Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, P. (Paul), Wild, David L. and Savage, Richard S.. (2013) Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm. PLoS One, Volume 8 (Number 4). Article no. e59795. ISSN 1932-6203

. (2012) Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis. The Plant Cell, Vol.24 (No.9). pp. 3530-3557. ISSN 1040-4651

Burkoff, Nikolas S., Várnai, Csilla, Wells, Stephen A. and Wild, David L.. (2012) Exploring the energy landscapes of protein folding simulations with Bayesian computation. Biophysical Journal, Vol.102 (No.4). pp. 878-886. ISSN 0006-3495

Kirk, Paul, Griffin, Jim E., Savage, Richard S., Ghahramani, Zoubin and Wild, David L. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics . ISSN 1367-4803 (In Press)

Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L.. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. ISSN 1367-4803

Cooke, Emma J., Savage, Richard S., Kirk, Paul, Darkins, Robert and Wild, David L. (2011) Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics, Vol.12 (No.1). p. 399. ISSN 1471-2105

. (2011) High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell, The, Vol.23 (No.3). pp. 873-894. ISSN 1040-4651

Savage, Richard S., Ghahramani, Zoubin, Griffin, Jim E., De la Cruz, Bernard J. and Wild, David L.. (2010) Discovering transcriptional modules by Bayesian data integration. Bioinformatics, Vol.26 (No.12). pp. 158-167. ISSN 1367-4803

Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M.. (2010) A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Journal of Computational Biology , Vol.17 (No.3). pp. 355-367. ISSN 1066-5277

Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M.. (2010) A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series. Lecture Notes in Computer Science, Vol.5541 . pp. 201-216. ISSN 0302-9743

. (2010) The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics, Vol.11 (Article 10). ISSN 1471-2164

Rasmussen, Carl Edward, De la Cruz, Bernard J., Ghahramani, Zoubin and Wild, David L.. (2009) Modeling and visualizing uncertainty in gene expression clusters using Dirichlet process mixtures. IEEE - ACM Transactions on Computational Biology and Bioinformatics, Vol.6 (No.4). pp. 615-628. ISSN 1545-5963

Rasmussen, Carl Edward, de la Cruz, Bernard J., Ghahramani, Zoubin and Wild, David L.. (2009) Modeling and visualizing uncertainty in gene expression clusters using dirichlet process mixtures. IEEE - ACM Transactions on Computational Biology and Bioinformatics, Vol.6 (No.4). pp. 615-628. ISSN 1545-5963

Cooke, Emma J., Savage, Richard S. and Wild, David L. (2009) Computational approaches to the integration of gene expression, ChIP-chip and sequence data in the inference of gene regulatory networks. Seminars in Cell and Developmental Biology, Vol.20 (No.7). pp. 863-868. ISSN 1084-9521

Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, M. (Murray), Denby, Katherine J. and Wild, David L.. (2009) R/BHC: fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, Vol.10 . No.242. ISSN 1471-2105

Podtelezhnikov, Alexei A. and Wild, David L.. (2009) Reconstruction and stability of secondary structure elements in the context of protein structure prediction. Biophysical Journal, Vol.96 (No.11). pp. 4399-4408. ISSN 0006-3495

Saqi, Mansoor, Dobson, Richard J B, Kraben, Preben, Hodgson, D. A. (David A.) and Wild, David L.. (2009) An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. Journal of Integrative Bioinformatics, Vol.6 (No.1). p. 107. ISSN 1613-4516

Podtelezhnikov, Alexei A. and Wild, David L. (2008) Comment on "Efficient Monte Carlo trial moves for polypeptide simulations" [J. Chem. Phys. 123, 174905 (2005)]. Journal of Chemical Physics, Vol.129 (No.2). Article No. 027103 . ISSN 0021-9606

Podtelezhnikov, Alexei A. and Wild, David L.. (2008) CRANKITE: a fast polypeptide backbone conformation sampler. Source Code for Biology and Medicine, Vol. 3 (No. 12). ISSN 1751-0473

Podtelezhnikov, Alexei A., Ghahramani, Zoubin and Wild, David L.. (2007) Learning about protein hydrogen bonding by minimizing contrastive divergence. Proteins: Structure, Function, and Bioinformatics, Vol.66 (No.3). pp. 588-599. ISSN 0887-3585