Christopher M. and Williams, A. Prysor. (2013) The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria. The Lancet Infectious Diseases, Vol.13 (No.2). pp. 155-165. ISSN 1473-3099

2012

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H.. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. ISSN 1932-6203

Thomas, L., Hodgson, D. A., Wentzel, A., Nieselt, K., Ellingsen, T. E., Moore, Jonathan D., Morrissey, E. R., Legaie, Roxane, Wohlleben, W., Rodriguez-Garcia, A., Martin, J. F., Burroughs, Nigel John, Wellington, E. M. H. and Smith, M. C. M.. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Molecular & Cellular Proteomics, Vol.11 (No.2). M111.013797. ISSN 1535-9476

Edwards, Lindsey A., O'Neill, Colette, Furman, Mark A., Hicks, Susan, Torrente, Franco, Pérez-Machado, Miguel, Wellington, E. M. H., Phillips, Alan D. and Murch, Simon. (2012) Enterotoxin-producing staphylococci cause intestinal inflammation by a combination of direct epithelial cytopathy and superantigen-mediated T-cell activation. Inflammatory Bowel Diseases, Vol.18 (No.4). pp. 624-640. ISSN 1078-0998

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H.. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. ISSN 1664-302X

Martín, Juan F. , Santos-Beneit, Fernando, Rodríguez-García, Antonio , Sola-Landa, Alberto , Smith, Margaret C. M., Ellingsen, Trond E., Nieselt, Kay , Burroughs, Nigel John and Wellington, E. M. H.. (2012) Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor. Applied Microbiology and Biotechnology, Vol.95 (No.1). pp. 61-75. ISSN 0175-7598

2011

Tsibidis, George D., Burroughs, Nigel John, Gaze, William H. and Wellington, E. M. H.. (2011) Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images. Micron, Vol.42 (No.8). pp. 911-920. ISSN 0968-4328

Calvo-Bado, Leo A., Oakley, Brian B., Dowd, Scot E., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Bateman, Vicky, Gaze, William H., Witcomb, Luci, Grogono-Thomas, Rosemary, Kaler, Jasmeet, Russell, Claire L. and Wellington, E. M. H.. (2011) Ovine pedomics : the first study of the ovine foot 16S rRNA-based microbiome. ISME Journal, Vol.5 (No.9). pp. 1426-1437. ISSN 1751-7362

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H.. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. ISSN 1932-6203

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H.. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. ISSN 0099-2240

Gaze, William H., Zhang, Lihong, Abdouslam, Nouradin A., Hawkey, P. M., Calvo-Bado, Leo A., Royle, Jeremy, Brown, Helen, Davis, Susan, Kay, Paul, Boxall, Alistair B. A. and Wellington, E. M. H.. (2011) Impacts of anthropogenic activity on the ecology of class 1 integrons and integron-associated genes in the environment. ISME Journal, Vol.5 (No.8). pp. 1253-1261. ISSN 1751-7362

Anukool, Usanee, O’Neill, Colette E., Butr-Indr, Bordin, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H.. (2011) Meticillin-resistant Staphylococcus aureus in pigs from Thailand. International Journal of Antimicrobial Agents, Volume 38 (Number 1). pp. 86-87. ISSN 0924-8579

Gaze, William H., Morgan, Gina, Zhang, Lihong and Wellington, E. M. H.. (2011) Mimivirus-like particles in Acanthamoebae from sewage sludge. Emerging Infectious Diseases , Volume 17 (Number 6). pp. 1127-1129. ISSN 1080-6059

Reddy, T. V. K., Mahmood, Shaik, Laskaris, Paris, Reddy, Y. Harish Kumar, Wellington, E. M. H. and Idris, M. M.. (2011) Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil. International Journal of Systematic and Evolutionary Microbiology, Volume 61 (Number 1). pp. 76-80. ISSN 1466-5026

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H.. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. ISSN 1932-6203

2010

Kaler, Jasmeet, Medley, Graham, Grogono-Thomas, Rosemary, Wellington, E. M. H., Calvo-Bado, Leo A., Wassink, Geert J., King, Elisabeth M., Moore, L. J., Russell, Claire L. and Green, Laura E.. (2010) Factors associated with changes of state of foot conformation and lameness in a flock of sheep. Preventive Veterinary Medicine, Vol.97 (No.3/4). pp. 237-244. ISSN 0167-5877

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary. (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. ISSN 0378-1135

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Corrigendum to "Coevolution of antibiotic production and counter-resistance in soil bacteria". Environmental Microbiology, Vol.12 (No.7). p. 2048. ISSN 1462-2912

(2010) Impacts of climate change on indirect human exposure to pathogens and chemicals from agriculture. Ciencia & Saude Coletiva, Vol.15 (No.3). pp. 743-756. ISSN 1413-8123

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. ISSN 1471-2164

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H.. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. ISSN 1462-2912

. (2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). ISSN 1471-2164

2009

. (2009) Impacts of Climate Change on indirect human exposure to pathogens and chemicals from agriculture. Environmental Health Perspectives, Vol.11 (No.4). pp. 508-514. ISSN 0091-6765

Rossello, M. R., Griffiths, Nathan, Kalvala, Sara, Wellington, E. M. H. and Gaze, William H. (2009) Networking strategies in streptomyces coelicolor. In: 2nd International Conference on Bioinformatics and Systems Biology (BSB 2009), Leipzig, Germany, 23-25 March 2009 (Unpublished)

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H.. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. ISSN 0066-4804

Ul-Hassan, Atiya and Wellington, E. M. H. (2009) Actinobacteria. In: Encyclopedia of Microbiology. Elsevier, pp. 25-44. ISBN 978-0-12-373944-5

2008

Courtenay, Orin and Wellington, E. M. H.. (2008) Mycobacterium bovis in the environment : towards our understanding of its biology. Cattle Practice, Vol.16 (Part 2). pp. 122-126. ISSN 0969-1251

Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Maserti, Bianca Elena, Leo, A. Calvo-Bado, Ceccanti, Brunello and Wellington, E. M. H.. (2008) Comparison of extraction methods for recovery of extracellular beta-glucosidase in two different forest soils. Soil Biology & Biochemistry, Vol.40 (No.9). pp. 2156-2161. ISSN 0038-0717

Gaze, William H., O'Neill, Colette, Wellington, E. M. H. and Hawkey, P. M.. (2008) Antibiotic resistance in the environment, with particular reference to MRSA. Advances in Applied Microbiology, Vol.63 . pp. 249-280. ISSN 0065-2164

2007

Courtenay, Orin, Reilly, L. A., Keeling, Matthew James, Sweeney, F. P., Wellington, E. M. H., Macdonald, David W., Delahay, Richard J., Wilson, G. J. and Cheeseman, C. L.. (2007) Performance of an environmental test to detect Mycobacterium bovis infection in badger social groups. Veterinary Record, The, Vol.161 . pp. 817-818. ISSN 0042-4900

Sweeney, F. P., Courtenay, Orin, Hibberd, V., Hewinson, R. G., Reilly, L. A., Gaze, William H. and Wellington, E. M. H.. (2007) Environmental monitoring of Mycobacterium bovis in badger feces and badger sett soil by real-time PCR, as confirmed by immunofluorescence, immunocapture, and cultivation. Applied and Environmental Microbiology, Vol.73 (No.22). pp. 7471-7473. ISSN 0099-2240

Edwards, L., Hicks, S., Furman, M., O'Neill, C., Wellington, E. M. H., Torrente, F., Fitzhenry, R., Phillips, A. and Murch, Simon (2007) Seg/I producing Staphylococcus aureus induces intestinal epithelial cytopathy independent of T cell responses. In: European Society for Paediatric Gastroenterology, Hepatology, and Nutrition Annual Meeting , Barcelona, Spain, May 9-12, 2007. Published in: Journal of Pediatric Gastroenterology and Nutrition, Vol.44 (Suppl.1). p. 118.

2006

Sweeney, F. P., Courtenay, Orin, Ul-Hassan, Atiya, Hibberd, V., Reilly, L. A. and Wellington, E. M. H.. (2006) Immunomagnetic recovery of Mycobacterium bovis from naturally infected environmental samples. LETTERS IN APPLIED MICROBIOLOGY, 43 (4). pp. 364-369. ISSN 0266-8254

Courtenay, Orin, Reilly, L. A., Sweeney, F. P., Hibberd, V., Bryan, S., Ul-Hassan, Atiya, Newman, C., Macdonald, D. W., Delahay, R. J., Wilson, G. J. and Wellington, E. M. H.. (2006) Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis? Biology Letters, Vol.2 (No.3). pp. 460-462. ISSN 1744-9561

Krsek, Martin and Wellington, E. M. H.. (2006) Studies of microbial community structure and function below ground in a managed upland grassland site at Sourhope Research Station. Applied Soil Ecology, Volume 33 (Number 2). pp. 127-136. ISSN 0929-1393