2016

Mason, Sam, Sayyid, Faiz, Kirk, Paul, Starr, Colin and Wild, David L. (2016) MDI-GPU : accelerating integrative modelling for genomic-scale data using GP-GPU computing. Statistical Applications in Genetics and Molecular Biology, 15 (1). pp. 83-86. doi:10.1515/sagmb-2015-0055

2013

Darkins, Robert, Cooke, Emma J., Ghahramani, Zoubin, Kirk, P. (Paul), Wild, David L. and Savage, Richard S. (2013) Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm. PLoS One, 8 (4). e59795. doi:10.1371/journal.pone.0059795

2012

Kirk, Paul, Griffin, Jim E., Savage, Richard S., Ghahramani, Zoubin and Wild, David L. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics, Volume 28 (Number 4). pp. 3290-3297. doi:10.1093/bioinformatics/bts595

Toni, Tina, Ozaki, Yu-ichi, Kirk, Paul, Kuroda, Shinya and Stumpf, Michael P. H. (2012) Elucidating the in vivo phosphorylation dynamics of the ERK MAP kinase using quantitative proteomics data and Bayesian model selection. Molecular BioSystems, Volume 8 (Number 7). pp. 1921-1929. doi:10.1039/c2mb05493k

2011

Cooke, Emma J., Savage, Richard S., Kirk, Paul, Darkins, Robert and Wild, David L. (2011) Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements. BMC Bioinformatics, Vol.12 (No.1). p. 399. doi:10.1186/1471-2105-12-399

Kirk, Paul, Witkover, Aviva, Courtney, Alan, Lewin, Alexandra M., Wait, Robin, Stumpf, M. P. H. (Michael P. H.), Richardson, Sylvia, Taylor, G. P. (Graham P.) and Bangham, C. R. M. (Charles R. M.) (2011) Plasma proteome analysis in HTLV-1-associated myelopathy/tropical spastic paraparesis. Retrovirology, Vol.8 . p. 81. doi:10.1186/1742-4690-8-81