
The Library
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Number of items: 175.
2023
Nyagwange, James, Kutima, Bernadette, Mwai, Kennedy, Karanja, Henry K., Gitonga, John N., Mugo, Daisy, Sein, Yiakon, Wright, Daniel, Omuoyo, Donwilliams O., Nyiro, Joyce U. et al.
(2023)
Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro.
International Journal of Infectious Diseases, 127
.
pp. 11-16.
doi:10.1016/j.ijid.2022.11.041
2022
Wambua, James, Munywoki, Patrick K., Coletti, Pietro, Nyawanda, Bryan O., Murunga, Nickson, Nokes, D. James and Hens, Niel (2022) Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal Kenya. PLOS ONE, 17 (11). e0278066. doi:10.1371/journal.pone.0278066
Carbonell-Estrany, Xavier, Simões, Eric A. F., Bont, Louis J., Gentile, Angela, Homaira, Nusrat, Scotta, Marcelo Comerlato, Stein, Renato T., Torres, Juan P., Sheikh, Jarju, Broor, Shobha et al.
(2022)
Identifying the research, advocacy, policy and implementation needs for the prevention and management of respiratory syncytial virus lower respiratory tract infection in low- and middle-income countries.
Frontiers in Pediatrics, 10
.
1033125.
doi:10.3389/fped.2022.1033125
Tegally, Houriiyah, San, James E., Cotten, Matthew, Moir, Monika, Tegomoh, Bryan, Mboowa, Gerald, Martin, Darren P., Baxter, Cheryl, Lambisia, Arnold W., Diallo, Amadou et al.
(2022)
The evolving SARS-CoV-2 epidemic in Africa : insights from rapidly expanding genomic surveillance.
Science, 378
(6615).
eabq5358.
doi:10.1126/science.abq5358
Hilton, Joe, Riley, Heather L., Pellis, Lorenzo, Aziza, Rabia, Brand, Samuel P. C., Kombe, Ivy K., Ojal, John, Parisi, Andrea, Keeling, Matt J., Nokes, D. James, Manson-Sawko, Robert and House, Thomas A. (2022) A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic. PLoS Computational Biology, 18 (9). e1010390. doi:10.1371/journal.pcbi.1010390
Agoti, Charles N., Curran, Martin D., Murunga, Nickson, Ngari, Moses, Muthumbi, Ester, Lambisia, Arnold, Frost, Simon D. W., Blacklaws, Barbara, Nokes, D. James and Drumright, Lydia N. (2022) Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya. Gut Pathogens, 14 . 32. doi:10.1186/s13099-022-00506-z
Orangi, Stacey, Ojal, John, Brand, Samuel P. C., Orlendo, Cameline, Kairu, Angela, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M., Uyoga, Sophie et al.
(2022)
Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya.
BMJ Global Health, 7
(8).
e009430.
doi:10.1136/bmjgh-2022-009430
Morobe, John Mwita, Pool, Brigitte, Marie, Lina, Didon, Dwayne, Lambisia, Arnold W., Makori, Timothy, Mohammed, Khadija Said, de Laurent, Zaydah R., Ndwiga, Leonard, Mburu, Maureen W. et al.
(2022)
Genomic epidemiology of SARS-CoV-2 in Seychelles, 2020–2021.
Viruses, 14
(6).
1318.
doi:10.3390/v14061318
Agoti, Charles N., Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W., de Laurent, Zaydah R., Morobe, John M. , Mburu, Maureen W., Omuoyo, Donwilliams O., Ongera, Edidah M. et al.
(2022)
Transmission networks of SARS-CoV-2 in coastal Kenya during the first two waves : a retrospective genomic study.
eLife, 11
.
e71703.
doi:10.7554/eLife.71703
Respiratory Virus Global Epidemiology Network, RESCEU investigators (Including: Nokes, D. James). (2022) Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019 : a systematic analysis. The Lancet, 399 (10340). pp. 2047-2064. doi:10.1016/S0140-6736(22)00478-0
Wangui, J., Nokes, D. James, Mobegi, V., Otieno, J. R., Agoit, C. N., Ngeranwa, J. N. and Bulimo, W. (2022) Spatial-temporal distribution and sequence diversity of Group A human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype. Influenza and Other Respiratory Viruses, 16 (3). pp. 501-510. doi:10.1111/irv.12948
Nyiro, Joyce U., Bukusi, Elizabeth, Mwaengo, Dufton, Nyaguara, Amek, Nyawanda, Bryan, Otieno, Nancy, Bigogo, Godfrey, Murunga, Nickson, Widdowson, Marc-Alain, Verani, Jennifer R., Chaves, Sandra S., Mwangudza, Hope, Odundo, Calleb, Berkley, James A., Nokes, D. James and Munywoki, Patrick K. (2022) Efficiency of transplacental transfer of respiratory syncytial virus (RSV) specific antibodies among pregnant women in Kenya. Wellcome Open Research, 7 . 43. doi:10.12688/wellcomeopenres.17636.2
Nyagwange, James, Ndwiga, Leonard, Muteru, Kelvin, Wamae, Kevin, Tuju, James, testing team, COVID, Kutima, Bernadette, Gitonga, John, Karanja, Henry, Mugo, Daisy et al.
(2022)
Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya [version 1; peer review: 2 approved].
Wellcome Open Research, 7
.
p. 69.
doi:10.12688/wellcomeopenres.17661.1
Lambisia, Arnold W., Mohammed, Khadija S., Makori, Timothy O., Ndwiga, Leonard, Mburu, Maureen W., Morobe, John M. , Moraa, Edidah O., Musyoki, Jennifer, Murunga, Nickson, Mwangi, Jane N., Nokes, D. James, Agoti, Charles N., Ochola-Oyier, Lynette Isabella and Githinji, George (2022) Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol. Frontiers in Medicine, 9 . 836728. doi:10.3389/fmed.2022.836728
Phan, My V. T., Agoti, Charles N., Munywoki, Patrick K., Otieno, Grieven Paul, Ngama, Mwanajuma, Kellam, Paul, Cotton, Matthew and Nokes, D. James (2022) Identification of missed respiratory viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Scientific Reports, 12 . 202. doi:10.1038/s41598-021-03987-1
Etyang, Anthony O., Lucinde, Ruth, Karanja, Henry, Kalu, Catherine, Mugo, Daisy, Nyagwange, James, Gitonga, John, Tuju, James, Wanjiku, Perpetual, Karani, Angela et al.
(2022)
Seroprevalence of antibodies to SARS-CoV-2 among health care workers in Kenya.
Clinical Infectious Diseases, 74
(2).
pp. 288-293.
doi:10.1093/cid/ciab346
2021
Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James and Munywoki, Patrick K. (2021) Infection patterns of endemic human coronaviruses in rural households in coastal Kenya [version 1; peer review: 1 approved, 2 approved with reservations]. Wellcome Open Research, 6 . 27. doi:10.12688/wellcomeopenres.16508.1
Morobe, John Mwita, Kamau, Everlyn, Murunga, Nickson, Gatua, Winfred, Luka, Martha M., Lewa, Clement, Cheruiyot, Robinson, Mutunga, Martin, Odundo, Calleb, Nokes, D. James and Agoti, Charles N. (2021) Trends and intensity of Rhinovirus invasions in Kilifi, coastal Kenya, over a 12-year period, 2007–2018. Open Forum Infectious Diseases, 8 (12). ofab571. doi:10.1093/ofid/ofab571
Mousa, Andria, Winskill, Peter, Watson, Oliver J., Ratmann, Oliver, Monod, Mélodie, Ajelli, Marco, Diallo, Aldiouma, Dodd, Peter J., Grijalva, Carlos G., Kiti, Moses Chapa et al.
(2021)
Social contact patterns and implications for infectious disease transmission : a systematic review and meta-analysis of contact surveys.
eLife, 10
.
e70294.
doi:10.7554/eLife.70294
Del Fava, Emanuele, Adema, Irene, Kiti, Moses C., Poletti, Piero, Merler, Stefano, Nokes, D. James, Manfredi, Piero and Melegaro, Alessia (2021) Individual’s daily behaviour and intergenerational mixing in different social contexts of Kenya. Scientific Reports, 11 (1). 21589. doi:10.1038/s41598-021-00799-1
Bottomley, C., Otiende, M., Uyoga, S., Gallagher, K., Kagucia, E. W., Etyang, A. O., Mugo, D., Gitonga, J., Karanja, H., Nyagwange, J., Adetifa, I. M. O., Agweyu, A., Nokes, D. J., Warimwe, G. M. and Scott, J. A. G. (2021) Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. Nature Communications, 12 . 6196. doi:10.1038/s41467-021-26452-z
Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E., Lessells, Richard, Cuadros, Diego, Martin, Darren P., Rasmussen, David A., Zekri, Abdel-Rahman N., Sangare, Abdoul K. et al.
(2021)
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
Science, 374
(6566).
pp. 423-431.
doi:10.1126/science.abj4336
Brand, Samuel, Ojal, John, Aziza, Rabia, Were, Vincent, Okiro, Emelda A., Kombe, Ivy K, Mburu, Caroline, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
COVID-19 transmission dynamics underlying epidemic waves in Kenya.
Science, 374
(6570).
pp. 989-994.
doi:10.1126/science.abk0414
Owuor, D. Collins, de Laurent, Zaydah R., Kikwai, Gilbert K., Mayieka, Lillian M., Ochieng, Melvin, Müller, Nicola F., Otieno, Nancy A., Emukule, Gideon O., Hunsperger, Elizabeth A., Garten, Rebecca, Barnes, John R., Chaves, Sandra S., Nokes, D. James and Agoti, Charles N. (2021) Characterizing the countrywide epidemic spread of influenza A(H1N1)pdm09 virus in Kenya between 2009 and 2018. Viruses, 13 (10). e1956. doi:10.3390/v13101956
RSV GOLD collaborators (Including:
Mazur, Natalie I., Löwensteyn, Yvette N., Willemsen, Joukje E., Gill, Christopher J., Forman, Leah, Mwananyanda, Lawrence M., Blau, Dianna M., Breiman, Robert F., Madhi, Shabir A., Mahtab, Sana et al.
).
(2021)
Global respiratory syncytial virus–related infant community deaths.
Clinical Infectious Diseases, 73
(Supplement 3).
S229-S237.
doi:10.1093/cid/ciab528
Awori, Juliet O., Kamau, Alice, Morpeth, Susan, Kazungu, Sidi, Silaba, Micah, Sande, Joyce, Karani, Angela, Nyongesa, Sammy, Mwarumba, Salim, Musyimi, Robert et al.
(2021)
The etiology of pneumonia in HIV-uninfected children in Kilifi, Kenya : findings from the pneumonia etiology research for child health (PERCH) Study.
The Pediatric infectious disease journal, 40
(9S).
S29-S39.
doi:10.1097/INF.0000000000002653
Luka, Martha M., Kamau, Everlyn, de Laurent, Zaydah R., Morobe, John Mwita, Alii, Leonard K., Nokes, D. James and Agoti, Charles N. (2021) Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018. Wellcome Open Research, 6 . 178. doi:10.12688/wellcomeopenres.16911.1
Githinji, George , de Laurent, Zaydah R. , Mohammed, Khadija Said , Omuovo, Donwilliams O. , Macharia, Peter M. , Morobe, John M. , Otieno, Edward , Kinyanjui, Samson M. , Agweyu, Ambrose, Maitha, Eric et al.
(2021)
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya.
Nature Communications, 12
.
4809 .
doi:10.1038/s41467-021-25137-x
Parisi, Andrea, Brand, Samuel, Hilton, Joe, Aziza, Rabia, Keeling, Matt J. and Nokes, D. James (2021) Spatially resolved simulations of the spread of COVID-19 in three European countries. PLOS Computational Biology, 17 (7). e1009090. doi:10.1371/journal.pcbi.1009090
FLU GOLD study group (Including: Löwensteyn, Yvette N., Nair, Harish, Nunes, Marta C., van Roessel, Ichelle, Vernooij, Femke S., Willemsen, Joukje, Bont, Louis J. and Mazur, Natalie I.). (2021) Estimated impact of maternal vaccination on global paediatric influenza-related in-hospital mortality : a retrospective case series. eClinicalMedicine, 37 . 100945. doi:10.1016/j.eclinm.2021.100945
Salimi, Vahid, Viegas, Mariana, Trento, Alfonsina, Agoti, Charles N., Anderson, Larry J., Avadhanula, Vasanthi, Bahl, Justin, Bont, Louis, Brister, J. Rodney, Cane, Patricia A. et al.
(2021)
Proposal for Human Respiratory Syncytial Virus (HRSV) nomenclature below the species level.
Emerging Infectious Diseases , 27
(6).
pp. 1-9.
doi:10.3201/eid2706.204608
Oketch, John W., Everlyn, Everlyn, Otieno, James R., Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James and Agoti, Charles N. (2021) Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014. Virology Journal, 18 (1). 104. doi:10.1186/s12985-021-01570-8
Ojal, John, Brand, Samuel P. C., Were, Vincent, Okiro, Emelda A., Kombe, Ivy K., Mburu, Caroline, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data.
Wellcome Open Research, 6
.
127.
doi:10.12688/wellcomeopenres.16748.3
Lambisia, Arnold W., Phan, My V. T., de Laurent, Zaydah R., Cotten, Matthew, Nokes, D. James and Agoti, Charles N. (2021) Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019. Microbiology Resource Announcements, 10 (15). e00162-21. doi:10.1128/MRA.00162-21
Oketch, John W., Kamau, Everlyn, Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James and Agoti, Charles N. (2021) Data for Comparative analysis of spatial-temporal patterns of human metapneumovirus (HMPV) and respiratory syncytial virus (RSV) in Africa using genetic data. [Dataset]
Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy C., Mutunga, Martin, Medley, Graham F., Nokes, D. James and Munywoki, Patrick K. (2021) Data for Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. [Dataset]
Ojal, John, Brand, Samuel, Were, Vincent, Okiro, Emelda A., Kombe, Ivy K., Mburu, Caroline, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
Data for Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data.
[Dataset]
Kamau, Everlyn, Otieno, James R., Lewa, Clement S., Mwema, Anthony, Murunga, Nickson, Nokes, D. James and Agoti, Charles N. (2021) Respiratory Syncytial Virus genotype BA in Kilifi, Kenya : evolutionary dynamics, 15 years on. [Dataset]
Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O. and Nokes, D. James (2021) Data for Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. [Dataset]
Rose, Erica Billig, Nyawanda, Bryan O., Munywoki, Patrick K., Murunga, Nickson, Bigogo, Godfrey M., Otieno, Nancy A., Onyango, Clayton, Chaves, Sandra S., Verani, Jennifer R., Emukule, Gideon O. , Widdowson, Marc‐Alain, Nokes, D. James, Gerber, Susan I. and Langley, Gayle E. (2021) Respiratory syncytial virus seasonality in three epidemiological zones of Kenya. Influenza and Other Respiratory Viruses, 15 (2). pp. 195-201. doi:10.1111/irv.12810
Mburu, C. N., Ojal, J., Chebet, R., Akech, D., Karia, B., Tuju, J., Sigilai, A., Abbas, K., Jit, M., Funk, S., Smits, G., van Gageldonk, P. G. M., van der Klis , F. R. M., Tabu, C., Nokes, D. James, LSHTM CMMID COVID19 Working Group, , Scott, J. A. G., Flasche, S. and Adetifa, I. M. O. (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC Medicine, 19 . 35. doi:10.1186/s12916-021-01906-9
Kombe, Ivy K., Agoti, Charles N., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James and Medley, Graham (2021) Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission. Scientific Reports, 11 . 1463. doi:10.1038/s41598-021-81078-x
Wang, Xin, Li, You, Deloria-Knoll, Maria, Madhi, Shabir A., Cohen, Cheryl, Ali, Asad, Basnet, Sudha, Bassat, Quique, Brooks, W. Abdullah, Chittaganpitch, Malinee et al.
(2021)
Global burden of acute lower respiratory infection associated with human metapneumovirus in children under five years for 2018 : a systematic review and modelling study.
Lancet Global Health, 9
(1).
E33-E43.
doi:10.1016/S2214-109X(20)30393-4
2020
Kamau, Everlyn , Otienoa, James R, Lewa, Clement S., Mwema , Anthony , Murunga, Nickson , Nokes, D. James and Agoti , Charles N. (2020) Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on. Scientific Reports, 10 . 21176 . doi:10.1038/s41598-020-78234-0
Mwanga, Mike J., Verani, Jennifer R., Omore, Richard, Tate, Jacqueline E., Parashar, Umesh D., Murunga, Nickson, Gicheru, Elijah, Breiman, Robert F., Nokes, D. James and Agoti, Charles N. (2020) Multiple introductions and predominance of 3 rotavirus group A genotype G3P[8] in Kilifi, coastal Kenya, 4 years after nationwide vaccine introduction. Pathogens, 9 (12). 981. doi:10.3390/pathogens9120981
Nyiro, Joyce U., Bukusi, Elizabeth, Mwaengo, Dufton, Walumbe, David, Nyaguara, Amek, Nyawanda, Bryan, Otieno, Nancy, Berkley, James A., Munywoki, Patrick and Nokes, D. James (2020) Implications of gestational age at antenatal care attendance on the successful implementation of a maternal respiratory syncytial virus (RSV) vaccine program in coastal Kenya. BMC Public Health, 20 (1). 1723. doi:10.1186/s12889-020-09841-9
Luka, Martha M., Kamau, Everlyn, Adema, Irene, Munywoki, Patrick K., Otieno, Grieven P., Gicheru, Elijah, Gichuki, Alex, Kibinge, Nelson, Agoti, Charles N. and Nokes, D. James (2020) Molecular epidemiology of human rhinovirus from one-year surveillance within a school setting in rural coastal Kenya. Open Forum Infectious Diseases, 7 (10). ofaa385. doi:10.1093/ofid/ofaa385
Mweu, Marshal M., Murunga, Nickson, Otieno, Juliet W. and Nokes, D. James (2020) Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya. Wellcome Open Research, 5 . 155. doi:10.12688/wellcomeopenres.16067.1
Adema, Irene Wangwa, Kamau, Everlyn, Nyiro, Joyce Uchi, Otieno, Grieven P., Lewa, Clement, Munywoki, Patrick K. and Nokes, D. James (2020) Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. Wellcome Open Research, 5 . 63. doi:10.12688/wellcomeopenres.15703.2
Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O. and Nokes, D. James (2020) Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya. Wellcome Open Research, 5 . 150. doi:10.12688/wellcomeopenres.16037.2
Wagner, Moritz, Kombe, Ivy K., Kiti, Moses Chapa, Aziza, Rabia, Barasa, Edwine and Nokes, D. James (2020) Using contact data to model the impact of contact tracing and physical distancing to control the SARS-CoV-2 outbreak in Kenya [version 1; peer review: 1 approved, 1 approved with reservations]. Wellcome Open Research, 5 . 212. doi:10.12688/wellcomeopenres.16264.1
RSV GOLD Study Group (Including: Löwensteyn, Yvette N., Phijffer, Emily W. E. M., Simons, Juliette V. L., Scheltema, Nienke M., Mazur, Natalie I., Nair, Harish and Bont, Louis J.). (2020) Respiratory syncytial virus-related death in children with Down Syndrome. Pediatric Infectious Disease Journal, 39 (8). pp. 665-670. doi:10.1097/INF.0000000000002666
Mwanga, Mike J., Owor , Betty E., Ochieng , John B., Ngama , Mwanajuma H., Ogwel , Billy , Onyango, Clayton , Juma , Jane , Njeru, Regina, Gicheru, Elijah, Oteno, Grieven P. et al.
(2020)
Rotavirus group : a genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
BMC Infectious Diseases, 20
.
504.
doi:10.1186/s12879-020-05230-0
Nyasimi, Festus M., Owuor, D. Collins, Ngoi, Joyce M., Mwihuri, Alexander G., Otieno, Grieven P., Otieno, James R., Githinji, George, Nyiro, Joyce U., Nokes, D. James and Agoti, Charles N. (2020) Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season. Virus Evolution, 6 (2). veaa045. doi:10.1093/ve/veaa045
Kamau, Everlyn, Otieno, James R., Murunga, Nickson, Oketch, John W., Ngoi, Joyce M., de Laurent, Zaydah R., Mwema, Anthony, Nyiro, Joyce U., Agoti, Charles N. and Nokes, D. James (2020) Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. Virus Evolution, 6 (2). veaa050. doi:10.1093/ve/veaa050
Khagayi, Sammy, Omore, Richard, Otieno, Grieven P., Ogwel, Billy, Ochieng, John B., Juma, Jane, Apondi, Evans, Bigogo, Godfrey, Onyango, Clayton, Ngama, Mwanajuma et al.
(2020)
Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children.
Clinical Infectious Diseases, 70
(11).
pp. 2298-2305.
doi:10.1093/cid/ciz664
Otieno, G. P., Bottomley, C., Khagayi, S., Adetifa, I., Ngama, M., Omore, R., Ogwel, B., Owor, B. E., Bigogo, G., Ochieng, J. B. et al.
(2020)
Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya : a controlled interrupted time series analysis.
Clinical Infectious Diseases, 70
(11).
pp. 2306-2313.
doi:10.1093/cid/ciz912
Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S. and Nokes, D. James (2020) Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. Influenza and Other Respiratory Viruses, 14 (3). pp. 320-330. doi:10.1111/irv.12717
Kinyanjui, Timothy, Pan-Ngum, Wirichada, Saralamba, Sompob, Taylor, Sylvia, White, Lisa J. and Nokes, D. James (2020) Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting. Vaccine: X, 4 . 100055. doi:10.1016/j.jvacx.2020.100055
Brand, Samuel, Munywoki, Patrick, Walumbe, David, Keeling, Matthew James and Nokes, D. James (2020) Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households. eLife, 9 . e47003. doi:10.7554/eLife.47003
Kamau, Everlyn, Otieno, James Richard, Murunga, Nickson, Oketch, John W., Ngoi, Joyce M., de Laurent, Zaydah R., Mwema, Anthony, Nyrio, Joyce U., Agoti, Charles N. and Nokes, D. James (2020) Data for Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. [Dataset]
Adema, Irene Wangwa, Kamau, Everlyn, Nyiro, Joyce Uchi, Otieno, Grieven P., Lewa, Clement, Munywoki, Patrick K. and Nokes, D. James (2020) Data for Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. [Dataset]
Kamau, Everlyn, Oketch, John W., de Laurent, Zaydah R., Phan, My V. T., Agoti, Charles N., Nokes, D. James and Cotton, Matthew (2020) Whole genome sequencing and phylogenetic analysis of Human metapneumovirus strains from Kenya and Zambia. BMC Genomics, 21 (5). doi:10.1186/s12864-019-6400-z
Abidha, C., Nyiro, J., Kamau, E., Abdullahi, O., Nokes, D. James and Agoti, C. N. (2020) Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-2016. Virus Evolution, 6 (1). veaa031. doi:10.1093/ve/veaa031
2019
Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N. and Nokes, D. James (2019) Genome sequences of human coronavirus OC43 and NL63, associated with respiratory infections in Kilifi, Kenya. Microbiology Resource Announcements, 8 (46). e00730-19. doi:10.1128/MRA.00730-19
Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N. and Nokes, D. James (2019) Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007–2016. BMC Infectious Diseases, 19 (1). 757. doi:10.1186/s12879-019-4381-9
Kiti, Moses Chapa, Melegaro, Alessia, Cattuto, Ciro and Nokes, D. James (2019) Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors. Wellcome Open Research, 4 . p. 84. doi:10.12688/wellcomeopenres.15268.2
Li, You, Reeves, Rachel M, Wang, Xin, Bassat, Quique, Brooks, W Abdullah, Cohen, Cheryl, Moore, David P, Nunes, Marta, Rath, Barbara, Campbell, Harry et al.
(2019)
Global patterns in monthly activity of influenza virus, respiratory syncytial virus, parainfluenza virus, and metapneumovirus : a systematic analysis.
The Lancet Global Health, 7
(8).
e1031-e1045.
doi:10.1016/S2214-109X(19)30264-5
Agoti, Charles N., Phan, My V. T., Munywoki, Patrick K., Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotton, Matthew and Nokes, D. James (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9 . 10076. doi:10.1038/s41598-019-46509-w
Kombe, Ivy K., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James and Medley, Graham (2019) Model-based estimates of transmission of respiratory syncytial virus within households. Epidemics, 27 . pp. 1-11. doi:10.1016/j.epidem.2018.12.001
Sand, Charles, Njunge, James, Mwongeli, Joyce, Mutunga, Martin, Chege, Timothy, Gicheru, Elijah, Gardiner, Elizabeth, Gwela, Agnes, Drysdale, Simon, Green, Christopher, Berkley, James, Nokes, D. James and Pollard, Andrew J. (2019) Airway response to respiratory syncytial virus has incidental antibacterial effects. Nature Communications, 10 (1). 2218. doi:10.1038/s41467-019-10222-z
Brand, Samuel, Munywoki, Patrick K., Walumbe, David, Keeling, Matthew James and Nokes, D. James (2019) Data for Reducing RSV hospitalisation in a lower-income country by vaccinating mothers-to-be and their households. [Dataset]
Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James and Munywoki, P. K. (2019) An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7). pp. 1049-1057. doi:10.1093/infdis/jiy621
Nyiro, Joyce, Kiyuka, Patience K., Mutunga, Martin N., Sande, Charles J., Munywoki, Patrick K., Scott, J. Anthony G. and Nokes, D. James (2019) Agreement between ELISA and plaque reduction neutralisation assay in detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya. Wellcome Open Research, 4 . 33. doi:10.12688/wellcomeopenres.15108.1
Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M. and Dunning Hotopp, Julie C. (2019) Complete genome sequences of dengue virus type 2 strains from Kilifi, Kenya. Microbiology Resource Announcements, 8 (4). e01566-18. doi:10.1128/MRA.01566-18
2018
UNSPECIFIED (2018) Stakeholder’s technical meeting report : epidemiology and control options of respiratory syncytial virus (RSV) in the Kenyan context. KEMRI HQ / National Influenza Centre / KEMRI-Wellcome Trust Programme / KEMRI-CDC.
Morobe, John Mwita, Nyiro, Joyce, Brand, Samuel, Kamau, Everlyn, Gicheru, Elijah, Eyase, Fredrick, Otieno, Grieven, Munywoki, Patrick, Agoti, Charles and Nokes, D. James (2018) Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. Wellcome Open Research, 3 . 128. doi:10.12688/wellcomeopenres.14836.1
Morobe, John Mwita, Nyiro, Joyce U., Brand, Samuel, Kamau, Everlyn, Munywoki, Patrick K., Agoti, Charles N. and Nokes, D. James (2018) Data for Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. [Dataset]
Sande, Charles J., Mutunga, Martin, Muteti, Jacqueline, Berkley, James A., Nokes, D. James and Njunge, James (2018) Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics. Scientific Reports, 8 (1). 13814 . doi:10.1038/s41598-018-32072-3
Nyiro, Joyce Uchi, Munywoki, Patrick, Kamau, Everlyn, Agoti, Charles, Gichuki, Alex, Etyang, Timothy, Otieno, Grieven and Nokes, D. James (2018) Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. Wellcome Open Research, 3 . 89. doi:10.12688/wellcomeopenres.14662.1
Morpeth, Susan C., Munywoki, Patrick, Hammitt, Laura L., Bett, Anne, Bottomley, Christian, Onyango, Clayton O., Murdoch, David R., Nokes, D. James and Scott, J. Anthony G. (2018) Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children. Scientific Reports, 8 (1). 11030. doi:10.1038/s41598-018-29119-w
Nyiro, Joyce U., Otieno, Grieven P. and Nokes, D. James (2018) Data for Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. [Dataset]
Otieno, J. R., Kamau, E. M., Oketch, J. W., Ngoi, J. M., Gichuki, A. M., Binter, Š., Otieno, G. P., Ngama, M., Agoti, C. N., Cane, P. A., Kellam, P., Cotten, M., Lemey, P. and Nokes, D. James (2018) Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution, 4 (2). vey027. doi:10.1093/ve/vey027
Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2018) Human coronavirus NL63 molecular epidemiology and evolutionary patterns in rural coastal Kenya. The Journal of Infectious Diseases, 217 (11). pp. 1728-1739. doi:10.1093/infdis/jiy098
Munywoki, Patrick K., Koech, Dorothy C, Agoti, Charles N., Cane, Patricia A., Medley, Graham and Nokes, D. James (2018) Continuous invasion by respiratory viruses observed in rural households during a respiratory syncytial virus seasonal outbreak in coastal Kenya. Clinical Infectious Diseases, 67 (10). pp. 1559-1567. doi:10.1093/cid/ciy313
Mohammed, Khadija Said, Kibinge, Nelson, Prins, Pjotr, Agoti, Charles N., Cotten, Matthew, Nokes, D. James, Brand, Samuel and Githinji, George (2018) Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3 . 21. doi:10.12688/wellcomeopenres.13538.2
Agoti, Charles N., Munywoki, Patrick K., Cotten, Matthew and Nokes, D. James (2018) Data for Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. [Dataset]
Nyiro, Joyce U., Munywoki, Patrick K. and Nokes, D. James (2018) Data for Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. [Dataset]
Owor, Betty E., Mwanga, Mike J., Njeru, Regina, Mugo, Robert, Ngama, Mwanajuma, Otieno, Grieven P., Nokes, D. James and Agoti, C.N. (2018) Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013. Wellcome Open Research, 3 . 150. doi:10.12688/wellcomeopenres.14908.1
2017
Scheltema, Nienke M., Gentile, Angela, Lucion, Florencia, Nokes, D. James, Munywoki, Patrick K., Madhi, Shabir A., Groome, Michelle J., Cohen, Cheryl, Moyes, Jocelyn, Thorburn, Kentigern et al.
(2017)
Global respiratory syncytial virus-associated mortality in young children (RSV GOLD) : a retrospective case series.
The Lancet Global Health, 5
(10).
e984-e991.
doi:10.1016/s2214-109x(17)30344-3
Shi, Ting, McAllister, David A., O'Brien, Katherine L., Simoes, Eric A. F., Madhi, Shabir A., Gessner, Bradford D., Polack, Fernando P., Balsells, Evelyn, Acacio, Sozinho, Aguayo, Claudia et al.
(2017)
Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015 : a systematic review and modelling study.
The Lancet, 390
(10098).
pp. 946-958.
doi:10.1016/S0140-6736(17)30938-8
Flasche, Stefan, Ojal, John, Le Polain de Waroux, Olivier, Otiende, Mark, O’Brien, Katherine L., Kiti, Moses, Nokes, D. James, Edmunds, W John and Scott, J. Anthony G. (2017) Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine : a modelling study based on data from PCV10 introduction in Kilifi, Kenya. BMC Medicine, 15 (1). 113. doi:10.1186/s12916-017-0882-9
Adetifa, Ifedayo M.O., Bwanaali, Tahreni, Wafula, Jackline, Mutuku, Alex, Karia, Boniface, Makumi, Anne, Mwatsuma, Pauline, Bauni, Evasius, Hammitt, Laura L., Nokes, D. James, Maree, Ephantus, Tabu, Collins, Kamau, Tatu, Mataza, Christine, Williams, Thomas N. and Scott, J. Anthony G. (2017) Cohort profile : the Kilifi vaccine monitoring study. International Journal of Epidemiology, 46 (3). 792-792h. doi:10.1093/ije/dyw202
Nyiro, Joyce U., Kombe, Ivy K., Sande, Charles J., Kipkoech, James, Kiyuka, Patience K., Onyango, Clayton O., Munywoki, Patrick K., Kinyanjui, Timothy M. and Nokes, D. James (2017) Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. PLoS One, 12 (5). e0177803. doi:10.1371/journal.pone.0177803
Nokes, D. James and Otieno, James R. (2017) Data for Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. [Dataset]
Nokes, D. James and Kamau, Evelyn (2017) Data for Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. [Dataset]
Nokes, D. James and Otieno, James R. (2017) Data for Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010–2015. [Dataset]
Ngari, Moses M., Fegan, Greg, Mwangome, Martha K., Ngama, Mwanajuma J., Mturi, Neema, Scott, John Anthony Gerard, Bauni, Evasius, Nokes, D. James and Berkley, James A. (2017) Mortality after inpatient treatment for severe pneumonia in children : a cohort study. Paediatric and Perinatal Epidemiology, 31 (3). pp. 233-242. doi:10.1111/ppe.12348
Atkins, Katie, Baguelin, Marc, Brand, Samuel, Jit, Mark, Keeling, Matthew James, Kibinge, Nelson, Kinyanjui, Timothy, Medley, Graham, Melegaro, Alessia, Munywoki, Patrick, Nokes, D. James, Panovska-Griffiths, Jasmina, Pan-Ngum, Wurichada , Pellis, Lorenzo and White, Lisa (2017) RSV modelling meeting. University of Warwick, Coventry: School of Life Science and Zeeman Institute SBIDER Centre, University of Warwick, UK and KEMRI-Wellcome Trust Research Programme , Kilifi, Kenya. (Unpublished)
Wathuo, Miriam, Medley, Graham, Nokes, D. James and Munywoki, Patrick K. (2017) Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study. Wellcome Open Research, 1 . 27. doi:10.12688/wellcomeopenres.10284.2
Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotten, Matthew and Nokes, D. James (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3 (1). vex006. doi:10.1093/ve/vex006
Kamau, Everlyn, Agoti, Charles N., Lewa, Clement S., Oketch, John, Owor, Betty E., Otieno, Grieven P., Bett, Anne, Cane, Patricia A. and Nokes, D. James (2017) Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. Journal of clinical virology . doi:10.1016/j.jcv.2016.12.011
Otieno, James R., Kamau, Everlyn M., Agoti, Charles N., Lewa, Clement, Otieno, Grieven, Bett, Ann, Ngama, Mwanajuma, Cane, Patricia A. and Nokes, D. James (2017) Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010–2015. Emerging Infectious Diseases, 23 (2). pp. 264-271. doi:10.3201/eid2302.161149
Pan-Ngum, Wirichada, Kinyanjui, Timothy M., Kiti, Moses C., Taylor, Sylvia, Toussaint, Jean-François, Saralamba, Sompob, Van Effelterre, Thierry, Nokes, D. James and White, Lisa J. (2017) Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles : a consensus modelling approach. Vaccine, 35 (2). pp. 403-409. doi:10.1016/j.vaccine.2016.10.073
2016
Nyiro, Joyce Uchi, Sande, Charles Jumba, Mutunga, Martin, Kiyuka, Patience Kerubo, Munywoki, Patrick Kioo, Scott, John Anthony G. and Nokes, D. James (2016) Absence of association between cord specific antibody levels and severe respiratory syncytial virus (RSV) disease in early infants : a case control study from coastal Kenya. PLoS One, 11 (11). e0166706. doi:10.1371/journal.pone.0166706
Emukule, Gideon O. , Mott, Joshua A., Spreeuwenberg, Peter, Viboud, Cecile, Commanday, Alexander, Muthoka, Philip, Munywoki, Patrick K., Nokes, D. James, Velden, Koos van der and Paget, John W. (2016) Influenza activity in Kenya, 2007-2013 : timing, association with climatic factors, and implications for vaccination campaigns. Influenza and Other Respiratory Viruses, 10 (5). pp. 375-385. doi:10.1111/irv.12393
Agoti, Charles N., Kiyuka, Patience K., Kamau, Everlyn, Munywoki, Patrick K., Bett, Anne, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2016) Human Rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4 (4). pp. 1-2. e00751. doi:10.1128/genomeA.00751-16
Owor, Betty E., Masankwa, Geoffrey N., Mwango, Lilian C., Njeru, Regina W., Agoti, Charles N. and Nokes, D. James (2016) Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11. BMC Infectious Diseases, 16 (1). doi:10.1186/s12879-016-1605-0
Kiti, Moses C., Tizzoni, Michele, Kinyanjui, Timothy M., Koech, Dorothy C., Munywoki, Patrick K., Meriac, Milosch, Cappa, Luca, Panisson, André, Barrat, Alain, Cattuto, Ciro and Nokes, D. James (2016) Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors. EPJ Data Science, 5 (1). doi:10.1140/epjds/s13688-016-0084-2
Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A. and Nokes, D. James (2016) Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Journal of Virology, 90 (10). pp. 4990-5002. doi:10.1128/JVI.03105-15
WHO RSV Vaccine Consultation Expert Group (Including: Modjarrad, Kayvon, Giersing, Birgitte, Kaslow, David C., Smith, Peter G. and Moorthy, Vasee S.). (2016) WHO consultation on Respiratory Syncytial Virus Vaccine Development Report from a World Health Organization Meeting held on 23–24 March 2015. Vaccine, 34 (2). pp. 190-197. doi:10.1016/j.vaccine.2015.05.093
2015
Hollingsworth, T. Déirdre, Langley, Ivor, Nokes, D. James, Macpherson, Eleanor E., McGivern, Gerry, Adams, Emily R., Bockarie, Moses J., Mortimer, Kevin, Reimer, Lisa J, Squire, Bertie, Torr, Stephen J. and Medley, Graham (2015) Infectious disease and health systems modelling for local decision making to control neglected tropical diseases. BMC Proceedings, 9 (Suppl 10). S6. doi:10.1186/1753-6561-9-S10-S6
Munywoki, Patrick K., Koech, Dorothy C., Agoti, Charles N., Bett, Ann, Cane, Patricia A., Medley, Graham F. and Nokes, D. James (2015) Frequent asymptomatic respiratory syncytial virus infections during an epidemic in a rural Kenyan household cohort. Journal of Infectious Diseases, 212 (11). pp. 1711-1718. doi:10.1093/infdis/jiv263
Kinyanjui, Timothy M., House, Thomas A., Kiti, Moses C., Cane, Patricia, Nokes, D. James and Medley, Graham (2015) Vaccine induced herd immunity for control of respiratory syncytial virus disease in a low-income country setting. PLoS One, 10 (9). pp. 1-16. e0138018. doi:10.1371/journal.pone.0138018
Agoti, Charles N., Otieno, James R., Ngama, Mwanajuma, Mwihuri, Alexander G., Medley, Graham, Cane, Patricia A., Nokes, D. James and Kirkegaard, K. (2015) Successive respiratory syncytial virus epidemics in local populations arise from multiple variant introductions, providing insights into virus persistence. Journal of Virology, 89 (22). pp. 11630-11642. doi:10.1128/JVI.01972-15
Agoti, Charles N., Otieno, James R., Munywoki, Patrick K., Mwihuri, Alexander G., Cane, Patricia, Nokes, D. James, Kellam, Paul, Cotten, Matthew and Perlman, S. (2015) Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. Journal of Virology, Volume 89 (Number 7). pp. 3444-3454. doi:10.1128/JVI.03391-14
Nyiro, Joyce U., Sande, Charles, Mutunga, Martin, Kiyuka, Patience K., Munywoki, Patrick K., Scott, J. Anthony G. and Nokes, D. James (2015) Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya. Vaccine, 33 (15). pp. 1797-1801. doi:10.1016/j.vaccine.2015.02.039
Poletti, Piero, Merler, Stefano, Ajelli, Marco, Manfredi, Piero, Munywoki, Patrick K., Nokes, D. James and Melegaro, Alessia (2015) Evaluating vaccination strategies for reducing infant respiratory syncytial virus infection in low-income settings. BMC Medicine, Volume 13 (Number 1). pp. 1-11. Article number 49. doi:10.1186/s12916-015-0283-x
Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Kibirige, N., Kipkoech, J., Cane, Patricia, Medley, Graham and Nokes, D. James (2015) Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiology and Infection, 143 (4). pp. 804-812. doi:10.1017/S0950268814001393
2014
Sande, Charles J., Cane, Patricia and Nokes, D. James (2014) The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants. Vaccine, Volume 32 (Number 37). pp. 4726-4729. doi:10.1016/j.vaccine.2014.05.038
Kiti, Moses Chapa, Kinyanjui, Timothy, Koech, Dorothy Chelagat, Munywoki, Patrick Kiio, Medley, Graham and Nokes, D. James (2014) Quantifying age-related rates of social contact using diaries in a rural coastal population of Kenya. PLoS One, Volume 9 (Number 8). Article number e104786. doi:10.1371/journal.pone.0104786
Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham and Nokes, D. James (2014) The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, Volume 209 (Number 11). pp. 1685-1692. doi:10.1093/infdis/jit828
Agoti, Charles N., Otieno, James R., Gitahi, Caroline W., Cane, Patricia and Nokes, D. James (2014) Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerging Infectious Diseases , Volume 20 (Number 6). pp. 950-959. doi:10.3201/eid2006.131438
Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F. and Nokes, D. James (2014) Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, Volume 14 (Number 1). Article number 178. doi:10.1186/1471-2334-14-178
2013
Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, Volume 7 (Number 6). pp. 1008-1012. doi:10.1111/irv.12131
Sande, Charles J., Mutunga, M. N., Okiro, Emelda A., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort. Journal of Medical Virology, Volume 85 (Number 11). pp. 2020-2025. doi:10.1002/jmv.23696
Sande, C. J., Mutunga, M. N., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Group- and genotype-specific neutralizing antibody responses against respiratory syncytial virus in infants and young children with severe pneumonia. Journal of Infectious Diseases, Volume 207 (Number 3). pp. 489-492. doi:10.1093/infdis/jis700
Fuller, James A., Summers, Aimee, Katz, Mark A., Lindblade, Kim A., Njuguna, Henry, Arvelo, Wences, Khagayi, Sammy, Emukule, Gideon, Linares-Perez, Nivaldo, McCracken, John, Nokes, D. James, Ngama, Mwanajuma, Kazungu, Sidi, Mott, Joshua A., Olsen, Sonja J., Widdowson, Marc-Alain and Feikin, Daniel R. (2013) Estimation of the national disease burden of influenza-associated severe acute respiratory illness in Kenya and Guatemala : a novel methodology. PLoS One, Volume 8 (Mumber 2). Article number e56882. doi:10.1371/journal.pone.0056882
Munywoki, Patrick Kiio, Ohuma, Eric O., Ngama, Mwanajuma, Bauni, Evasius, Scott, J. Anthony G. and Nokes, D. James (2013) Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children, Kenya. Emerging Infectious Diseases , Volume 19 (Number 2). pp. 223-229. doi:10.3201/eid1902.120940
Anderson, L. J., Dormitzer, P. R., Nokes, D. James, Rappuoli, R., Roca, A. and Graham, B.S. (2013) Strategic priorities for respiratory syncytial virus (RSV) vaccine development. Vaccine, Volume 31 . B209-B215. doi:10.1016/j.vaccine.2012.11.106
2012
Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann and Nokes, D. James (2012) The incidence and clinical burden of respiratory syncytial virus disease identified through hospital outpatient presentations in Kenyan children. PLoS One, Vol.7 (No.12). e52520. doi:10.1371/journal.pone.0052520
Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. doi:10.1093/infdis/jis570
van Hoek, Albert Jan, Ngama, Mwanajuma, Ismail, Amina, Chuma, Jane, Cheburet, Samuel, Mutonga, David, Kamau, Tatu and Nokes, D. James (2012) A cost effectiveness and capacity analysis for the introduction of universal rotavirus vaccination in Kenya : comparison between Rotarix and RotaTeq vaccines. PLoS One, Vol.7 (No.10). e47511. doi:10.1371/journal.pone.0047511
Webb, Clare, Ngama, Mwanajuma, Ngatia, Anthony, Shebbe, Mohammed, Morpeth, Susan, Mwarumba, Salim, Bett, Ann, Nokes, D. James, Seale, Anna C., Kazungu, Sidi, Munywoki, Patrick, Hammitt, Laura L., Scott, J Anthony G. and Berkley, James A. (2012) Treatment failure among Kenyan children with severe pneumonia--a cohort study. The Pediatric infectious disease journal, Volume 31 (Number 9). e152-e157. doi:10.1097/INF.0b013e3182638012
Gravel, Genevieve (2012) The use of a pediatric prophylactic vaccine for respiratory syncytial virus in Kenya. KEMRI-Wellcome Trust Research Programme.
Onyango, Clayton O., Welch, Stephen R., Munywoki, Patrick K., Agoti, Charles N., Bett, Ann, Ngama, Mwanajuma, Myers, Richard, Cane, Patricia and Nokes, D. James (2012) Molecular epidemiology of human rhinovirus infections in Kilifi, coastal Kenya. Journal of Medical Virology, Volume 84 (Number 5). pp. 823-831. doi:10.1002/jmv.23251
Hammitt, L. L., Kazungu, S., Morpeth, S. C., Gibson, D. G., Mvera, B., Brent, A. J., Mwarumba, S., Onyango, C. O., Bett, A., Akech, D. O., Murdoch, D. R., Nokes, D. James and Scott, J. A. G. (2012) A preliminary study of pneumonia etiology among hospitalized children in Kenya. Clinical Infectious Diseases, Vol.54 (Suppl.2). S190-S199. doi:10.1093/cid/cir1071
Onyango, Clayton O., Njeru, Regina, Kazungu, Sidi, Achilla, Rachel, Bulimo, Wallace, Welch, Stephen R., Cane, Patricia, Gunson, Rory N., Hammitt, Laura L., Scott, J. Anthony G., Berkley, James A. and Nokes, D. James (2012) Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010. Journal of Infectious Diseases, Volume 206 (Supplement 1). S61-S67. doi:10.1093/infdis/jis536
Ohuma, E. O., Okiro, E. A., Ochola, R., Sande, C. J., Cane, Patricia, Medley, Graham, Bottomley, C. and Nokes, D. James (2012) The natural history of respiratory syncytial virus in a birth cohort : the influence of age and previous infection on reinfection and disease. American Journal of Epidemiology, Vol.176 (No.9). pp. 794-802. doi:10.1093/aje/kws257
2011
Munywoki, Patrick, Hamid, Fauzat, Mutunga, Martin, Welch, Steve, Cane, Patricia and Nokes, D. James (2011) Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of Clinical Microbiology, Vol.49 (No.9). pp. 3365-3367. doi:10.1128/JCM.02231-10
Nyiro, Joyce U., Sanders, Eduard J., Ngetsa, Caroline, Wale, Steve, Awuondo, Ken, Bukusi, Elizabeth Anne, Price, Matthew A., Amornkul, Pauli N. and Nokes, D. James (2011) Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus Type 2 infection in semi-urban women in Kilifi, Kenya. BMC Infectious Diseases, Vol.11 (No.155). doi:10.1186/1471-2334-11-155
Hammitt, L. L., Kazungu, S., Welch, S. (Steve), Bett, Anne, Onyango, Clayton O., Gunson, R. N., Scott, J. Anthony G. and Nokes, D. James (2011) Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of Clinical Microbiology, Volume 49 (Number 6). pp. 2318-2320. doi:10.1128/JCM.02605-10
Moïsi, Jennifer, Gatakaa, Hellen, Berkley, James A., Maitland, Kathryn, Mturi, Neema, Newton, Charles, Njuguna, Patricia, Nokes, D. James, Ojal, John, Bauni, Evasius, Tsofa, Benjamin, Peshu, Norbert, Marsh, Kevin, Williams, Thomas and Scott, J. Anthony G. (2011) Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis. Bulletin of the World Health Organization, Vol.89 (No.10). pp. 725-732. doi:10.2471/BLT.11.089235
Moïsi, Jennifer C, Nokes, D. James, Gatakaa, Hellen, Williams, Thomas N, Bauni, Evasius, Levine, Orin S and Scott, J Anthony G (2011) Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization, Vol.89 (No.2). pp. 102-111. doi:10.2471/BLT.10.080796
Mwambi, H., Ramroop, S., White, L., Okiro, E., Nokes, D. James, Shkedy, Z. and Molenberghs, G. (2011) A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort. Statistical Methods in Medical Research , Vol.20 (No.5). pp. 551-570. doi:10.1177/0962280210385749
2010
Agoti, Charles N., Mbisa, Jean L., Bett, Ann, Medley, Graham, Nokes, D. James and Cane, Patricia (2010) Intrapatient variation of the respiratory syncytial virus attachment protein gene. Journal of Virology, Vol.84 (No.19). pp. 10425-10428. doi:10.1128/JVI.01181-10
Nair, Harish, Gessner, Bradford D., Nokes, D. James, Theodoratou, Evropi, Rudan, Igor, Madhi, Shabir A., Simoes, Eric A. F. and Campbell, Harry (2010) Childhood mortality due to respiratory syncytial virus - authors' reply. Lancet, Vol.376 (No.9744). pp. 872-873. doi:10.1016/S0140-6736(10)61410-9
Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola and Steele, Duncan (2010) Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1). S180-S186. doi:10.1086/653566
Berkley, James A., Munywoki, Patrick, Ngama, Mwanajuma, Kazungu, Sidi, Abwao, John, Bett, Anne, Lassauniere, Ria, Kresfelder, Tina, Cane, Patricia, Venter, Marietjie, Scott, J. Anthony G. and Nokes, D. James (2010) Viral etiology of severe pneumonia among Kenyan infants and children. JAMA: The Journal of the American Medical Association, Vol.303 (No.20). pp. 2051-2057. doi:10.1001/jama.2010.675
Nair, Harish, Nokes, D. James, Gessner, Bradford D., Dherani, Mukesh, Madhi, Shabir A., Singleton, Rosalyn J., O'Brien, Katherine L., Roca, Anna, Wright, Peter F., Bruce, Nigel et al.
(2010)
Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis.
The Lancet, Vol.375
(No.9725).
pp. 1545-1555.
doi:10.1016/S0140-6736(10)60206-1
Okiro, E. A., White, L. J., Ngama, Mwanajuma, Cane, Patricia, Medley, Graham and Nokes, D. James (2010) Duration of shedding of respiratory syncytial virus in a community study of Kenyan children. BMC Infectious Diseases, Vol.10 (Article 15). doi:10.1186/1471-2334-10-15
2009
Ochola, Rachel, Sande, Charles, Fegan, Greg, Scott, P. D. (Paul D.), Medley, Graham, Cane, Patricia and Nokes, D. James (2009) The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya. PLoS One, Vol.4 (No.12). e8088. doi:10.1371/journal.pone.0008088
Nokes, D. James, Ngama, Mwanajuma, Bett, Anne, Abwao, John, Munywoki, Patrick, English, M. (Mike), Scott, J. Anthony G., Cane, Patricia and Medley, Graham (2009) Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical Infectious Diseases, Vol.49 (No.9). pp. 1341-1349. doi:10.1086/606055
Anderson, Roy M., Hollingsworth, T. Déirdre and Nokes, D. James (2009) Mathematical models of transmission and control. In: Detels, Roger and Beaglehole, Robert and Gulliford, Mary Ann and Lansang, Martin, (eds.) Oxford Textbook of Public Health. Oxford ; New York: Oxford University Press. ISBN 9780199218707
Medley, Graham and Nokes, D. James (2009) Does viral diversity matter? Science, Vol.325 (No.5938). pp. 274-275. doi:10.1126/science.1177475
Ohuma, E. O., Okiro, E. A., Bett, A., Abwao, John, Were, S., Samuel, Dhan, Vyse, A. J., Gay, N. J., Brown, D. W. G. and Nokes, D. James (2009) Evaluation of a measles vaccine campaign by oral-fluid surveys in a rural Kenyan district: interpretation of antibody prevalence data using mixture models. Epidemiology and Infection, Vol.13 (No.2). pp. 227-233. doi:10.1017/S0950268808000848
2008
White, Lisa J., Buttery, J., Cooper, Ben S., Nokes, D. James and Medley, Graham (2008) Rotavirus within day care centres in Oxfordshire, UK : characterization of partial immunity. Journal of The Royal Society Interface, Vol.5 (No.29). pp. 1481-1490. doi:10.1098/rsif.2008.0115
Nokes, D. James and Cane, Patricia (2008) New strategies for control of respiratory syncytial virus infection. Current Opinion in Infectious Diseases, Vol.21 (No.6). pp. 639-643. doi:10.1097/QCO.0b013e3283184245
Nigatu, Wondatir, Samuel, Dhan, Cohen, Bernard, Cumberland, Phillippa, Lemma, Eshetu, Brown, David W. G. and Nokes, D. James (2008) Evaluation of a measles vaccine campaign in Ethiopia using oral-fluid antibody surveys. Vaccine, Vol.26 (No.37). pp. 4769-4774. doi:10.1016/j.vaccine.2008.07.005
Nokes, D. James, Abwao, John, Pamba, Allan, Peenze, Ina, Dewar, John, Maghenda, J. Kamino, Gatakaa, Hellen, Bauni, Evasius, Scott, J. Anthony G., Maitland, Kathryn and Williams, Thomas N. (2008) Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, Kenya. PL o S Medicine, Vol.5 (No.7). doi:10.1371/journal.pmed.0050153
Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann, Cane, Patricia, Medley, Graham and Nokes, D. James (2008) Factors associated with increased risk of progression to respiratory syncytial virus-associated pneumonia in young Kenyan children. Tropical Medicine & International Health, Volume 13 (Number 7). pp. 914-926. doi:10.1111/j.1365-3156.2008.02092.x
Okiro, Emelda A., Sande, Charles, Mutunga, Martin, Medley, Graham, Cane, Patricia and Nokes, D. James (2008) Identifying infections with respiratory syncytial virus by using specific immunoglobulin G (IgG) and IgA enzyme-linked immunosorbent assays with oral-fluid samples. Journal of Clinical Microbiology, Vol.46 (No.5). pp. 1659-1662. doi:10.1128/JCM.02190-07
Nokes, D. James, Okiro, Emelda A., Ngama, Mwanajuma, Ochola, Rachel, White, Lisa J., Scott, P. D. (Paul D.), English, M. (Mike), Cane, Patricia and Medley, Graham (2008) Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi district, Kenya. Clinical Infectious Diseases, Vol.46 (No.1). pp. 50-57. doi:10.1086/524019
2007
Scott, P. D. (Paul D.), Ochola, Rachel, Sande, Charles, Ngama, Mwanajuma, Okiro, Emelda A., Medley, Graham, Nokes, D. James and Cane, Patricia (2007) Comparison of strain-specific antibody responses during primary and secondary infections with respiratory syncytial virus. Journal of Medical Virology, Vol.79 (No.12). pp. 1943-1950. doi:10.1002/jmv.20999
White, L. J., Mandl, J. N., Gomes, M. G. M., Bodley-Tickell, A. T., Cane, Patricia, Perez-Brena, P., Aguilar, J. C., Siqueira, M. M., Portes, S. A., Straliotto, S. M., Waris, M., Nokes, D. James and Medley, Graham (2007) Understanding the transmission dynamics of respiratory syncytial virus using multiple time series and nested models. Mathematical Biosciences, Vol.209 (No.1). pp. 222-239. doi:10.1016/j.mbs.2006.08.018
Wilson, Jamie N., Nokes, D. James, Medley, Graham and Shouval, Daniel (2007) Mathematical model of the antibody response to hepatitis B vaccines: implications for reduced schedules. Vaccine, Vol.25 (No.18). pp. 3705-3712. doi:10.1016/j.vaccine.2007.01.012
2006
Nigatu, W., Nokes, D. James, Afework, A., Brown, D. W. G., Cutts, F. T. and Jin, L. (2006) Serological and molecular epidemiology of measles virus outbreaks reported in Ethiopia during 2000-2004. JOURNAL OF MEDICAL VIROLOGY, 78 (12). pp. 1648-1655. doi:10.1002/jmv.20750
2005
White, L. J., Waris, M., Cane, Patricia, Nokes, D. James and Medley, Graham (2005) The transmission dynamics of groups A and B human respiratory syncytial virus (hRSV) in England & Wales and Finland: seasonality and cross-protection. Epidemiology and Infection, Vol.13 (No.2). pp. 279-289. doi:10.1017/S0950268804003450
2003
Abebe, A., Nokes, D. James, Dejene, A., Enquselassie, F., Messele, T. and Cutts, Felicity (2003) Seroepidemiology of hepatitis B virus in Addis Ababa Ethiopia: transmission patterns and vaccine control. Epidemiology and Infection, Vol.13 (No.1). pp. 757-770. doi:10.1017/S0950268803008574
Enquselassie, F., Ayele, W., Dejene, A., Messele, T., Abebe, A., Cutts, Felicity and Nokes, D. James (2003) Seroepidemiology of measles in Addis Ababa Ethiopia: implications for control through vaccination. Epidemiology and Infection, Vol.13 (No.3). pp. 507-519. doi:10.1017/S0950268803008446
Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James (2003) Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2). pp. 285-291. doi:10.1017/S0950268802008051
2000
Cutts, Felicity, Abebe, A., Messele, T., Dejene, A., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James (2000) Sero-epidemiology of rubella in the urban population of Addis Ababa Ethiopia. Epidemiology and Infection, Vol.12 (No.3). pp. 467-479. doi:10.1017/S0950268899003532
Wilson, J. N., Nokes, D. James and Carman, W. (William) (2000) Predictions of the emergence of vaccine-resistant hepatitis B in The Gambia using a mathematical model. Epidemiology and Infection, Vol.124 (No.2). pp. 295-307. doi:10.1017/S0950268800003605
1998
Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo and Medley, Graham (1998) Seroepidemiology of group A rotavirus in suburban São Paulo, Brazil. Epidemiology and Infection, Vol.120 . pp. 327-334. doi:10.1017/S0950268898008759
1996
Edmunds, W. John , Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C. and Hall, A. J. (Andrew James) (1996) Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2). pp. 313-325. doi:10.1017/S0950268800001497
This list was generated on Sun Jan 29 09:14:52 2023 GMT.