Sande, Charles J., Cane, Patricia A. and Nokes, D. James. (2014) The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants. Vaccine . ISSN 0264-410X (In Press)

Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham and Nokes, D. James. (2014) The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, Volume 209 (Number 11). pp. 1685-1692. ISSN 0022-1899

Agoti, Charles N., Otieno, James R., Gitahi, Caroline W., Cane, Patricia A. and Nokes, D. James. (2014) Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerging Infectious Diseases , Volume 20 (Number 6). pp. 950-959. ISSN 1080-6059

Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F. and Nokes, D. James. (2014) Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, Volume 14 (Number 1). Article number 178. ISSN 1471-2334

Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia and Nokes, D. James. (2013) Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, Volume 7 (Number 6). pp. 1008-1012. ISSN 1750-2640

Sande, Charles J., Mutunga, M. N., Okiro, Emelda A., Medley, Graham, Cane, P. A. and Nokes, D. James. (2013) Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort. Journal of Medical Virology, Volume 85 (Number 11). pp. 2020-2025. ISSN 0146-6615

Sande, C. J., Mutunga, M. N., Medley, Graham, Cane, P. A. and Nokes, D. James. (2013) Group- and genotype-specific neutralizing antibody responses against respiratory syncytial virus in infants and young children with severe pneumonia. Journal of Infectious Diseases, Volume 207 (Number 3). pp. 489-492. ISSN 0022-1899

Fuller, James A., Summers, Aimee, Katz, Mark A., Lindblade, Kim A., Njuguna, Henry, Arvelo, Wences, Khagayi, Sammy, Emukule, Gideon, Linares-Perez, Nivaldo, McCracken, John, Nokes, D. James, Ngama, Mwanajuma, Kazungu, Sidi, Mott, Joshua A., Olsen, Sonja J., Widdowson, Marc-Alain and Feikin, Daniel R.. (2013) Estimation of the national disease burden of influenza-associated severe acute respiratory illness in Kenya and Guatemala : a novel methodology. PLoS One, Volume 8 (Mumber 2). Article number e56882. ISSN 1932-6203

Munywoki, Patrick Kiio, Ohuma, Eric O., Ngama, Mwanajuma, Bauni, Evasius, Scott, J. Anthony G. and Nokes, D. James. (2013) Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children, Kenya. Emerging Infectious Diseases , Volume 19 (Number 2). pp. 223-229. ISSN 1080-6059

Anderson, L. J., Dormitzer, P. R., Nokes, D. James, Rappuoli, R., Roca, A. and Graham, B.S.. (2013) Strategic priorities for respiratory syncytial virus (RSV) vaccine development. Vaccine, Volume 31 . B209-B215. ISSN 0264-410X

Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann and Nokes, D. James. (2012) The incidence and clinical burden of respiratory syncytial virus disease identified through hospital outpatient presentations in Kenyan children. PLoS One, Vol.7 (No.12). e52520. ISSN 1932-6203

Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James. (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. ISSN 0022-1899

van Hoek, Albert Jan, Ngama, Mwanajuma, Ismail, Amina, Chuma, Jane, Cheburet, Samuel, Mutonga, David, Kamau, Tatu and Nokes, D. James. (2012) A cost effectiveness and capacity analysis for the introduction of universal rotavirus vaccination in Kenya : comparison between Rotarix and RotaTeq vaccines. PLoS One, Vol.7 (No.10). e47511. ISSN 1932-6203

Webb, Clare, Ngama, Mwanajuma, Ngatia, Anthony, Shebbe, Mohammed, Morpeth, Susan, Mwarumba, Salim, Bett, Ann, Nokes, D. James, Seale, Anna C., Kazungu, Sidi, Munywoki, Patrick, Hammitt, Laura L., Scott, J Anthony G. and Berkley, James A.. (2012) Treatment failure among Kenyan children with severe pneumonia--a cohort study. The Pediatric infectious disease journal, Volume 31 (Number 9). e152-e157. ISSN 1532-0987

Onyango, Clayton O., Welch, Stephen R., Munywoki, Patrick K., Agoti, Charles N., Bett, Ann, Ngama, Mwanajuma, Myers, Richard, Cane, Patricia and Nokes, D. James. (2012) Molecular epidemiology of human rhinovirus infections in Kilifi, coastal Kenya. Journal of Medical Virology, Volume 84 (Number 5). pp. 823-831. ISSN 0146-6615

Hammitt, L. L., Kazungu, S., Morpeth, S. C., Gibson, D. G., Mvera, B., Brent, A. J., Mwarumba, S., Onyango, C. O., Bett, A., Akech, D. O., Murdoch, D. R., Nokes, D. James and Scott, J. A. G.. (2012) A preliminary study of pneumonia etiology among hospitalized children in Kenya. Clinical Infectious Diseases, Vol.54 (Suppl.2). S190-S199. ISSN 1058-4838

Onyango, Clayton O., Njeru, Regina, Kazungu, Sidi, Achilla, Rachel, Bulimo, Wallace, Welch, Stephen R., Cane, Patricia, Gunson, Rory N., Hammitt, Laura L., Scott, J. Anthony G., Berkley, James A. and Nokes, D. James. (2012) Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010. Journal of Infectious Diseases, Volume 206 (Supplement 1). S61-S67. ISSN 0022-1899

Ohuma, E. O., Okiro, E. A., Ochola, R., Sande, C. J., Cane, Patricia, Medley, Graham, Bottomley, C. and Nokes, D. James. (2012) The natural history of respiratory syncytial virus in a birth cohort : the influence of age and previous infection on reinfection and disease. American Journal of Epidemiology, Vol.176 (No.9). pp. 794-802. ISSN 0002-9262

Munywoki, Patrick, Hamid, Fauzat, Mutunga, Martin, Welch, Steve, Cane, Patricia and Nokes, D. James. (2011) Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of Clinical Microbiology, Vol.49 (No.9). pp. 3365-3367. ISSN 0095-1137

Nyiro, Joyce U., Sanders, Eduard J., Ngetsa, Caroline, Wale, Steve, Awuondo, Ken, Bukusi, Elizabeth Anne, Price, Matthew A., Amornkul, Pauli N. and Nokes, D. James. (2011) Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus Type 2 infection in semi-urban women in Kilifi, Kenya. BMC Infectious Diseases, Vol.11 (No.155). ISSN 1471-2334

Hammitt, L. L., Kazungu, S., Welch, S. (Steve), Bett, Anne, Onyango, Clayton O., Gunson, R. N., Scott, J. Anthony G. and Nokes, D. James. (2011) Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of Clinical Microbiology, Volume 49 (Number 6). pp. 2318-2320. ISSN 0095-1137

Moïsi, Jennifer, Gatakaa, Hellen, Berkley, James, Maitland, Kathryn, Mturi, Neema, Newton, Charles, Njuguna, Patricia, Nokes, D. James, Ojal, John, Bauni, Evasius, Tsofa, Benjamin, Peshu, Norbert, Marsh, Kevin, Williams, Thomas and Scott, J Anthony. (2011) Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis. Bulletin of the World Health Organization, Vol.89 (No.10). pp. 725-732. ISSN 0042-9686

Moïsi, Jennifer C, Nokes, D. James, Gatakaa, Hellen, Williams, Thomas N, Bauni, Evasius, Levine, Orin S and Scott, J Anthony G. (2011) Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization, Vol.89 (No.2). pp. 102-111. ISSN 0042-9686

Mwambi, H., Ramroop, S., White, L., Okiro, E., Nokes, D. James, Shkedy, Z. and Molenberghs, G.. (2011) A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort. Statistical Methods in Medical Research , Vol.20 (No.5). pp. 551-570. ISSN 0962-2802

Agoti, Charles N., Mbisa, Jean L., Bett, Ann, Medley, Graham, Nokes, D. James and Cane, Patricia. (2010) Intrapatient variation of the respiratory syncytial virus attachment protein gene. Journal of Virology, Vol.84 (No.19). pp. 10425-10428. ISSN 0022-538X

Nair, Harish, Gessner, Bradford D., Nokes, D. James, Theodoratou, Evropi, Rudan, Igor, Madhi, Shabir A., Simoes, Eric A. F. and Campbell, Harry (2010) Childhood mortality due to respiratory syncytial virus - authors' reply. Lancet, Vol.376 (No.9744). pp. 872-873. ISSN 0140-6736

Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola and Steele, Duncan. (2010) Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1). S180-S186. ISSN 0022-1899

Berkley, James A., Munywoki, Patrick, Ngama, Mwanajuma, Kazungu, Sidi, Abwao, John, Bett, Anne, Lassauniere, Ria, Kresfelder, Tina, Cane, Patricia, Venter, Marietjie, Scott, J. Anthony G. and Nokes, D. James. (2010) Viral etiology of severe pneumonia among Kenyan infants and children. JAMA: The Journal of the American Medical Association, Vol.303 (No.20). pp. 2051-2057. ISSN 0098-7484

. (2010) Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis. The Lancet, Vol.375 (No.9725). pp. 1545-1555. ISSN 0140-6736

Okiro, E. A., White, L. J., Ngama, Mwanajuma, Cane, Patricia, Medley, Graham and Nokes, D. James. (2010) Duration of shedding of respiratory syncytial virus in a community study of Kenyan children. BMC Infectious Diseases, Vol.10 (Article 15). ISSN 1471-2334

Ochola, Rachel, Sande, Charles, Fegan, Gregory, Scott, P. D. (Paul D.), Medley, Graham, Cane, Patricia and Nokes, D. James. (2009) The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya. PLoS One, Vol.4 (No.12). e8088. ISSN 1932-6203

Nokes, D. James, Ngama, Mwanajuma, Bett, Anne, Abwao, John, Munywoki, Patrick, English, M. (Mike), Scott, J. Anthony G., Cane, Patricia and Medley, Graham. (2009) Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical Infectious Diseases, Vol.49 (No.9). pp. 1341-1349. ISSN 1058-4838

Anderson, R. M., Hollingsworth, T. Déirdre and Nokes, D. James (2009) Mathematical models of transmission and control. In: Detels, Roger and Beaglehole, Robert and Gulliford, Mary Ann and Lansang, Martin, (eds.) Oxford Textbook of Public Health. Oxford ; New York: Oxford University Press. ISBN 9780199218707

Medley, Graham and Nokes, D. James (2009) Does viral diversity matter? Science, Vol.325 (No.5938). pp. 274-275. ISSN 0036-8075

Ohuma, E. O., Okiro, E. A., Bett, A., Abwao, John, Were, S., Samuel, Dhan, Vyse, A. J., Gay, N. J., Brown, D. W. G. and Nokes, D. James. (2009) Evaluation of a measles vaccine campaign by oral-fluid surveys in a rural Kenyan district: interpretation of antibody prevalence data using mixture models. Epidemiology and Infection, Vol.13 (No.2). pp. 227-233. ISSN 0950-2688

White, Lisa J., Buttery, J., Cooper, Ben S., Nokes, D. James and Medley, Graham. (2008) Rotavirus within day care centres in Oxfordshire, UK : characterization of partial immunity. Journal of The Royal Society Interface, Vol.5 (No.29). pp. 1481-1490. ISSN 1742-5689

Nokes, D. James and Cane, Patricia (2008) New strategies for control of respiratory syncytial virus infection. Current Opinion in Infectious Diseases, Vol.21 (No.6). pp. 639-643. ISSN 0951-7375

Nigatu, Wondatir, Samuel, Dhan, Cohen, Bernard, Cumberland, Phillippa, Lemma, Eshetu, Brown, David W. G. and Nokes, D. James (2008) Evaluation of a measles vaccine campaign in Ethiopia using oral-fluid antibody surveys. Vaccine, Vol.26 (No.37). pp. 4769-4774. ISSN 0264-410X

Nokes, D. James, Abwao, John, Pamba, Allan, Peenze, Ina, Dewar, John, Maghenda, J. Kamino, Gatakaa, Hellen, Bauni, Evasius, Scott, J. Anthony G., Maitland, Kathryn and Williams, Thomas N.. (2008) Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, Kenya. PL o S Medicine, Vol.5 (No.7). ISSN 1549-1277

Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann, Cane, Patricia, Medley, Graham and Nokes, D. James. (2008) Factors associated with increased risk of progression to respiratory syncytial virus-associated pneumonia in young Kenyan children. Tropical Medicine & International Health, Volume 13 (Number 7). pp. 914-926. ISSN 1360-2276

Okiro, Emelda A., Sande, Charles, Mutunga, Martin, Medley, Graham, Cane, Patricia and Nokes, D. James. (2008) Identifying infections with respiratory syncytial virus by using specific immunoglobulin G (IgG) and IgA enzyme-linked immunosorbent assays with oral-fluid samples. Journal of Clinical Microbiology, Vol.46 (No.5). pp. 1659-1662. ISSN 0095-1137

Nokes, D. James, Okiro, Emelda A., Ngama, Mwanajuma, Ochola, Rachel, White, Lisa J., Scott, P. D. (Paul D.), English, M. (Mike), Cane, Patricia and Medley, Graham. (2008) Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi district, Kenya. Clinical Infectious Diseases, Vol.46 (No.1). pp. 50-57. ISSN 1058-4838

Nokes, D. James, Okiro, E. A., Ngama, M., Ochola, R., White, L. J., Scott, P. D. (Paul D.), English, M., Cane, P. A. and Medley, Graham. (2008) Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi district, Kenya. Clinical Infectious Diseases, Vol.46 (No.1). pp. 50-57. ISSN 1058-4838

Scott, P. D. (Paul D.), Ochola, Rachel, Sande, Charles, Ngama, Mwanajuma, Okiro, Emelda A., Medley, Graham, Nokes, D. James and Cane, Patricia. (2007) Comparison of strain-specific antibody responses during primary and secondary infections with respiratory syncytial virus. Journal of Medical Virology, Vol.79 (No.12). pp. 1943-1950. ISSN 0146-6615

White, L. J., Mandl, J. N., Gomes, M. G. M., Bodley-Tickell, A. T., Cane, P. A., Perez-Brena, P., Aguilar, J. C., Siqueira, M. M., Portes, S. A., Straliotto, S. M., Waris, M., Nokes, D. James and Medley, Graham. (2007) Understanding the transmission dynamics of respiratory syncytial virus using multiple time series and nested models. Mathematical Biosciences, Vol.209 (No.1). pp. 222-239. ISSN 0025-5564

Wilson, Jamie N., Nokes, D. James, Medley, Graham and Shouval, Daniel. (2007) Mathematical model of the antibody response to hepatitis B vaccines: implications for reduced schedules. Vaccine, Vol.25 (No.18). pp. 3705-3712. ISSN 0264-410X

Nigatu, W., Nokes, D. James, Afework, A., Brown, D. W. G., Cutts, F. T. and Jin, L.. (2006) Serological and molecular epidemiology of measles virus outbreaks reported in Ethiopia during 2000-2004. JOURNAL OF MEDICAL VIROLOGY, 78 (12). pp. 1648-1655. ISSN 0146-6615

White, L. J., Waris, M., Cane, Patricia, Nokes, D. James and Medley, Graham. (2005) The transmission dynamics of groups A and B human respiratory syncytial virus (hRSV) in England & Wales and Finland: seasonality and cross-protection. Epidemiology and Infection, Vol.13 (No.2). pp. 279-289. ISSN 0950-2688

Abebe, A., Nokes, D. James, Dejene, A., Enquselassie, F., Messele, T. and Cutts, Felicity. (2003) Seroepidemiology of hepatitis B virus in Addis Ababa Ethiopia: transmission patterns and vaccine control. Epidemiology and Infection, Vol.13 (No.1). pp. 757-770. ISSN 0950-2688

Enquselassie, F., Ayele, W., Dejene, A., Messele, T., Abebe, A., Cutts, Felicity and Nokes, D. James. (2003) Seroepidemiology of measles in Addis Ababa Ethiopia: implications for control through vaccination. Epidemiology and Infection, Vol.13 (No.3). pp. 507-519. ISSN 0950-2688

Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James. (2003) Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2). pp. 285-291. ISSN 0950-2688

Cutts, Felicity, Abebe, A., Messele, T., Dejene, A., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James. (2000) Sero-epidemiology of rubella in the urban population of Addis Ababa Ethiopia. Epidemiology and Infection, Vol.12 (No.3). pp. 467-479. ISSN 0950-2688

Wilson, J. N., Nokes, D. James and Carman, W. (William). (2000) Predictions of the emergence of vaccine-resistant hepatitis B in The Gambia using a mathematical model. Epidemiology and Infection, Vol.12 (No.2). pp. 295-307. ISSN 0950-2688

Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo and Medley, Graham. (1998) Seroepidemiology of group A rotavirus in suburban São Paulo, Brazil. Epidemiology and Infection, Vol.120 . pp. 327-334. ISSN 0950-2688

Edmunds, W. John , Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C. and Hall, A. J. (Andrew James). (1996) Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2). pp. 313-325. ISSN 0950-2688

Mwaniki, M.K., Nokes, D. James, Ignas, J., Munywoki, P., Ngama, Mwanajuma, Newton, R.J.C., Maitland, Kathryn and Berkley, James A.. Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital: an observational study. Bulletin of the World Health Organization, Vol.87 (No.4). pp. 263-324. ISSN 0042-9686