
The Library
Browse by Warwick Author
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Number of items: 24.
2018
Komarzynski, Sandra, Huang, Qianye, Innominato, Pasquale F., Maurice, Monique, Arbaud, Alexandre, Beau, Jacques, Bouchahda, Mohamed, Ulusakarya, Ayhan, Beaumatin, Nicolas, Breda, Gabrièle, Finkenstädt, Bärbel and Lévi, Francis A. (2018) Inter-subject differences in circadian coordination captured in real time in healthy and cancerous individual persons during their daily routine using a mobile internet platform. Journal of Medical Internet Research . (In Press)
Huang, Qianye, Cohen, Dwayne, Komarzynski, Sandra, Li, Xiao-Mei, Innominato, Pasquale F., Lévi, Francis A. and Finkenstädt, Bärbel (2018) Hidden Markov models for monitoring circadian rhythmicity in telemetric activity data. Journal of The Royal Society Interface, 15 (139). doi:doi: 10.1098/rsif-2017-0885
2017
Dunham, Lee S. S., Momiji, Hiroshi, Harper, Claire V., Downton, Polly J., Hey, Kirsty L., McNamara, Anne, Featherstone, Karen, Spiller, David G., Rand, David A., Finkenstädt, Bärbel, White, Michael R. H. and Davis, Julian R.E. (2017) Asymmetry between activation and deactivation during a transcriptional pulse. Cell Systems . doi:10.1016/j.cels.2017.10.013 (In Press)
Minas, Giorgos, Jenkins, Dafyd J., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2017) Inferring transcriptional logic from multiple dynamic experiments. Bioinformatics, 33 (21). pp. 3437-3444. doi:10.1093/bioinformatics/btx407
Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J. (Maria João), Rand, David A. and Finkenstädt, Bärbel (2017) ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. BMC Bioinformatics, 18 (316). doi:doi: 10.1186/s12859-017-1695-8
2016
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494.
2015
Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2015) A stochastic transcriptional switch model for single cell imaging data. Biostatistics, 16 (4). pp. 655-669. doi:10.1093/biostatistics/kxv010
2014
Sidaway-Lee, Kate, Costa, Maria J. (Maria João), Rand, D. A. (David A.), Finkenstädt, Bärbel and Penfield, Steven (2014) Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response. Genome Biology, Volume 15 (Number 3). Article number R45. doi:10.1186/gb-2014-15-3-r45
2013
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201
Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020
Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. doi:10.1093/bioinformatics/btt111
Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7
Finkenstädt, Bärbel, Woodcock, Dan J., Komorowski, Michal, Harper, Claire V., Davis, Julian R. E., White, Mike R. H. and Rand, D. A. (David A.) (2013) Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation : an application to single cell data. Annals of Applied Statistics, Volume 7 ( Number 4). pp. 1960-1982.
2012
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
Pinto, A. A., Ferreira, M., Finkenstädt, Bärbel, Oliveira, B. and Yannacopoulos, A. N. (2012) On the convergence to Walrasian prices in random matching Edgeworthian economies. Central European Journal of Operations Research, Volume 20 (Number 3). pp. 485-495. doi:10.1007/s10100-011-0208-5
Rittman, Martyn, Hoffmann, Søren V., Gilroy, Emma, Hicks, Matthew R., Finkenstädt, Bärbel and Rodger, Alison (2012) Probing the structure of long DNA molecules in solution using synchrotron radiation linear dichroism. Physical Chemistry Chemical Physics, Vol.14 (No.1). pp. 353-366. doi:10.1039/c1cp22371b
2011
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607
Ferreira, M., Finkenstädt, Bärbel, Oliveira, B. M. P. M., Pinto, Alberto A. and Yannacopoulos, A. N. (2011) Bargaining skills in an Edgeworthian economy. In: Peixoto, Mauricio Matos and Pinto, Alberto A. and Rand, David A., (eds.) Dynamics, Games and Science I : DYNA 2008, in Honor of Maurício Peixoto and David Rand, University of Minho, Braga, Portugal, September 8-12, 2008. Springer Proceedings in Mathematics, Volume 1 (Number 2011). Springer, pp. 339-352. ISBN 9783642114557
2010
Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. doi:10.1016/j.bpj.2010.03.032
2009
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343
2008
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562
2007
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367
2006
Lekone, Phenyo E. and Finkenstädt, Bärbel (2006) Statistical inference in a stochastic epidemic SEIR model with control intervention : Ebola as a case study. Biometrics, Volume 62 (Number 4). pp. 1170-1177. doi:10.1111/j.1541-0420.2006.00609.x
This list was generated on Sat Apr 21 00:08:28 2018 BST.