The Library
Browse by Warwick Author
Up a level |
Number of items: 40.
Journal Article
Avalos-Pacheco, Alejandra, Rossell, David and Savage, Richard S. (2022) Heterogeneous large datasets integration using bayesian factor regression. Bayesian Analysis, 17 (1). pp. 33-66. doi:10.1214/20-BA1240 ISSN 1931-6690.
Widlak, Monika, Neal, Matthew, Daulton, Emma, Thomas, Claire L., Tomkins, Claudia, Singh, Baljit, Harmston, Christopher , Wicaksono, Alfian, Evans, Charles, Smith, Steve, Savage, Richard S., Covington, James A. and Arasaradnam, Ramesh P. (2018) Risk stratification of symptomatic patients suspected of colorectal cancer using faecal and urinary markers. Colorectal Disease, 20 (12). O335-O342. doi:10.1111/codi.14431 ISSN 1462-8910.
Liu, Z., Peneva, I. S., Evison, F., Sahdra, S., Mirza, D. F., Charnley, R. M., Savage, R. S., Moss, P. A. and Roberts, K. J. (2018) Ninety day mortality following pancreatoduodenectomy in Q11England : has the optimum centre volume been identiο¬ed? HPB, 20 (11). pp. 1012-1020. doi:10.1016/j.hpb.2018.04.008 ISSN 1365-182X.
Liu, Z., Peneva, I. S., Evison, F., Sahdra, S., Mirza, D. F., Charnley, R. M., Savage, R. S., Moss, P. A. and Roberts, K. J. (2018) Ninety day mortality following pancreatoduodenectomy in England: has the optimum centre volume been identified? HPB, 20 (11). pp. 1012-1020. doi:10.1016/j.hpb.2018.04.008 ISSN 1365-182X.
Martinez-Vernon, Andrea, Covington, James A., Arasaradnam, Ramesh P., Esfahani, Siavash, OβConnell, Nicola, Kyrou, Ioannis and Savage, Richard S. (2018) An improved machine learning pipeline for urinary volatiles disease detection : diagnosing diabetes. PLoS One, 13 (9). e0204425. doi:10.1371/journal.pone.0204425 ISSN 1932-6203.
Savage, Richard S. (2018) PTU-045β Urinary VOC and faecal microbiome characterisation of colorectal cancer patients, their first-degree relatives and spouses. Gut, 67 . A194. doi:10.1136/gutjnl-2018-BSGAbstracts.386 ISSN 0017-5749.
Lewis, Joseph M., Savage, Richard S., Beeching, Nicholas J., Beadsworth, Mike B. J., Feasey, Nicholas and Covington, James A. (2017) Identifying volatile metabolite signatures for the diagnosis of bacterial respiratory tract infection using electronic nose technology : a pilot study. PLoS One, 12 (12). e0188879. doi:10.1371/journal.pone.0188879 ISSN 1932-6203.
van Gaal, Nora, Lakenman, Rozanne, Covington, James A., Savage, Richard S., de Groot, Evelien, Bomers, Marije, Benninga, Marc, Mulder, Chris, de Boer, Nanne and de Meij, Tim (2017) Faecal volatile organic compounds analysis using field asymmetric ion mobility spectrometry : non-invasive diagnostics in paediatric inflammatory bowel disease. Journal of Breath Research, 12 (1). 016006. doi:10.1088/1752-7163/aa6f1d ISSN 1752-7163.
Arasaradnam, Ramesh P., McFarlane, Michael J., Daulton, Emma, Skinner, Jim, OβConnell, Nicola, Wurie, Subiatu, Chambers, Samantha, Nwokolo, Chuka U., Bardhan, Karna Dev, Savage, Richard S. and Covington, James A. (2016) Non-invasive exhaled volatile organic biomarker analysis to detect inflammatory bowel disease (IBD). Digestive and Liver Disease, 48 (2). pp. 148-153. pii/S1590865815301067. doi:10.1016/j.dld.2015.10.013 ISSN 1590-8658.
Ahmed, Usman, Anwar, Attia, Savage, Richard S., Thornalley, Paul J. and Rabbani, Naila (2016) Protein oxidation, nitration and glycation biomarkers for early-stage diagnosis of osteoarthritis of the knee and typing and progression of arthritic disease. Arthritis Research & Therapy, 18 (1). 250. doi:10.1186/s13075-016-1154-3 ISSN 1478-6354.
Sahota, Amandip S., Gowda, Ravi, Arasaradnam, Ramesh P., Daulton, Emma, Savage, Richard S., Skinner, Jim R., Adams, Emily, Ward, Stephen A. and Covington, James A. (2016) A simple breath test for tuberculosis using ion mobility : a pilot study. Tuberculosis, 99 . pp. 143-146. doi:10.1016/j.tube.2016.05.005 ISSN 1472-9792.
Real, Francisco X., Ward, Douglas G., Baxter, Laura, Gordon, Naheema S., Ott, Sascha, Savage, Richard S., Beggs, Andrew D., James, Jonathan D., Lickiss, Jennifer, Green, Shaun, Wallis, Yvonne, Wei, Wenbin, James, Nicholas D., Zeegers, Maurice P., Cheng, K. K., Mathews, Glenn M., Patel, Prashant, Griffiths, Michael and Bryan, Richard T. (2016) Multiplex PCR and next generation sequencing for the non-invasive detection of bladder cancer. PLoS One, 11 (2). pp. 1-11. e0149756. doi:10.1371/journal.pone.0149756 ISSN 1932-6203.
Arasaradnam, Ramesh P., McFarlane, Michael J., Ling, K., Wurie, S., OβConnell, N., Nwokolo, Chuka U., Bardhan, Karna Dev, Skinner, J., Savage, Richard S. and Covington, James A. (2016) Breathomicsβexhaled volatile organic compound analysis to detect hepatic encephalopathy : a pilot study. Journal of Breath Research, 10 (1). pp. 1-6. 016012. doi:10.1088/1752-7155/10/1/016012 ISSN 1752-7163.
Savage, Richard S. and Yuan, Yinyin (2016) Predicting chemoinsensitivity in breast cancer with βomics/digital pathology data fusion. Royal Society Open Science , 3 (2). pp. 1-13. 140501. doi:10.1098/rsos.140501 ISSN 2054-5703.
Kikuchi, Hugh, Reiman, Anne, Nyoni, Jenifer, Lloyd, Katherine L., Savage, Richard S., Wotherspoon, Tina, Berry, Lisa, Snead, David and Cree, Ian A. (2016) Development and validation of a TaqMan Array for cancer mutation analysis. Pathogenesis, 3 (1). pp. 1-8. S2214-6636(16)00002-X. doi:10.1016/j.pathog.2016.02.001 ISSN 2214-6636.
Field, Sarah L., Dasgupta, Tathagata, Cummings, Michele, Savage, Richard S., Adebayo, Julius, McSara, Hema, Gunawardena, Jeremy and Orsi, Nicolas M. (2015) Bayesian modeling suggests that IL-12 (p40), IL-13 and MCP-1 drive murine cytokine networks in vivo. BMC Systems Biology, 9 (46). pp. 1-22. doi:10.1186/s12918-015-0226-3 ISSN 1752-0509.
The NIEHS-NCATS-UNC DREAM Toxicogenetics Collaboration (Including:
Moore, Jonathan D., Savage, Richard S., Eduati, Federica, Mangravite, Lara M., Wang, Tao, Tang, Hao, Bare, J. Christopher, Huang, Ruili, Norman, Thea, Kellen, Mike et al.
).
(2015)
Prediction of human population responses to toxic compounds by a collaborative competition.
Nature Biotechnology, 33
(9).
pp. 933-940.
doi:10.1038/nbt.3299
ISSN 1087-0156.
Covington, James A., van. der Schee, M. P., Edge, A. S. L., Boyle, B., Savage, R. S. and Arasaradnam, Ramesh P. (2015) The application of FAIMS gas analysis in medical diagnostics. The Analyst, 140 (20). pp. 6775-6781. doi:10.1039/c5an00868a ISSN 0003-2654.
Covington, James A., McFarlane, Michael J., Kho, L., Wurie, S., O'Connell, N., Savage, R. S., Nwokolo, Chuka U., Bardhan, Karna Dev and Arasaradnam, Ramesh P. (2015) PWE-110 Breathomics β distinguishing minimal from overt hepatic encephalopathy using volatile organic compound analysis : a pilot study. Gut, 64 (Supplement 1). A260.2-A261. doi:10.1136/gutjnl-2015-309861.559 ISSN 0017-5749.
Arasaradnam, Ramesh P., McFarlane, Michael J., Daulton, E., Westenbrink, Eric W., O'Connell, Nicola, Wurie, Subiatu, Nwokolo, Chuka U., Bardhan, Karna Dev, Savage, Richard S. and Covington, James A. (2015) Non-invasive distinction of non-alcoholic fatty liver disease using urinary volatile organic compound analysis : early results. Journal of Gastrointestinal and Liver Diseases, Volume 24 (Number 2). pp. 197-201. Article number 15. doi:10.15403/jgld.2014.1121.242.ury ISSN 1842-1121.
Bomers, Marije K., Menke, Frederik P., Savage, Richard S., Vandenbroucke-Grauls, Christina M. J. E., van Agtmael, Michiel A., Covington, James A. and Smulders, Yvo M. (2015) Rapid, accurate, and on-site detection of C. difficile in stool samples. The American Journal of Gastroenterology, 110 (4). pp. 588-594. doi:10.1038/ajg.2015.90 ISSN 0002-9270.
Ahmed, Usman, Anwar, Attia, Savage, Richard S., Costa, Matthew L., Mackay, N., Filer, Andrew, Raza, Karim, Watts, Richard, Winyard, P. G., Haigh, R. C., Thornalley, Paul J. and Rabbani, Naila (2015) Biomarker combination detects early-stage and discriminates osteoarthritis, rheumatoid arthritis and other inflammatory joint disease. Scientific Reports (5). L9259. doi:10.1038/srep09259 ISSN 2045-2322.
Lloyd, Katherine L., Cree, Ian A. and Savage, Richard S. (2015) Prediction of resistance to chemotherapy in ovarian cancer : a systematic review. BMC Cancer, 15 (1). pp. 1-32. 117. doi:10.1186/s12885-015-1101-8 ISSN 1471-2407.
Arasaradnam, Ramesh P., Kho, Ling, McFarlane, Michael J., Wurie, Subiatu, O'Connell, Nicola, Savage, Richard S., Nwokolo, Chuka U., Bardhan, Karna Dev and Covington, James A. (2015) Mo1019 : Breathomics - distinguishing minimal from overt hepatic encephalopathy by volatile organic compound detection in breath : a pilot study. Gastroenterology, 148 (4). S-1064. doi:10.1016/S0016-5085(15)33638-6 ISSN 0016-5085.
Arasaradnam, Ramesh P., Westenbrink, Eric W., McFarlane, Michael J., Harbord, Ruth, Chambers, Samantha, OβConnell, Nicola, Bailey, Catherine, Nwokolo, Chuka U., Bardhan, Karna Dev, Savage, Richard S. and Covington, James A. (2014) Differentiating coeliac disease from irritable bowel syndrome by urinary volatile organic compound analysis : a pilot study. PLoS One, 9 (10). e107312. doi:10.1371/journal.pone.0107312 ISSN 1932-6203.
Sirinukunwattana, Korsuk, Savage, Richard S., Bari, Muhammad F., Snead, David R. J. and Rajpoot, Nasir M. (2013) Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics. PLoS One, 8 (10). e75748. doi:10.1371/journal.pone.0075748 ISSN 1932-6203.
Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, P. (Paul), Wild, David L. and Savage, Richard S. (2013) Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm. PLoS One, 8 (4). e59795. doi:10.1371/journal.pone.0059795 ISSN 1932-6203.
Kirk, Paul, Griffin, Jim E., Savage, Richard S., Ghahramani, Zoubin and Wild, David L. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics, Volume 28 (Number 4). pp. 3290-3297. doi:10.1093/bioinformatics/bts595 ISSN 1367-4803.
Yuan, Yinyin, Savage, Richard S. and Markowetz, Florian (2011) Patient-specific data fusion defines prognostic cancer subtypes. PLoS Computational Biology, Vol.7 (No.10). e1002227. doi:10.1371/journal.pcbi.1002227 ISSN 1553-7358.
Cooke, Emma J., Savage, Richard S., Kirk, Paul, Darkins, Robert and Wild, David L. (2011) Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics, Vol.12 (No.1). p. 399. doi:10.1186/1471-2105-12-399 ISSN 1471-2105.
Smith, A. J., Wang, L., Oliver, S. J., Auld, R., Bock, J., Brisbin, D., Burgarella, D., Chanial, P., Chapin, E., Clements, D. L. et al.
(2011)
HerMES: point source catalogues from deep Herschel-SPIRE observations.
Monthly Notices of the Royal Astronomical Society, Vol.419
(No.1).
pp. 377-389.
doi:10.1111/j.1365-2966.2011.19709.x
ISSN 0035-8711.
Oliver, S. J., Wang, L., Smith, A. J., Altieri, B., Amblard, A., Arumugam, V., Auld, R., Aussel, H., Babbedge, T., Blain, A. W. (Andrew W.) et al.
(2010)
HerMES : SPIRE galaxy number counts at 250, 350, and 500 ΞΌm.
Astronomy & Astrophysics, Vol.518
(No.L21).
doi:10.1051/0004-6361/201014697
ISSN 0004-6361.
Oliver, S. J., Wang, L., Smith, A. J., Altieri, B., Amblard, A., Arumugam, V., Auld, R., Aussel, H., Babbedge, T., Blain, A. et al.
(2010)
HerMES: SPIRE galaxy number counts at 250, 350, and 500 mu m.
Astronomy & Astrophysics, Vol.518
.
Article no. L21.
doi:10.1051/0004-6361/201014697
ISSN 0004-6361.
Savage, Richard S., Ghahramani, Zoubin, Griffin, Jim E., De la Cruz, Bernard J. and Wild, David L. (2010) Discovering transcriptional modules by Bayesian data integration. Bioinformatics, Vol.26 (No.12). pp. 158-167. doi:10.1093/bioinformatics/btq210 ISSN 1367-4803.
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242 ISSN 1471-2105.
Conference Item
Esfahani, Siavash, Skinner, J. R., Savage, Richard S., O'Connell, N., Kyrou, I., Nwokolo, Chuka U., Bardhan, Karna Dev, Arasaradnam, Ramesh P. and Covington, James A. (2015) A rapid discrimination of diabetic patients from volunteers using urinary volatile and an electronic nose. In: 16th International Symposium on Olfaction and Electronic Nose, Dijon, France, 28 Jun - 1 Jul 2015 (Unpublished)
Journal Item
Cooke, Emma J., Savage, Richard S. and Wild, David L. (2009) Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks. Seminars in Cell and Developmental Biology, Vol.20 (No.7). pp. 863-868. ISSN 1084-9521 doi:10.1016/j.semcdb.2009.08.004
Dataset
Lewis, Joseph M., Savage, Richard S., Beeching, Nicholas J., Beadsworth, Mike B. J., Feasey, Nicholas and Covington, James A. (2017) Data for Identifying volatile metabolite signatures for the diagnosis of bacterial respiratory tract infection using electronic nose technology : a pilot study. [Dataset]
Covington, James A., Lewis, Joseph M., Savage, Richard S., Beeching, Nicholas J., Beardsworth, Michael and Feasey, Nicholas (2017) Data for Identifying volatile metabolite signatures for the diagnosis of bacterial respiratory tract infection using electronic nose technology : a pilot study. [Dataset]
Sahota, Amandip S., Gowda, Ravi, Arasaradnam, Ramesh P., Daulton, Emma, Savage, Richard S., Skinner, Jim R., Adams, Emily, Ward, Stephen A. and Covington, James A. (2016) Data for A simple breath test for Tuberculosis using ion mobility: A pilot study. [Dataset]
This list was generated on Thu Mar 28 19:31:11 2024 GMT.