Al-Lehyani, Ibrahim H., Grime, John M. A., Bano, Matthew, McKelvey, Kim and Allen, Michael P.. (2013) Coarse-grained simulation of transmembrane peptides in the gel phase. Journal of Computational Physics, Vol.238 . pp. 97-105. ISSN 0021-9991

Swetnam, Adam D. and Allen, Michael P.. (2012) Selective adsorption of lattice peptides on patterned surfaces. Physical Review E, Vol.85 (No.6). Article no. 062901. ISSN 1539-3755

Allen, Michael P. and Swetnam, Adam D.. (2012) Wang-Landau simulations of adsorbed and confined lattice polymers. Physics Procedia, Vol.34 . pp. 6-13. ISSN 1875-3892

Allen, Michael P., Quigley, David and Růžička, Štěpán. (2012) Folding kinetics of a polymer. Physical Chemistry Chemical Physics . ISSN 1463-9076 (In Press)

Swetnam, Adam D., Brett, Charles and Allen, Michael P.. (2012) Phase diagrams of knotted and unknotted ring polymers. Physical Review E . ISSN 1539-3755 (In Press)

Allen, Michael P. and Swetnam, Adam D.. (2012) Studying the adsorption of polymers and biomolecules on surfaces using enhanced sampling methods. MRS Proceedings, Vol.1470 . ISSN 1946-4274

O'Brien, Paul A. C., Allen, M. P. , Cheung, David L., Dennison, M. (Matthew) and Masters, Andrew. (2011) Elastic constants of hard thick platelets by Monte Carlo simulation and virial expansion. Soft Matter, Vol.7 (No.1). pp. 153-162. ISSN 1744-683X

Swetnam, Adam D. and Allen, M. P. . (2010) Improving the Wang-Landau algorithm for polymers and proteins. Journal of Computational Chemistry, Volume 32 (Number 5). pp. 816-821. ISSN 0192-8651

Allen, M. P. (2009) Molecular simulation methods for soft matter. In: 10th Granada Seminar: Modeling and Simulation of New Materials, Univ Granada, Fac Ciencias, Granada, Spain, 15-19 Sep 2008. Published in: AIP Conference Proceedings, Vol.1091 (No.1). pp. 1-43.

Dennison, M. (Matthew), Masters, Andrew J., Cheung, David L. and Allen, M. P. . (2009) Calculation of direct correlation function for hard particles using a virial expansion. Molecular Physics, Vol.107 (No.4-6). pp. 375-382. ISSN 0026-8976

Swetnam, Adam D. and Allen, M. P. . (2009) Improved simulations of lattice peptide adsorption. Physical Chemistry Chemical Physics, Vol.11 (No.12). pp. 2046-2055. ISSN 1463-9076

O'Brien, Paul A. C., Allen, M. P. , Cheung, David L., Dennison, M. (Matthew) and Masters, Andrew J.. (2008) Elastic constants of hard thin platelets by Monte Carlo simulation and virial expansion. Physical Review E, Vol.78 (No.5). 051705. ISSN 1539-3755

Cheung, David L., Anton, Lucian, Allen, M. P. , Masters, Andrew J., Phillips, J. (Jonathan) and Schmidt, M. (Matthias). (2008) Structure and stability of isotropic states of hard platelet fluids. Physical Review E, Vol.78 (No.4). 041201. ISSN 1539-3755

Cheung, David L. and Allen, M. P.. (2008) Effect of substrate geometry on liquid-crystal-mediated nanocylinder-substrate interactions. Journal of Chemical Physics, Vol.129 (No.11). p. 114706. ISSN 0021-9606

Cheung, David L., Anton, Lucian, Allen, Michael P. and Masters, Andrew J. (2008) Computer simulation of liquids and liquid crystals. In: Conference on Computational Physics, Brussels, Belgium, 5th-8th Sep 2007. Published in: Computer Physics Communications, Vol.179 (No.1-3). pp. 61-65.

Smiatek, J., Allen, M. P. and Schmid, F.. (2008) Tunable-slip boundaries for coarse-grained simulations of fluid flow. European Physical Journal E. Soft Matter, Vol.26 (No.1-2). pp. 115-122. ISSN 1292-8941

Cheung, David L. and Allen, M. P. . (2008) Forces between cylindrical nanoparticles in a liquid crystal. Langmuir, Vol.24 (No.4). pp. 1411-1417. ISSN 0743-7463

Tupitsyna, A. I., Darinskii, Anatoly A., Emri, Igor and Allen, M. P. . (2008) Computer simulation of anisotropic polymer brushes. Soft Matter, Vol.4 (No.1). pp. 108-121. ISSN 1744-683X

Cheung, David L., Anton, Lucian, Allen, M. P. and Masters, Andrew J.. (2008) Structure of molecular liquids : hard rod-disk mixtures. Physical Review E, Vol.77 (No.1). 011202. ISSN 1539-3755

Cheung, David L. and Allen, Michael P.. (2007) Liquid-crystal-mediated force between a cylindrical nanoparticle and substrate. Physical Review E, Vol. 76 (No.4 Part 1). ISSN 1539-3755

Cheung, David L., Anton, Lucian, Allen, Michael P. and Masters, Andrew J.. (2007) Structure of molecular liquids: Closure relations for hard spheroids. Physical Review E, Vol.76 (No.4 Part 1). ISSN 1539-3755

Darinskii, A. A., Tupitsyna, A. I., Allen, M. P. and Emri, I.. (2007) Liquid crystal transitions induced by spherical particles in anisotropic polymer brushes: molecular dynamics simulation. Polymer Science Series A, Vol.49 (No.8). pp. 944-959. ISSN 0965-545X

Allen, Michael P. (2007) Educational aspects of molecular simulation. In: 3rd International Conference on Foundations of Molecular Modeling and Simulation (FOMMS), Blaine, WA, JUL 09-14, 2006. Published in: MOLECULAR PHYSICS, 105 (2-3). pp. 157-166.

Allen, Michael P. and Schmid, Friederike (2007) A thermostat for molecular dynamics of complex fluids. In: Symposium on Progress and Future Prospects in Molecular Dynamics Simulation, Keio Univ, Yokohama, JAPAN, JUN 06-08, 2006. Published in: MOLECULAR SIMULATION, 33 (1-2). pp. 21-26.

Allen, Michael P. and Germano, Guido. (2006) Expressions for forces and torques in molecular simulations using rigid bodies. MOLECULAR PHYSICS, 104 (20-21). pp. 3225-3235. ISSN 0026-8976

Cheung, David L. and Allen, Michael P.. (2006) Structure of a liquid crystalline fluid around a macroparticle: Density functional theory. PHYSICAL REVIEW E, 74 (2 Part 1). -. ISSN 1539-3755

Allen, Michael P.. (2006) Evaluation of pressure tensor in constant-volume simulations of hard and soft convex bodies. JOURNAL OF CHEMICAL PHYSICS, 124 (21). -. ISSN 0021-9606

Cheung, David L., Anton, Lucian, Allen, Michael P. and Masters, Andrew J.. (2006) Structure of molecular liquids: Cavity and bridge functions of the hard spheroid fluid. PHYSICAL REVIEW E, 73 (6 Part 1). -. ISSN 1539-3755

Allen, M. P. . (2005) Spin dynamics for the Lebwohl-Lasher model. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.72 (No.3). ISSN 1539-3755

Downton, M.T. and Allen, M. P. . (2004) Computer simulation of liquid-crystal surface modification. Europhysics Letters, Vol.65 (No.1). pp. 48-54. ISSN 0295-5075

Andrienko, D., Tasinkevych, M., Patrício, P., Allen, M. P. and Telo da Gama, M. M. . (2003) Forces between elongated particles in a nematic colloid. Physical Review Letters, Vol.68 (No.5). ISSN 0031-9007

West, John L., Glushchenko, Anatoliy, Liao, Guangxun, Reznikov, Yuriy, Andrienko, Denis and Allen, M. P. . (2002) Drag on particles in a nematic suspension by a moving nematic-isotropic interface. Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol.66 (No.1). ISSN 1539-3755

Germano, Guido, Allen, M. P. and Masters, Andrew J.. (2002) Simultaneous calculation of the helical pitch and the twist elastic constant in chiral liquid crystals from intermolecular torques. Journal of Chemical Physics, Vol.116 (No.21). pp. 9422-9430. ISSN 0021-9606

Andrienko, Denis and Allen, M. P. . (2000) Molecular simulation and theory of a liquid crystalline disclination core. Physical Review E, Vol.61 (No.1). pp. 504-510. ISSN 1063-651X