2017

Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J. (Maria João), Rand, David A. and Finkenstädt, Bärbel. (2017) ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. BMC Bioinformatics, 18 (316). ISSN 1471-2105

2016

Featherstone, Katie, Hey, K., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E.. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. ISSN 2050-084X

2015

Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, D. A. (David A.) and Finkenstädt, Bärbel. (2015) A stochastic transcriptional switch model for single cell imaging data. Biostatistics, 16 (4). pp. 655-669. ISSN 1465-4644

2014

Sidaway-Lee, Kate, Costa, Maria J. (Maria João), Rand, D. A. (David A.), Finkenstädt, Bärbel and Penfield, Steven. (2014) Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response. Genome Biology, Volume 15 (Number 3). Article number R45. ISSN 1474-7596

2013

Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.). (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. ISSN 1367-4803

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis and Rand, D. A. (David A.). (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. ISSN 1465-4644

Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.). (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. ISSN 1367-4803

Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W.. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. ISSN 1744-4292

Finkenstädt, Bärbel, Woodcock, Dan J., Komorowski, Michal, Harper, Claire V., Davis, Julian R. E., White, Mike R. H. and Rand, D. A. (David A.). (2013) Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation : an application to single cell data. Annals of Applied Statistics, Volume 7 ( Number 4). pp. 1960-1982. ISSN 1932-6157

2012

. (2012) Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell, Vol.24 (No.9). pp. 3530-3557. ISSN 1040-4651

Pinto, A. A., Ferreira, M., Finkenstädt, Bärbel, Oliveira, B. and Yannacopoulos, A. N.. (2012) On the convergence to Walrasian prices in random matching Edgeworthian economies. Central European Journal of Operations Research, Volume 20 (Number 3). pp. 485-495. ISSN 1435-246X

Rittman, Martyn, Hoffmann, Søren V., Gilroy, Emma, Hicks, Matthew R., Finkenstädt, Bärbel and Rodger, Alison. (2012) Probing the structure of long DNA molecules in solution using synchrotron radiation linear dichroism. Physical Chemistry Chemical Physics, Vol.14 (No.1). pp. 353-366. ISSN 1463-9076

2011

Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H.. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). ISSN 1545-7885

Ferreira, M., Finkenstädt, Bärbel, Oliveira, B. M. P. M., Pinto, Alberto A. and Yannacopoulos, A. N. (2011) Bargaining skills in an Edgeworthian economy. In: Peixoto, Mauricio Matos and Pinto, Alberto A. and Rand, David A., (eds.) Dynamics, Games and Science I : DYNA 2008, in Honor of Maurício Peixoto and David Rand, University of Minho, Braga, Portugal, September 8-12, 2008. Springer Proceedings in Mathematics, Volume 1 (Number 2011). Springer, pp. 339-352. ISBN 9783642114557

2010

Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.). (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. ISSN 0006-3495

2009

Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.). (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). ISSN 1471-2105

2008

Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.). (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. ISSN 1367-4803

2007

Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.). (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. ISSN 1367-4803

2006

Lekone, Phenyo E. and Finkenstädt, Bärbel. (2006) Statistical inference in a stochastic epidemic SEIR model with control intervention : Ebola as a case study. Biometrics, Volume 62 (Number 4). pp. 1170-1177. ISSN 0006-341X