2022

Muscatt, George, Hilton, Sally, Raguideau, Sébastien, Teakle, Graham R., Lidbury, Ian, Wellington, Elizabeth M. H., Quince, Christopher, Millard, Andrew D., Bending, Gary D. and Jameson, Eleanor (2022) Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere. Microbiome, 10 (1). 181. doi:10.1186/s40168-022-01371-3

Lidbury, Ian, Raguideau, Sébastien, Borsetto, Chiara, Murphy, Andrew R. J., Bottrill, Andrew R., Liu, Senlin, Stark, Richard Jan, Fraser, Tandra, Goodall, Andrew, Jones, Alexandra M., Bending, Gary D., Tibbetts, Mark, Hammond, John P., Quince, Chris, Scanlan, David J. , Pandhal, Jagroop and Wellington, Elizabeth M. H. (2022) Stimulation of distinct rhizosphere bacteria drives phosphorus and nitrogen mineralization in oilseed rape under field conditions. mSystems, 7 (4). doi:10.1128/msystems.00025-22

Zadjelovic, Vinko, Erni-Cassola, Gabriel, Obrador-Viel, Theo, Lester, Daniel, Eley, Yvette, Gibson, Matthew I., Dorador, Cristina, Golyshin, Peter N., Black, Stuart, Wellington, Elizabeth M. H. and Christie-Oleza, Joseph A. (2022) A mechanistic understanding of polyethylene biodegradation by the marine bacterium Alcanivorax. Journal of Hazardous Materials, 436 . 129278. doi:10.1016/j.jhazmat.2022.129278

Murphy, Andrew, Scanlan, David J. , Chen, Yin, Bending, G. D., Hammond, John P., Wellington, Elizabeth M. H. and Lidbury, Ian (2022) 2-Aminoethylphosphonate utilization in pseudomonas putida BIRD-1 is controlled by multiple master regulators. Environmental Microbiology, 24 (4). pp. 1902-1917. doi:10.1111/1462-2920.15959

Waschulin, Valentin, Borsetto, Chiara, James, Robert, Newsham, Kevin K., Donadio, Stefano, Corre, Christophe and Wellington, Elizabeth M. H. (2022) Biosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing. The ISME Journal, 16 . pp. 101-111. doi:10.1038/s41396-021-01052-3

2021

Amos, Gregory C. A., Sergaki, Chrysi, Logan, Alastair, Iriarte, Rolland, Bannaga, Ayman, Chandrapalan, Subashini, Wellington, Elizabeth M. H., Rijpkema, Sjoerd and Arasaradnam, Ramesh P. (2021) Exploring how microbiome signatures change across inflammatory bowel disease conditions and disease locations. Scientific Reports, 11 (1). 18699. doi:10.1038/s41598-021-96942-z

Rangama, Severine, Lidbury, Ian, Holden, Jennifer, Borsetto, Chiara, Murphy, Andrew, Hawkey, Peter and Wellington, E. M. H. (2021) Mechanisms involved in the active secretion of CTX-M-15 β-lactamase by pathogenic Escherichia coli ST131. Antimicrobial Agents and Chemotherapy, 65 (10). e0066321. doi:10.1128/AAC.00663-21

Borsetto, Chiara, Raguideau, Sébastien, Travis, Emma Rachel, Kim, Dae-Wi, Lee, Do-Hoon, Bottrill, Andrew R., Stark, Richard Jan, Song, Lijiang, Cha, Chang-Jun, Pearson, Jonathan M., Quince, Christopher, Singer, Andrew C. and Wellington, Elizabeth M. H. (2021) Impact of sulfamethoxazole on a riverine microbiome. Water Research, 201 . 117382. doi:10.1016/j.watres.2021.117382

Murphy, Andrew, Scanlan, David J. , Chen, Yin, Adams, Nathan B. P., Cadman, William A., Bottrill, Andrew R., Bending, G. D., Hammond, John P., Hitchcock, Andrew, Wellington, Elizabeth M. H. and Lidbury, Ian D. E. A. (2021) Transporter characterisation reveals aminoethylphosphonate mineralisation as a key step in the marine phosphorus redox cycle. Nature Communications, 12 (1). 4554. doi:10.1038/s41467-021-24646-z

Hillman, Evette B. M, Rijpkema, Sjoerd, Carson, Danielle, Arasaradnam, Ramesh P., Wellington, Elizabeth M. H. and Amos, Gregory C. A. (2021) Manipulating the microbiome : an alternative treatment for bile acid diarrhoea. Microbiology Research, 12 (2). pp. 335-353. doi:10.3390/microbiolres12020023

Lidbury, Ian, Borsetto, Chiara, Murphy, Andrew, Bottrill, Andrew R., Jones, Alexandra M., Bending, G. D., Hammond, John P., Chen, Yin, Wellington, Elizabeth M. H. and Scanlan, David J. (2021) Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation. ISME Journal, 15 . pp. 1040-1055. doi:10.1038/s41396-020-00829-2

2020

Murphy, Andrew, Travis, Emma Rachel, Hibberd, Victoria, Porter, David and Wellington, Elizabeth M. H. (2020) Evaluation of a fecal shedding test to detect badger social groups infected with Mycobacterium bovis. Journal of Clinical Microbiology, 59 (1). e01226-20. doi:10.1128/JCM.01226-20

Sheridan, Paul O., Raguideau, Sébastien, Quince, Christopher, Holden, Jennifer, Thames Consortium, , Zhang, Lihong, Gubry-Rangin, Cécile and Williams, Tom A. (2020) Gene duplication drives genome expansion in a major lineage of Thaumarchaeota. Nature Communications, 11 (1). 5494. doi:10.1038/s41467-020-19132-x

Leungtongkam, Udomluk, Thummeepak, Rapee, Kitti, Thawatchai, Tasanapak, Kannipa, Wongwigkarn, Jintana, Styles, Kathryn, Wellington, Elizabeth M. H., Millard, Andrew D., Sagona, Antonia P. and Sitthisak, Sutthirat (2020) Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii. Scientific Reports, 10 . 16154. doi:10.1038/s41598-020-73123-y

Styles, Kathryn, Thummeepak, Rapee, Leungtongkam, Udomluk, Smith, Sophie, Christie, Gabrielle S., Millard, Andrew D., Moat, John, Dowson, Christopher G., Wellington, Elizabeth M. H., Sitthisak, Sutthirat and Sagona, Antonia P. (2020) Investigating bacteriophages targeting the opportunistic pathogen Acinetobacter baumannii. Antibiotics, 9 (4). 200. doi:10.3390/antibiotics9040200

Lee, Kihyun, Kim, Dae-Wi, Lee, Do-Hoon, Kim, Yong-Seok, Bu, Ji-Hye, Cha, Ju-Hee, Thawng, Cung Nawl, Hwang, Eun-Mi, Seong, Hoon Je, Sul, Woo Jun, Wellington, Elizabeth M. H., Quince, Christopher and Cha, Chang-Jun (2020) Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance. Microbiome, 8 (1). 2. doi:10.1186/s40168-019-0774-7

Alam, Mohammad T., Amos, Gregory C. A., Murphy, Andrew, Murch, Simon, Wellington, E. M. H. and Arasaradnam, Ramesh P. (2020) Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels. Gut Pathogens, 12 . 2020. doi:10.1186/s13099-019-0341-6

2019

Zhang, Lihong, Calvo-Bado, Leo A., Murray, A. K., Amos, Gregory C. A., Hawkey, P. M., Wellington, E. M. H. and Gaze, William H. (2019) Novel clinically relevant antibiotic resistance genes associated with sewage sludge and industrial waste streams revealed by functional metagenomic screening. Environment International, 132 . p. 105120. doi:10.1016/j.envint.2019.105120

Simcox, Lee J., Pereira, Rui P. A., Wellington, E. M. H. and Macpherson, Julie V. (2019) Boron doped diamond as a low biofouling material in aquatic environments : assessment of pseudomonas aeruginosa biofilm formation. ACS Applied Materials and Interfaces, 11 . 28. doi:10.1021/acsami.9b07245

Kim, Dae-Wi, Thawng, Cung Nawl, Lee, Kihyun, Wellington, E. M. H. and Cha, Chang-Jun (2019) A novel sulfonamide resistance mechanism by two-component flavin-dependent monooxygenase system in sulfonamide-degrading actinobacteria. Environment International, 127 . pp. 206-215. doi:10.1016/j.envint.2019.03.046

Borsetto, Chiara, Amos, Gregory C. A., da Rocha, Ulisses Nunes, Mitchell, Alex L., Finn, Robert D., Laidi, Rabah Forar, Vallin, Carlos, Pearce, David A., Newsham, Kevin K. and Wellington, E. M. H. (2019) Microbial community drivers of PK/NRP gene diversity in selected global soils. Microbiome, 7 (1). 78. doi:10.1186/s40168-019-0692-8

2018

(2018) Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance. Environment International, 117 . pp. 132-138. doi:10.1016/j.envint.2018.04.041

Lee, Learn-Han, Chan, Kok-Gan, Stach, Jem, Wellington, Elizabeth M. H. and Goh, Bey-Hing (2018) Editorial: The Search for Biological Active Agent(s) From Actinobacteria. Frontiers in Microbiology, 9 . 824. doi:10.3389/fmicb.2018.00824

Amos, Gregory C. A., Ploumakis, Semina, Zhang, Lihong, Hawkey, Peter M., Gaze, William H. and Wellington, E. M. H. (2018) The widespread dissemination of integrons throughout bacterial communities in a riverine system. The ISME Journal, 12 (3). pp. 681-691. doi:10.1038/s41396-017-0030-8

Amin, Dina, Abolmaaty, Assem , Tolba, Sahar , Abdallah, Nagwa and Wellington, E. M. H. (2018) Phylogenic characteristics of a unique antagonistic micromonospora Sp. Rc5 to S. aureus isolated from Sinai Desert of Egypt. Annual Research & Review in Biology, 22 (2). pp. 1-15. doi:10.9734/ARRB/2018/38318

2017

Konstantopoulou, Marina, Slator, Paddy J., Taylor, Charles R., Wellington, E. M. H., Allison, Gordon, Harper, Andrea L., Bancroft, Ian and Bugg, Timothy D. H. (2017) Variation in susceptibility to microbial lignin oxidation in a set of wheat straw cultivars : influence of genetic, seasonal and environmental factors. Nordic Pulp and Paper Research Journal, 32 (4). pp. 493-507.

Kaur, Amandeep, Hernandez Fernaud, Juan Ramon, Aguilo-Ferretjans, Maria del Mar, Wellington, E. M. H. and Christie-Oleza, Joseph Alexander (2017) 100 days of marine Synechococcus – Ruegeria pomeroyi interaction, a detailed analysis of the exoproteome. Environmental Microbiology, 20 (2). pp. 785-799. doi:10.1111/1462-2920.14012

Lidbury, Ian, Fraser, Tandra, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbett, Mark, Hammond, John P. and Wellington, E. M. H. (2017) The ‘known’ genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils. MicrobiologyOpen . e00474. doi:10.1002/mbo3.474

Lidbury, Ian, Murphy, Andrew, Fraser, Tandra D., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Andrew, Tibbetts, Mark, Hammond, John P., Scanlan, David J. and Wellington, E. M. H. (2017) Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation. Scientific Reports, 7 (1). 2179. doi:10.1038/s41598-017-02327-6

King, Hayley C., Khera-Butler , Tanya, James, Phillip, Oakley, Brian B., Erenso, Girume, Aseffa, Abraham, Knight, Robert, Wellington, E. M. H. and Courtenay, Orin (2017) Environmental reservoirs of pathogenic mycobacteria across the Ethiopian biogeographical landscape. PLoS One, 12 (3). e0173811. doi:10.1371/journal.pone.0173811

2016

Lehmann, Katja, Bell, Thomas, Bowes, Michael J., Amos, Gregory C. A., Gaze, William H., Wellington, E. M. H. and Singer, Andrew C. (2016) Trace levels of sewage effluent are sufficient to increase class 1 integron prevalence in freshwater biofilms without changing the core community. Water Research, 106 . pp. 163-170. doi:10.1016/j.watres.2016.09.035

Lidbury, Ian, Murphy, Andrew, Scanlan, David J., Bending, G. D., Jones, Alexandra M., Moore, Jonathan D., Goodall, Amanda, Hammond, John P. and Wellington, E. M. H. (2016) Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology, 18 (10). pp. 3535-3549. doi:10.1111/1462-2920.13390

Cleary, David W., Bishop, Alistair H., Zhang, Lihong, Topp, Edward, Wellington, E. M. H., Gaze, William H. and Smalla, Kornelia (2016) Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons. FEMS Microbiology Ecology, 92 (10). fiw159. doi:10.1093/femsec/fiw159

Salimraj, Ramya, Zhang, Lihong, Hinchliffe, Philip, Wellington, E. M. H., Brem, Jürgen, Schofield, Christopher J., Gaze, William H. and Spencer, James (2016) Structural and biochemical characterization of Rm3, a subclass B3 Metallo-β-Lactamase identified from a functional metagenomic study. Antimicrobial Agents and Chemotherapy, 60 (10). pp. 5828-5840. doi:10.1128/AAC.00750-16

Cruz, João C. S., Maffioli, Sonia I., Bernasconi, Alice, Brunati, Cristina, Gaspari, Eleonora, Sosio, Margherita, Wellington, E. M. H. and Donadio, Stefano (2016) Allocyclinones, hyperchlorinated angucyclinones from Actinoallomurus. The Journal of Antibiotics . doi:10.1038/ja.2016.62

Gudeta, Dereje Dadi, Bortolaia, Valeria, Amos, Gregory C. A., Wellington, E. M. H., Brandt, Kristian K., Poirel, Laurent, Nielsen, Jesper Boye, Westh, Henrik and Guardabassi, Luca (2016) The soil microbiota harbors a diversity of Carbapenem-Hydrolyzing ß-Lactamases of potential clinical relevance. Antimicrobial Agents and Chemotherapy, 60 (1). pp. 151-160. doi:10.1128/AAC.01424-15

2015

Muzafar, Mohd, Green, Laura E., Calvo-Bado, Leo A., Tichauer, Esther, King, Hayley C., James, Philip and Wellington, E. M. H. (2015) Survival of the ovine footrot pathogen Dichelobacter nodosus in different soils. Anaerobe, 38 . pp. 81-87. doi:10.1016/j.anaerobe.2015.12.010

Cruz, João C. S., Iorio, Marianna, Monciardini, Paolo, Simone, Matteo, Brunati, Cristina, Gaspari, Eleonora, Maffioli, Sonia I., Wellington, E. M. H., Sosio, Margherita and Donadio, Stefano (2015) Brominated variant of the Lantibiotic NAI-107 with enhanced antibacterial potency. Journal of Natural Products, 78 (11). pp. 2642-2647. doi:10.1021/acs.jnatprod.5b00576

Amos, Gregory C. A., Borsetto, Chiara, Laskaris, Paris, Krsek, Martin, Berry, Andrew E., Newsham, Kevin K., Calvo-Bado, Leo A., Pearce, David A., Vallin, Carlos and Wellington, E. M. H. (2015) Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils. PLoS One, 10 (9). pp. 1-15. e0138327. doi:10.1371/journal.pone.0138327

Muzafar, Mohd, Calvo-Bado, Leo A., Green, Laura E., Smith, Edward M., Russell, Claire L., Grogono-Thomas, Rosemary and Wellington, E. M. H. (2015) The role of the environment in transmission of Dichelobacter nodosus between ewes and their lambs. Veterinary Microbiology, 179 (1-2). pp. 53-59. doi:10.1016/j.vetmic.2015.04.010

Christie-Oleza, Joseph Alexander, Sousoni, Despoina, Armengaud, Jean, Wellington, E. M. H. and Jones, Alexandra M. (2015) Defining a pipeline for metaproteomic analyses. Springer Protocols Handbooks . doi:10.1007/8623_2015_130

King, Hayley C., Murphy, Andrew, James, Phillip, Travis, Emma Rachel, Porter, David, Hung, Yu-Jiun, Sawyer, Jason, Cork, Jennifer, Delahay, Richard J., Gaze, William H., Courtenay, Orin and Wellington, E. M. H. (2015) The variability and seasonality of the environmental reservoir of Mycobacterium bovis shed by wild European badgers. Scientific Reports, 5 . pp. 1-7. 12318. doi:10.1038/srep12318

Müller, Christina A., Oberauner-Wappis, Lisa, Peyman, Armin, Amos, Gregory C. A., Wellington, E. M. H. and Berg, Gabriele (2015) Mining for nonribosomal peptide synthetase and polyketide synthase genes revealed a high level of diversity in the sphagnum bog metagenome. Applied and Environmental Microbiology, 81 (15). pp. 5064-5072. doi:10.1128/AEM.00631-15

King, Hayley C., Murphy, Andrew, James, Phillip, Travis, Emma Rachel, Porter, David, Sawyer, Jason, Cork, Jennifer, Delahay, Richard J., Gaze, William H., Courtenay, Orin and Wellington, E. M. H. (2015) Performance of a non-invasive test for detecting mycobacterium bovis shedding in European badger (meles meles) populations. Journal of Clinical Microbiology, 53 . pp. 2316-2323. doi:10.1128/JCM.00762-15

(2015) The global threat of antimicrobial resistance : science for intervention. New Microbes and New Infections, 6 . pp. 22-29. doi:10.1016/j.nmni.2015.02.007

Witcomb, Luci, Green, Laura E., Calvo-Bado, Leo A., Russell, Claire, Smith, Edward M., Grogono-Thomas, Rose and Wellington, E. M. H. (2015) First study of pathogen load and localisation of ovine footrot using fluorescence in situ hybridisation (FISH). Veterinary Microbiology, Volume 176 (Number 3–4). pp. 321-327. doi:10.1016/j.vetmic.2015.01.022

Amos, Gregory C. A., Carter, Abigail, Hawkey, Peter M., Gaze, William H. and Wellington, E. M. H. (2015) The hidden resistome of retail chicken meat. Journal of Global Antimicrobial Resistance, 3 (1). pp. 44-46. doi:10.1016/j.jgar.2014.11.003

Amos, Gregory C. A., Gozzard, Emma , Carter, Charlotte E., Mead, A. (Andrew), Bowes, Mike J., Hawkey, P. M., Zhang, Lihong, Singer, Andrew C., Gaze, William H. and Wellington, E. M. H. (2015) Validated predictive modelling of the environmental resistome. The ISME Journal, 9 . p. 1467. doi:10.1038/ismej.2014.237

2014

Smith, Edward M., Green, Olivia, Calvo-Bado, Leo A., Witcomb, Luci, Grogono-Thomas, Rosemary, Russell, Claire L., Brown, J. C., Medley, Graham, Kilbride, A. L., Wellington, E. M. H. and Green, Laura E. (2014) Dynamics and impact of footrot and climate on hoof horn length in 50 ewes from one farm over a period of 10 months. The Veterinary Journal, Volume 201 (Number 3). pp. 295-301. doi:10.1016/j.tvjl.2014.05.021

Wellington, E. M. H. and Courtenay, Orin (2014) Comment : Badgers and Bovine TB – how can environmental microbiology help? Microbiology Today, 41 (3). p. 143.

Amos, Gregory C. A., Zhang, Lihong, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes. Veterinary Microbiology, Volume 171 (Number 3-4). pp. 441-447. doi:10.1016/j.vetmic.2014.02.017

Johnson-Rollings, Ashley S., Wright, H., Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Calvo-Bado, Leo A., Slade, Susan E., Plou, Carlos Vallin and Wellington, E. M. H. (2014) Exploring the functional soil-microbe interface and exoenzymes through soil metaexoproteomics. The ISME Journal, Volume 8 (Number 10). pp. 2148-2150. doi:10.1038/ismej.2014.130

Witcomb, Luci, Green, Laura E., Kaler, Jasmeet, Ul-Hassan, Atiya, Calvo-Bado, Leo A., Medley, Graham, Grogono-Thomas, Rosemary and Wellington, E. M. H. (2014) A longitudinal study of the role of Dichelobacter nodosus and Fusobacterium necrophorum load in initiation and severity of footrot in sheep. Preventive Veterinary Medicine, Volume 115 (Number 1-2). pp. 48-55. doi:10.1016/j.prevetmed.2014.03.004

Amos, Gregory C. A., Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2014) Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment. Journal of Antimicrobial Chemotherapy, Volume 69 (Number 7). pp. 1785-1791. doi:10.1093/jac/dku079

Mohamad, A. J., Zhu, Xinyao, Tian, Y. (Yuan), Wellington, E. M. H., Pfleging, W. and Liu, X. (2014) Investigating the effect of surface topography on hydrophobicity and bacterial attachment on polystyrene. Surface Topography : Metrology and Properties, 2 (2). 024003. doi:10.1088/2051-672X/2/2/024003

Russell, Claire L., Smith, Edward M., Calvo-Bado, Leo A., Green, Laura E., Wellington, E. M. H., Medley, Graham, Moore, Lynda J. and Grogono-Thomas, Rosemary (2014) Multiple locus VNTR analysis highlights that geographical clustering and distribution of Dichelobacter nodosus, the causal agent of footrot in sheep, correlates with inter-country movements. Infection, Genetics and Evolution , Volume 22 (Number 1). pp. 273-279. doi:10.1016/j.meegid.2013.05.026

Dealtry, Simone, Ding, Guo-Chun, Weichelt, Viola, Dunon, Vincent, Schlüter, Andreas, Martini, María Carla, Papa, María Florencia Del, Lagares, Antonio, Amos, Gregory C. A., Wellington, E. M. H., Gaze, William H., Sipkema, Detmer, Sjöling, Sara, Springael, Dirk, Heuer, Holger, Elsas, J. D. van, Thomas, Christopher M. and Smalla, Kornelia (2014) Cultivation-independent screening revealed hot spots of IncP-1, IncP-7 and IncP-9 plasmid occurrence in different environmental habitats. PLoS One, Volume 9 (Number 2). Article number e89922. doi:10.1371/journal.pone.0089922

Roug, Annette, Geoghegan, Claire, Wellington, E. M. H., Miller, Woutrina A., Travis, Emma Rachel, Porter, David, Cooper, David, Clifford, Deana L., Mazet, Jonna A. K. and Parsons, Sven (2014) Utility of a fecal real-time PCR protocol for detection of Mycobacterium bovisInfection in African buffalo (syncerus caffer). Journal of Wildlife Diseases , Volume 50 (Number 1). pp. 140-142. doi:10.7589/2013-07-159

Selama, Okba, Amos, Gregory C. A., Djenane, Zahia, Borsetto, Chiara, Laidi, Rabah Forar, Porter, David, Nateche, Farida, Wellington, E. M. H. and Hacène, Hocine (2014) Screening for genes coding for putative antitumor compounds, antimicrobial and enzymatic activities from haloalkalitolerant and haloalkaliphilic bacteria strains of Algerian Sahara soils. BioMed Research International, 2014 . Article number 317524. doi:10.1155/2014/317524

2013

Pontiroli, Alessandra, Khera, Tanya T., Oakley, Brian B., Mason, Sam, Dowd, Scot E., Travis, Emma Rachel, Erenso, Girum, Aseffa, Abraham, Courtenay, Orin and Wellington, E. M. H. (2013) Prospecting environmental mycobacteria: combined molecular approaches reveal unprecedented diversity. PLoS One, Volume 8 (Number 7). Article number e68648. doi:10.1371/journal.pone.0068648

Gaze, William H., Krone, Stephen M., Larsson, D.G. Joakim, Li, Xian-Zhi, Robinson, Joseph A., Simonet, Pascal, Smalla, Kornelia, Timinouni, Mohammed, Topp, Ed, Wellington, E. M. H., Wright, Gerard D. and Zhu, Yong-Guan (2013) Influence of humans on evolution and mobilization of environmental antibiotic resistome. Emerging Infectious Diseases , Volume 19 (Number 7). doi:10.3201/eid1907.120871

(2013) Meeting report : 1st international functional metagenomics workshop May 7–8, 2012, St. Jacobs, Ontario, Canada. Standards in Genomic Sciences, Volume 8 (Number 1). pp. 106-111. doi:10.4056/sigs.3406845

Wellington, E. M. H., Boxall, Alistair B. A., Cross, Paul, Feil, Edward J., Gaze, William H., Hawkey, P. M., Johnson-Rollings, Ashley S., Jones, Davey L., Lee, Nick, Otten, Wilfred, Thomas, Christopher M. and Williams, A. Prysor (2013) The role of the natural environment in the emergence of antibiotic resistance in Gram-negative bacteria. The Lancet Infectious Diseases, Vol.13 (No.2). pp. 155-165. doi:10.1016/S1473-3099(12)70317-1

2012

Laskaris, Paris, Sekine, Takuya and Wellington, E. M. H. (2012) Diversity analysis of Streptomycetes and associated phosphotranspherase genes in soil. PLoS ONE, Vol.7 (No.4). e35756. doi:10.1371/journal.pone.0035756

Thomas, L., Hodgson, D. A., Wentzel, A., Nieselt, K., Ellingsen, T. E., Moore, Jonathan D., Morrissey, Edward R., Legaie, Roxane, Wohlleben, W., Rodriguez-Garcia, A., Martin, J. F., Burroughs, Nigel John, Wellington, E. M. H. and Smith, M. C. M. (2012) Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture. Molecular & Cellular Proteomics, Vol.11 (No.2). M111.013797. doi:10.1074/mcp.M111.013797

Edwards, Lindsey A., O'Neill, Colette, Furman, Mark A., Hicks, Susan, Torrente, Franco, Pérez-Machado, Miguel, Wellington, E. M. H., Phillips, Alan D. and Murch, Simon (2012) Enterotoxin-producing staphylococci cause intestinal inflammation by a combination of direct epithelial cytopathy and superantigen-mediated T-cell activation. Inflammatory Bowel Diseases, Vol.18 (No.4). pp. 624-640. doi:10.1002/ibd.21852

Pearce, David A., Newsham, Kevin K., Thorne, Michael A. S., Calvo-Bado, Leo A., Krsek, Martin, Laskaris, Paris, Hodson, Andrew J. and Wellington, E. M. H. (2012) Metagenomic analysis of a southern maritime Antarctic soil. Frontiers in Microbiology, Volume 3 . Article number 403. doi:10.3389/fmicb.2012.00403

Martín, Juan F. , Santos-Beneit, Fernando, Rodríguez-García, Antonio , Sola-Landa, Alberto , Smith, Margaret C. M., Ellingsen, Trond E., Nieselt, Kay , Burroughs, Nigel John and Wellington, E. M. H. (2012) Transcriptomic studies of phosphate control of primary and secondary metabolism in Streptomyces coelicolor. Applied Microbiology and Biotechnology, Vol.95 (No.1). pp. 61-75. doi:10.1007/s00253-012-4129-6

2011

Tsibidis, George D., Burroughs, Nigel John, Gaze, William H. and Wellington, E. M. H. (2011) Semi-automated Acanthamoeba polyphaga detection and computation of Salmonella typhimurium concentration in spatio-temporal images. Micron, Vol.42 (No.8). pp. 911-920. doi:10.1016/j.micron.2011.06.010

Calvo-Bado, Leo A., Oakley, Brian B., Dowd, Scot E., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Bateman, Vicky, Gaze, William H., Witcomb, Luci, Grogono-Thomas, Rosemary, Kaler, Jasmeet, Russell, Claire L. and Wellington, E. M. H. (2011) Ovine pedomics : the first study of the ovine foot 16S rRNA-based microbiome. ISME Journal, Vol.5 (No.9). pp. 1426-1437. doi:10.1038/ismej.2011.25

Pontiroli, Alessandra, Travis, Emma Rachel, Sweeney, F. P., Porter, David, Gaze, William H., Mason, Sam, Hibberd, V., Holden, Jennifer, Courtenay, Orin and Wellington, E. M. H. (2011) Pathogen quantitation in complex matrices : a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition. PLoS One, Vol.6 (No.3). Article number e17916. doi:10.1371/journal.pone.0017916

Byrne-Bailey, K. G., Gaze, William H., Zhang, Lihong, Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2011) Integron prevalence and diversity in manured soil. Applied and Environmental Microbiology, Vol.77 (No.2). pp. 684-687. doi:10.1128/AEM.01425-10

Gaze, William H., Zhang, Lihong, Abdouslam, Nouradin A., Hawkey, P. M., Calvo-Bado, Leo A., Royle, Jeremy, Brown, Helen, Davis, Susan, Kay, Paul, Boxall, Alistair B. A. and Wellington, E. M. H. (2011) Impacts of anthropogenic activity on the ecology of class 1 integrons and integron-associated genes in the environment. ISME Journal, Vol.5 (No.8). pp. 1253-1261. doi:10.1038/ismej.2011.15

Anukool, Usanee, O’Neill, Colette E., Butr-Indr, Bordin, Hawkey, P. M., Gaze, William H. and Wellington, E. M. H. (2011) Meticillin-resistant Staphylococcus aureus in pigs from Thailand. International Journal of Antimicrobial Agents, Volume 38 (Number 1). pp. 86-87. doi:10.1016/j.ijantimicag.2011.02.018

Gaze, William H., Morgan, Gina, Zhang, Lihong and Wellington, E. M. H. (2011) Mimivirus-like particles in Acanthamoebae from sewage sludge. Emerging Infectious Diseases , Volume 17 (Number 6). pp. 1127-1129. doi:10.3201/eid1706.101282

Reddy, T. V. K., Mahmood, Shaik, Laskaris, Paris, Reddy, Y. Harish Kumar, Wellington, E. M. H. and Idris, M. M. (2011) Streptomyces hyderabadensis sp. nov., an actinomycete isolated from soil. International Journal of Systematic and Evolutionary Microbiology, Volume 61 (Number 1). pp. 76-80. doi:10.1099/ijs.0.020446-0

Travis, Emma Rachel, Gaze, William H., Pontiroli, Alessandra, Sweeney, Francis P., Porter, David, Mason, Sam, Keeling, Matthew James, Jones, Rebecca M., Sawyer, Jason, Aranaz, Alicia, Castellanos Rizaldos, Elena, Cork, Jennifer, Delahay, Richard J., Wilson, Gavin J., Hewinson, R. Glyn, Courtenay, Orin and Wellington, E. M. H. (2011) An inter-laboratory validation of a real time PCR assay to measure host excretion of bacterial pathogens, particularly of mycobacterium bovis. PLoS One, Vol.6 (No.11). e27369. doi:10.1371/journal.pone.0027369

2010

Kaler, Jasmeet, Medley, Graham, Grogono-Thomas, Rosemary, Wellington, E. M. H., Calvo-Bado, Leo A., Wassink, Geert J., King, Elisabeth M., Moore, L. J., Russell, Claire L. and Green, Laura E. (2010) Factors associated with changes of state of foot conformation and lameness in a flock of sheep. Preventive Veterinary Medicine, Vol.97 (No.3/4). pp. 237-244. doi:10.1016/j.prevetmed.2010.09.019

Calvo-Bado, Leo A., Green, Laura E., Medley, Graham, Ul-Hassan, Atiya, Buller, Nicky B., Kaler, Jasmeet, Russell, Claire L., Kennan, Ruth M., Rood, Julian I., Wellington, E. M. H. and Grogono-Thomas, Rosemary (2010) Detection and diversity of a putative novel heterogeneous polymorphic proline-glycine repeat (Pgr) protein in the footrot pathogen Dichelobacter nodosus. Veterinary Microbiology, Vol.147 (No.3-4). pp. 358-366. doi:10.1016/j.vetmic.2010.06.024

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Corrigendum to "Coevolution of antibiotic production and counter-resistance in soil bacteria". Environmental Microbiology, Vol.12 (No.7). p. 2048. doi:10.1111/j.1462-2920.2010.02262.x

(2010) Impacts of climate change on indirect human exposure to pathogens and chemicals from agriculture. Ciencia & Saude Coletiva, Vol.15 (No.3). pp. 743-756. doi:10.1590/S1413-81232010000300017

STREAM Consortium (Including: Alam, Mohammad T., Merlo, Maria E., Hodgson, D. A., Wellington, E. M. H., Takano, Eriko and Breitling, Rainer). (2010) Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (No.202). p. 202. doi:10.1186/1471-2164-11-202

Laskaris, Paris, Tolba, Sahar, Calvo-Bado, Leo A. and Wellington, E. M. H. (2010) Coevolution of antibiotic production and counter-resistance in soil bacteria. Environmental Microbiology, Vol.12 (No.3). pp. 783-796. doi:10.1111/j.1462-2920.2009.02125.x

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). doi:10.1186/1471-2164-11-10

(2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, 11 . p. 10. doi:DOI: 10.1186/1471-2164-11-10

2009

(2009) Impacts of Climate Change on indirect human exposure to pathogens and chemicals from agriculture. Environmental Health Perspectives, Vol.11 (No.4). pp. 508-514. doi:10.1289/ehp.0800084

Rossello, M. R., Griffiths, Nathan, Kalvala, Sara, Wellington, E. M. H. and Gaze, William H. (2009) Networking strategies in streptomyces coelicolor. In: 2nd International Conference on Bioinformatics and Systems Biology (BSB 2009), Leipzig, Germany, 23-25 March 2009 (Unpublished)

Byrne-Bailey, K. G., Gaze, William H., Kay, Paul, Boxall, Alistair B.A. , Hawkey, P. M. and Wellington, E. M. H. (2009) Prevalence of sulfonamide resistance genes in bacterial isolates from manured agricultural soils and pig slurry in the United Kingdom. Antimicrobial Agents and Chemotherapy, Vol.53 (No.2). pp. 696-702. doi:10.1128/AAC.00652-07

Ul-Hassan, Atiya and Wellington, E. M. H. (2009) Actinobacteria. In: Encyclopedia of Microbiology. Elsevier, pp. 25-44. ISBN 978-0-12-373944-5

2008

Courtenay, Orin and Wellington, E. M. H. (2008) Mycobacterium bovis in the environment : towards our understanding of its biology. Cattle Practice, Vol.16 (Part 2). pp. 122-126.

Masciandaro, Grazia, Macci, Cristina, Doni, Serena, Maserti, Bianca Elena, Leo, A. Calvo-Bado, Ceccanti, Brunello and Wellington, E. M. H. (2008) Comparison of extraction methods for recovery of extracellular beta-glucosidase in two different forest soils. Soil Biology & Biochemistry, Vol.40 (No.9). pp. 2156-2161. doi:10.1016/j.soilbio.2008.05.001

Gaze, William H., O'Neill, Colette, Wellington, E. M. H. and Hawkey, P. M. (2008) Antibiotic resistance in the environment, with particular reference to MRSA. Advances in Applied Microbiology, Vol.63 . pp. 249-280. doi:10.1016/S0065-2164(07)00007-X

2007

Courtenay, Orin, Reilly, L. A., Keeling, Matthew James, Sweeney, F. P., Wellington, E. M. H., Macdonald, David W., Delahay, Richard J., Wilson, G. J. and Cheeseman, C. L. (2007) Performance of an environmental test to detect Mycobacterium bovis infection in badger social groups. Veterinary Record, The, Vol.161 . pp. 817-818. doi:10.1136/vr.161.24.817

Sweeney, F. P., Courtenay, Orin, Hibberd, V., Hewinson, R. G., Reilly, L. A., Gaze, William H. and Wellington, E. M. H. (2007) Environmental monitoring of Mycobacterium bovis in badger feces and badger sett soil by real-time PCR, as confirmed by immunofluorescence, immunocapture, and cultivation. Applied and Environmental Microbiology, Vol.73 (No.22). pp. 7471-7473. doi:10.1128/AEM.00978-07

Edwards, L., Hicks, S., Furman, M., O'Neill, C., Wellington, E. M. H., Torrente, F., Fitzhenry, R., Phillips, A. and Murch, Simon (2007) Seg/I producing Staphylococcus aureus induces intestinal epithelial cytopathy independent of T cell responses. In: European Society for Paediatric Gastroenterology, Hepatology, and Nutrition Annual Meeting , Barcelona, Spain, May 9-12, 2007. Published in: Journal of Pediatric Gastroenterology and Nutrition, Vol.44 (Suppl.1). p. 118. ISSN 0277-2116. doi:10.1097/01.mpg.0000269425.97715.c6

2006

Sweeney, F. P., Courtenay, Orin, Ul-Hassan, Atiya, Hibberd, V., Reilly, L. A. and Wellington, E. M. H. (2006) Immunomagnetic recovery of Mycobacterium bovis from naturally infected environmental samples. LETTERS IN APPLIED MICROBIOLOGY, 43 (4). pp. 364-369. doi:10.1111/j.1472-765X.2005.01983.x

Courtenay, Orin, Reilly, L. A., Sweeney, F. P., Hibberd, V., Bryan, S., Ul-Hassan, Atiya, Newman, C., Macdonald, D. W., Delahay, R. J., Wilson, G. J. and Wellington, E. M. H. (2006) Is Mycobacterium bovis in the environment important for the persistence of bovine tuberculosis? Biology Letters, Vol.2 (No.3). pp. 460-462. doi:10.1098/rsbl.2006.0468

Krsek, Martin and Wellington, E. M. H. (2006) Studies of microbial community structure and function below ground in a managed upland grassland site at Sourhope Research Station. Applied Soil Ecology, Volume 33 (Number 2). pp. 127-136. doi:10.1016/j.aposil.2006.03.0087