2012

Kirkilionis, Markus and Atay, F. (2012) Introduction to special issue ECCS’10 in Theory in Biosciences. Theory in Biosciences, Vol.131 (No.2). pp. 59-60. doi:10.1007/s12064-012-0155-2

2011

Kirkilionis, Markus and Kepes, Francois (2011) Introduction to special issue ECCS’09 in Theory in Biosciences. Theory in Biosciences, Vol.130 (No.3). p. 153. doi:10.1007/s12064-011-0123-2

Kirkilionis, Markus, Janus, Ulrich and Sbano, Luca (2011) Multi-scale genetic dynamic modelling I : an algorithm to compute generators. Theory in Biosciences, Vol.130 (No.3). pp. 165-182. doi:10.1007/s12064-011-0125-0

2010

Eigel, M., George, E. and Kirkilionis, Markus (2010) A mesh-free partition of unity method for diffusion equations on complex domains. IMA Journal of Numerical Analysis, Vol.30 (No.3). pp. 629-653. doi:10.1093/imanum/drn053

Connaughton, Colm, Kirkilionis, Markus and Kepes, Francois (2010) Editorial [European Conference on Complex Systems 2009]. Advances in Complex Systems, Vol.13 (No.3). pp. 251-252. doi:10.1142/S0219525910002657

Kirkilionis, Markus and Sbano, Luca (2010) An averaging principle for combined interaction graphs - connectivity and appications to genetic switches. Advances in Complex Systems, Vol.13 (No.3 Sp. Iss. SI). pp. 293-326. doi:10.1142/S0219525910002669

Roos, A. M. de, Diekmann, O., Getto, P. and Kirkilionis, Markus (2010) Numerical equilibrium analysis for structured consumer resource models. Bulletin of Mathematical Biology, Vol.72 (No.2). pp. 259-297. doi:10.1007/s11538-009-9445-3

Kirkilionis, Markus (2010) Exploration of cellular reaction systems. Briefings in Bioinformatics, Vol.11 (No.1). pp. 153-178. doi:10.1093/bib/bbp062

2009

Vladimirou, Elina, Li, Michael, Aldridge, Cassie P., Frigerio, Lorenzo, Kirkilionis, Markus A. and Robinson, Colin (2009) Diffusion of a membrane protein, Tat subunit Hcf106, is highly restricted within the chloroplast thylakoid network. FEBS Letters, Volume 583 (Number 22). pp. 3690-3696. doi:10.1016/j.febslet.2009.10.057

Domijan, Mirela and Kirkilionis, Markus (2009) Bistability and oscillations in chemical reaction networks. Journal of Mathematical Biology, Vol.59 (No.4). pp. 467-501. doi:10.1007/s00285-008-0234-7

Bouchekhima, A. -N., Frigerio, Lorenzo and Kirkilionis, Markus (2009) Geometric quantification of the plant endoplasmic reticulum. Journal of Microscopy, Vol.234 (No.2). pp. 158-172. doi:10.1111/j.1365-2818.2009.03158.x

Kirkilionis, Markus, Domijan, Mirela, Eigel, M., George, E., Li, Mike and Sbano, L. (2009) A definition of cellular interface problems. In: 9th International Workshop on Membrane Computing, Edinburgh, Scotland, July 28-31, 2008. Published in: Lecture Notes in Computer Science, Vol.5391 pp. 36-62. ISBN 978-3-540-95884-0. ISSN 0302-9743. doi:10.1007/978-3-540-95885-7_4

2008

Aldridge, Cassie, Spence, Edward M., Kirkilionis, Markus, Frigerio, Lorenzo and Robinson, Colin (2008) Tat-dependent targeting of Rieske iron-sulphur proteins to both the plasma and thylakoid membranes in the cyanobacterium Synechocystis PCC6803. Molecular Microbiology, Volume 70 (Number 1). pp. 140-150. doi:10.1111/j.1365-2958.2008.06401.x

Domijan, Mirela and Kirkilionis, Markus (2008) Graph theory and qualitative analysis of reaction networks. In: Annual European Conference on Complex Systems, Dresden, Germany, Oct 01-06, 2007. Published in: Networks and Heterogeneous Media , Vol.3 (No.2). pp. 295-322. ISSN 1556-1801.

Sbano, L. and Kirkilionis, Markus (2008) Multiscale analysis of reaction networks. In: Annual European Conference on Complex Systems, Dresden, Germany, OCT 01-06, 2007. Published in: Theory in Biosciences, Vol.127 (No.2). pp. 107-123. ISSN 1431-7613. doi:10.1007/s12064-008-0036-x

Kirkilionis, Markus (2008) Reaction systems, graph theory and dynamical networks. In: 5th Workshop on Computation of Biochemical Pathways and Genetic Networks : a BioSim event, BIOQUANT, University of Heidelberg, 22-23 Sep 2008. Published in: 5th Workshop on Computation of Biochemical Pathways and Genetic Networks : a BioSim event : BIOQUANT, University of Heidelberg, September 22-23, 2008 pp. 131-150. ISSN 9783832519933.

Kirkilionis, Markus, Martin, E. and Erwin, G. (2008) The partition of unity meshfree method for solving transport-reaction equations on complex domains : implementation and applications in the life sciences. In: Griebel, Michael and Schweitzer, Marc Alexander, (eds.) Meshfree methods for partial differential equations IV. Lecture notes in computational science and engineering, Vol.65 . Berlin: Springer. ISBN 9783540799948