2018

Puxty, Richard John, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2018) Energy limitation of cyanophage development : implications for marine carbon cycling. ISME Journal, 12 . 1273-1286 . doi:10.1038/s41396-017-0043-3

2016

Puxty, Richard J., Millard, Andrew D., Evans, David J. and Scanlan, David J. (2016) Viruses inhibit CO2 fixation in the most abundant phototrophs on earth. Current Biology, 26 (12). pp. 1585-1589. doi:10.1016/j.cub.2016.04.036

2015

Puxty, Richard John, Perez-Sepulveda, Blanca, Rihtman, Branko, Evans, David J., Millard, Andrew D. and Scanlan, David J. (2015) Spontaneous deletion of an “ORFanage” region facilitates host adaptation in a “photosynthetic” cyanophage. PLoS One, Volume 10 (Number 7). pp. 1-13. Article number e0132642. doi:10.1371/journal.pone.0132642

Tuplin, Andrew, Struthers, Madeleine, Cook, Jonathan P., Bentley, Kirsten and Evans, David J. (2015) Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail. Nucleic Acids Research, 43 (5). pp. 2914-2926. doi:10.1093/nar/gkv142

2014

Tulloch, Fiona, Atkinson, Nicky J., Evans, David J., Ryan, Martin D. and Simmonds, Peter (2014) RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies. eLife . doi:10.7554/eLife.04531

Wood, Graham, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2014) Error correction and diversity analysis of population mixtures determined by NGS. PeerJ PrePrints, Volume 2 . Article number e645. doi:10.7717/peerj.645

Puxty, Richard John, Millard, Andrew D., Evans, David J. and Scanlan, David J. (2014) Shedding new light on viral photosynthesis. Photosynthesis Research, 126 (1). pp. 71-97. doi:10.1007/s11120-014-0057-x

Wood, Graham, Ryabov, Eugene V., Fannon, Jessica, Moore, Jonathan D., Evans, David J. and Burroughs, Nigel John (2014) MosaicSolver : a tool for determining recombinants of viral genomes from pileup data. Nucleic Acids Research, Volume 42 (Number 16). Article number e123. doi:10.1093/nar/gku524

Ryabov, Eugene V., Wood, Graham, Fannon, Jessica, Moore, Jonathan D., Bull, James C. (James Christopher), Chandler, Dave, Mead, A. (Andrew), Burroughs, Nigel John and Evans, David J. (2014) A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after varroa destructor-mediated, or in vitro, transmission. PLoS Pathogens, Volume 10 (Number 6). Article number e1004230. doi:10.1371/journal.ppat.1004230

Lowry, Kym, Woodman, Andrew, Cook, Jonathan P. and Evans, David J. (2014) Recombination in enteroviruses is a biphasic replicative process involving the generation of greater-than genome length 'imprecise' intermediates. PLoS Pathogens, Volume 10 (Number 6). Article number e1004191. doi:10.1371/journal.ppat.1004191

Atkinson, Nicky J., Witteveldt, Jeroen, Evans, David J. and Simmonds, Peter (2014) The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication. Nucleic Acids Research, Volume 42 (Number 7). pp. 4527-4545. doi:10.1093/nar/gku075

2013

Witteveldt, Jeroen, Blundell, Richard, Maarleveld, Joris J., McFadden, Nora, Evans, David J. and Simmonds, Peter (2013) The influence of viral RNA secondary structure on interactions with innate host cell defences. Nucleic Acids Research, Volume 42 (Number 5). pp. 3314-3329. doi:10.1093/nar/gkt1291

McFadden, Nora, Arias, Armando, Dry, Inga, Bailey, Dalan, Witteveldt, Jeroen, Evans, David J., Goodfellow, Ian and Simmonds, Peter (2013) Influence of genome-scale RNA structure disruption on the replication of murine norovirus--similar replication kinetics in cell culture but attenuation of viral fitness in vivo. Nucleic Acids Research, Volume 41 (Number 12). pp. 6316-6331. doi:10.1093/nar/gkt334

2012

McWilliam Leitch, E. C., Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Koike, S., Kroes, A. C. M., Lukashev, A., Perera, D., Roivainen, M., Susi, P., Trallero, G., Evans, David J. and Simmonds, P. (2012) The association of recombination events in the founding and emergence of subgenogroup evolutionary lineages of human enterovirus 71. Journal of Virology, Vol.86 (No.5). pp. 2676-2685. doi:10.1128/JVI.06065-11

Tuplin, Andrew, Struthers, Madeleine, Simmonds, P. and Evans, David J. (2012) A twist in the tail : SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication. Nucleic Acids Research, Vol.40 (No.14). pp. 6908-6921. doi:10.1093/nar/gks370

2011

Lomonossoff, George P. and Evans, David J. (2011) Applications of plant viruses in bionanotechnology. In: Palmer , Kenneth (Kenneth E.) and Gleba , Yuri, (eds.) Plant viral vectors. Current Topics in Microbiology and Immunology, 375 . Berlin ; Heidelberg: Springer, pp. 61-87. ISBN 9783642408281

Mutocheluh, M., Hindle, L., Areste, C., Chanas, S. A., Butler, L. M., Lowry, Kym, Shah, K., Evans, David J. and Blackbourn, D. J. (2011) Kaposi's sarcoma-associated herpesvirus viral interferon regulatory factor-2 inhibits type 1 interferon signalling by targeting interferon-stimulated gene factor-3. Journal of General Virology, 92 (10). pp. 2394-2398. doi:10.1099/vir.0.034322-0

Tuplin, Andrew, Evans, David J., Buckley, A., Jones, I. M. (Ian M.), Gould, E. and Gritsun, T. S. (2011) Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus. Nucleic Acids Research, Vol.39 (No.16). pp. 7034-7048. doi:10.1093/nar/gkr237

Moore, Jonathan D., Jironkin, Aleksey, Chandler, Dave, Burroughs, Nigel John, Evans, David J. and Ryabov, Eugene V. (2011) Recombinants between Deformed wing virus and Varroa destructor virus-1 may prevail in Varroa destructor-infested honeybee colonies. Journal of General Virology, Vol.92 . pp. 156-161. doi:10.1099/vir.0.025965-0

2010

Leitch, E. C. McWilliam, Cabrerizo, M., Cardosa, J., Harvala, H., Ivanova, O. E., Kroes, A. C. M., Lukashev, A., Muir, P., Odoom, J., Roivainen, M., Susi, P., Trallero, G., Evans, David J. and Simmonds, P. (2010) Evolutionary dynamics and temporal/geographical correlates of recombination in the human enterovirus enterovirus types 9, 11, and 30. Journal of Virology, Vol.84 (No.18). pp. 9292-9300. doi:10.1128/JVI.00783-10

Millard, Andrew D., Gierga, G., Clokie, Martha R. J., Evans, David J., Hess, Wolfgang R. and Scanlan, David J. (2010) An antisense RNA in a lytic cyanophage links psbA to a gene encoding a homing endonuclease. ISME Journal, The, Vol.2010 (No.4). pp. 1121-1135. doi:10.1038/ismej.2010.43

2009

Leitch, E. C. McWilliam, Bendig, J., Cabrerizo, M., Cardosa, J., Hyypia, T., Ivanova, O. E., Kelly, A., Kroes, A. C. M., Lukashev, A., MacAdam, A., McMinn, P., Roivainen, M., Trallero, G., Evans, David J. and Simmonds, P. (2009) Transmission networks and population turnover of echovirus 30. Journal of Virology, Vol.83 (No.5). pp. 2109-2118. doi:10.1128/JVI.02109-08

2008

Davis, M. (Matthew), Sagan, Selena M., Pezacki, John P., Evans, David J. and Simmonds, Peter (2008) Bioinformatic and physical characterizations of genome-scale ordered RNA structure in mammalian RNA viruses. Journal of Virology, Vol.82 (No.23). pp. 11824-11836. doi:10.1128/JVI.01078-08

Yang, Y. (Yan), Yi, MinKyung, Evans, David J., Simmonds, Peter and Lemon, Stanley M. (2008) Identification of a Conserved RNA Replication Element (cre) within the 3D(pol)-Coding Sequence of Hepatoviruses. Journal of Virology, Volume 82 (Number 20). pp. 10118-10128. doi:10.1128/JVI.00787-08

Diviney, Sinéad, Tuplin, Andrew, Struthers, Madeleine, Armstrong, Victoria, Elliott, Richard M., Simmonds, Peter and Evans, David J. (2008) A hepatitis C virus cis-acting replication element forms a long-range RNA-RNA interaction with upstream RNA sequences in NS5B. Journal of Virology, Vol.82 (No.18). pp. 9008-9022. doi:10.1128/JVI.02326-07

Simmonds, Peter, Karakasiliotis, Ioannis, Bailey, Dalan, Chaudhry, Yasmin, Evans, David J. and Goodfellow, Ian G. (2008) Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses. Nucleic Acids Research, Vol.36 (No.8). pp. 2530-2546. doi:10.1093/nar/gkn096

Evans, David J. (2008) Viral Receptors. In: Encyclopedia of Virology. Encyclopedia of Virology, 3rd Edition . Elsevier, pp. 319-324. ISBN 978-0-12-374410-4