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Number of items: 193.
2024
McNamara, Paul S., Doorn, H. Rogier van, Adetifa, Ifedayo M.O. and Nokes, D. James (2024) Respiratory viruses and atypical bacteria. In: Manson's Tropical Diseases. Elsevier, pp. 254-267. ISBN 9780702079597
Lambisia, Arnold W., Murunga, Nickson, Mutunga, Martin, Cheruiyot, Robinson, Maina, Grace, Makori, Timothy O., Nokes, D. James and Agoti, Charles N. (2024) Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019β2022. Gut Pathogens, 16 (1). p. 2. doi:10.1186/s13099-023-00595-4 ISSN 1757-4749.
Cong, Bingbing, KoΓ§, UΔurcan, Bandeira, Teresa, Bassat, Quique, Bont, Louis, Chakhunashvili, Giorgi, Cohen, Cheryl, Desnoyers, Christine, Hammitt, Laura L., Heikkinen, Terho et al.
(2024)
Changes in the global hospitalisation burden of respiratory syncytial virus in young children during the COVID-19 pandemic : a systematic analysis.
Lancet Infectious Diseases
.
doi:10.1016/S1473-3099(23)00630-8
ISSN 1473-3099.
(In Press)
2023
Collins Owuor, D., de Laurent, Zaydah R., Nyawanda, Bryan O., Emukule, Gideon O., Kondor, Rebecca, Barnes, John R., Nokes, D. James, Agoti, Charles N. and Chaves, Sandra S. (2023) Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons. Scientific Reports, 13 . 22342. doi:10.1038/s41598-023-49157-3 ISSN 2045-2322.
Mwanga, Mike J., Lambisia, Arnold W., Morobe, John Mwita, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, GuzmΓ‘n-RincΓ³n, Laura M., Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N., Nyiro, Joyce and Githinji, George (2023) New SARS-CoV-2 Omicron variant with spike protein mutation Y451H, Kilifi, Kenya, MarchβMay 2023. Emerging Infectious Diseases , 29 (11). pp. 2376-2379. doi:10.3201/eid2911.230894 ISSN 1080-6059.
Gallagher, Katherine E., Nyiro, Joyce, Agoti, Charles N., Maitha, Eric, Nyagwange, James, Karani, Angela, Bottomley, Christian, Murunga, Nickson, Githinji, George, Mutunga, Martin et al.
(2023)
Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households : a prospective cohort study.
Influenza and Other Respiratory Viruses, 17
(9).
e13185.
doi:10.1111/irv.13185
ISSN 1750-2640.
Brand, Samuel, Cavallaro, Massimo, Cumming, Fergus, Turner, Charlie, Florence, Isaac, Blomquist, Paula, Hilton, Joe, Guzman-Rincon, Laura, House, Thomas A., Nokes, James and Keeling, Matthew James (2023) The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom. Nature Communications, 14 . 4100. doi:10.1038/s41467-023-38816-8 ISSN 2041-1723.
Brand, Samuel P. C., Cavallaro, Massimo, Cumming, Fergus, Turner, Charlie, Florence, Isaac, Blomquist, Paula, Hilton, Joe, Guzman-Rincon, Laura, House, Thomas, Nokes, D. James and Keeling, Matthew James (2023) The role of vaccination and public awareness in forecasts of Mpox incidence in the United Kingdom. Nature Communications, 14 . 4100. doi:10.1038/s41467-023-38816-8 ISSN 2041-1723.
Makori, Timothy O., Bargul, Joel L., Lambisia, Arnold W., Mwanga, Mike J., Murunga, Nickson, de Laurent, Zaydah R., Lewa, Clement S., Mutunga, Martin, Kellam, Paul, Cotten, Matthew, Nokes, D. James, Phan, My and Agoti, Charles N. (2023) Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012 β 2018. Virus Evolution, 9 (1). vead025. doi:10.1093/ve/vead025 ISSN 2057-1577.
Carbonell-Estrany, Xavier, SimΓ΅es, Eric A. F., Bont , Louis J. and Paes, Bosco A. (2023) Prioritising respiratory syncytial virus prevention in low-income and middle-income countries. Lancet Global Health, 11 (5). e655-e657. ISSN 2214-109X doi:10.1016/S2214-109X(23)00165-1
Nabakooza, Grace, Owuor, D. Collins, de Laurent, Zaydah R., Galiwango, Ronald, Owor, Nicholas, Kayiwa, John T., Jjingo, Daudi, Agoti, Charles N., Nokes, D. James, Kateete, David P., Kitayimbwa, John M., Frost, Simon D. W. and Lutwama, Julius J. (2023) Phylogenomic analysis uncovers a 9-year variation of Uganda influenza type-A strains from the WHO-recommended vaccines and other Africa strains. Scientific Reports, 13 (1). 5516. doi:10.1038/s41598-023-30667-z ISSN 2045-2322.
Nyiro, Joyce U., Nyawanda, Bryan O., Bukusi, Elizabeth, Mureithi, Marianne W., Murunga, Nickson, Nokes, D. James, Bigogo, Godfrey, Otieno, Nancy A., Opere, Victor A., Ouma, Alice, Pecenka, Clint and Munywoki, Patrick K. (2023) Assessment of gestational age at antenatal care visits among Kenyan women to inform delivery of a maternal respiratory syncytial virus (RSV) vaccine in low- and middle-income countries. Wellcome Open Research, 8 . 154. doi:10.12688/wellcomeopenres.19161.1 ISSN 2398-502X.
Nyawanda, Bryan O., Murunga, Nickson, Otieno, Nancy A., Bigogo, Godfrey, Nyiro, Joyce U., Vodicka, Elisabeth, Bulterys, Marc, Nokes, D. James, Munywoki, Patrick K. and Emukule, Gideon O. (2023) Estimates of the national burden of respiratory syncytial virus in Kenyan children aged under 5 years, 2010β2018. BMC Medicine, 21 (1). 122. doi:10.1186/s12916-023-02787-w ISSN 1741-7015.
Koltai, Mihaly, Moyes, Jocelyn, Nyawanda, Bryan, Nyiro, Joyce, Munywoki, Patrick K., Tempia, Stefano, Li, Xiao, Antillon, Marina, Bilcke, Joke, Flasche, Stefan, Beutels, Philippe, Nokes, D. James, Cohen, Cheryl and Jit, Mark (2023) Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa. BMC Medicine, 21 (1). 120. doi:10.1186/s12916-023-02806-w ISSN 1741-7015.
Lambisia, Arnold W., Makori, Timothy O., Mutunga, Martin, Cheruiyot, Robinson, Murunga, Nickson, Quick, Joshua, Githinji, George, Nokes, D. James, Houldcroft, Charlotte J. and Agoti, Charles N. (2023) Genomic epidemiology of Human Adenovirus F40 and F41 in Coastal Kenya : a retrospective hospital-based surveillance study (2013-2022). Virus Evolution . vead023. doi:10.1093/ve/vead023 ISSN 2057-1577.
Nyagwange, James, Kutima, Bernadette, Mwai, Kennedy, Karanja, Henry K., Gitonga, John N., Mugo, Daisy, Sein, Yiakon, Wright, Daniel, Omuoyo, Donwilliams O., Nyiro, Joyce U. et al.
(2023)
Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro.
International Journal of Infectious Diseases, 127
.
pp. 11-16.
doi:10.1016/j.ijid.2022.11.041
ISSN 1201-9712.
Owuor, D. Collins, de Laurent, Zaydah R., Nyawanda, Bryan O., Emukule, Gideon O., Kondor, Rebecca, Barnes, John R., Nokes, D. James, Agoti, Charles N. and Chaves, Sandra S. (2023) Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009-2018 influenza seasons. Scientific Reports . ISSN 2045-2322. (In Press)
Mwanga, Mike J., Lambisia, Arnold W., Mwita Morobe, John, Murunga, Nickson, Moraa, Edidah, Ndwiga, Leonard, Cheruiyot, Robinson, Musyoki, Jennifer, Mutunga, Martin, Guzman-Rincon, Laura M., Sande, Charles, Mwangangi, Joseph, Bejon, Philip, Ochola-Oyier, Lynette Isabella, Nokes, D. James, Agoti, Charles N., Nyiro, Joyce and Githinji, George (2023) A new Omicron lineage with Spike Y451H mutation that dominated a new COVID-19 wave in Kilifi, Coastal Kenya : March-May 2023. Emerging Infectious Diseases . ISSN 1080-6059. (In Press)
2022
Wambua, James, Munywoki, Patrick K., Coletti, Pietro, Nyawanda, Bryan O., Murunga, Nickson, Nokes, D. James and Hens, Niel (2022) Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal Kenya. PLOS ONE, 17 (11). e0278066. doi:10.1371/journal.pone.0278066 ISSN 1932-6203.
Carbonell-Estrany, Xavier, SimΓ΅es, Eric A. F., Bont, Louis J., Gentile, Angela, Homaira, Nusrat, Scotta, Marcelo Comerlato, Stein, Renato T., Torres, Juan P., Sheikh, Jarju, Broor, Shobha et al.
(2022)
Identifying the research, advocacy, policy and implementation needs for the prevention and management of respiratory syncytial virus lower respiratory tract infection in low- and middle-income countries.
Frontiers in Pediatrics, 10
.
1033125.
doi:10.3389/fped.2022.1033125
ISSN 2296-2360.
Tegally, Houriiyah, San, James E., Cotten, Matthew, Moir, Monika, Tegomoh, Bryan, Mboowa, Gerald, Martin, Darren P., Baxter, Cheryl, Lambisia, Arnold W., Diallo, Amadou et al.
(2022)
The evolving SARS-CoV-2 epidemic in Africa : insights from rapidly expanding genomic surveillance.
Science, 378
(6615).
eabq5358.
doi:10.1126/science.abq5358
ISSN 0036-8075.
Hilton, Joe, Riley, Heather L., Pellis, Lorenzo, Aziza, Rabia, Brand, Samuel P. C., Kombe, Ivy K., Ojal, John, Parisi, Andrea, Keeling, Matt J., Nokes, D. James, Manson-Sawko, Robert and House, Thomas A. (2022) A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic. PLoS Computational Biology, 18 (9). e1010390. doi:10.1371/journal.pcbi.1010390 ISSN 1553-7358.
Agoti, Charles N., Curran, Martin D., Murunga, Nickson, Ngari, Moses, Muthumbi, Ester, Lambisia, Arnold, Frost, Simon D. W., Blacklaws, Barbara, Nokes, D. James and Drumright, Lydia N. (2022) Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya. Gut Pathogens, 14 . 32. doi:10.1186/s13099-022-00506-z ISSN 1757-4749.
Orangi, Stacey, Ojal, John, Brand, Samuel P. C., Orlendo, Cameline, Kairu, Angela, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M., Uyoga, Sophie et al.
(2022)
Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya.
BMJ Global Health, 7
(8).
e009430.
doi:10.1136/bmjgh-2022-009430
ISSN 2059-7908.
Morobe, John Mwita, Pool, Brigitte, Marie, Lina, Didon, Dwayne, Lambisia, Arnold W., Makori, Timothy, Mohammed, Khadija Said, de Laurent, Zaydah R., Ndwiga, Leonard, Mburu, Maureen W. et al.
(2022)
Genomic epidemiology of SARS-CoV-2 in Seychelles, 2020β2021.
Viruses, 14
(6).
1318.
doi:10.3390/v14061318
ISSN 1999-4915.
Agoti, Charles N., Ochola-Oyier, Lynette Isabella, Dellicour, Simon, Mohammed, Khadija Said, Lambisia, Arnold W., de Laurent, Zaydah R., Morobe, John M. , Mburu, Maureen W., Omuoyo, Donwilliams O., Ongera, Edidah M. et al.
(2022)
Transmission networks of SARS-CoV-2 in coastal Kenya during the first two waves : a retrospective genomic study.
eLife, 11
.
e71703.
doi:10.7554/eLife.71703
ISSN 2050-084X.
Respiratory Virus Global Epidemiology Network, RESCEU investigators (Including: Nokes, D. James). (2022) Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019 : a systematic analysis. The Lancet, 399 (10340). pp. 2047-2064. doi:10.1016/S0140-6736(22)00478-0 ISSN 0140-6736.
Wangui, J., Nokes, D. James, Mobegi, V., Otieno, J. R., Agoit, C. N., Ngeranwa, J. N. and Bulimo, W. (2022) Spatial-temporal distribution and sequence diversity of Group A human respiratory syncytial viruses in Kenya preceding the emergence of ON1 genotype. Influenza and Other Respiratory Viruses, 16 (3). pp. 501-510. doi:10.1111/irv.12948 ISSN 1750-2640.
Nyiro, Joyce U., Bukusi, Elizabeth, Mwaengo, Dufton, Nyaguara, Amek, Nyawanda, Bryan, Otieno, Nancy, Bigogo, Godfrey, Murunga, Nickson, Widdowson, Marc-Alain, Verani, Jennifer R., Chaves, Sandra S., Mwangudza, Hope, Odundo, Calleb, Berkley, James A., Nokes, D. James and Munywoki, Patrick K. (2022) Efficiency of transplacental transfer of respiratory syncytial virus (RSV) specific antibodies among pregnant women in Kenya. Wellcome Open Research, 7 . 43. doi:10.12688/wellcomeopenres.17636.2 ISSN 2398-502X.
Nyagwange, James, Ndwiga, Leonard, Muteru, Kelvin, Wamae, Kevin, Tuju, James, testing team, COVID, Kutima, Bernadette, Gitonga, John, Karanja, Henry, Mugo, Daisy et al.
(2022)
Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya [version 1; peer review: 2 approved].
Wellcome Open Research, 7
.
p. 69.
doi:10.12688/wellcomeopenres.17661.1
ISSN 2398-502X.
Lambisia, Arnold W., Mohammed, Khadija S., Makori, Timothy O., Ndwiga, Leonard, Mburu, Maureen W., Morobe, John M. , Moraa, Edidah O., Musyoki, Jennifer, Murunga, Nickson, Mwangi, Jane N., Nokes, D. James, Agoti, Charles N., Ochola-Oyier, Lynette Isabella and Githinji, George (2022) Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol. Frontiers in Medicine, 9 . 836728. doi:10.3389/fmed.2022.836728 ISSN 2296-858X.
Phan, My V. T., Agoti, Charles N., Munywoki, Patrick K., Otieno, Grieven Paul, Ngama, Mwanajuma, Kellam, Paul, Cotton, Matthew and Nokes, D. James (2022) Identification of missed respiratory viruses by metagenomic sequencing of clinical respiratory samples from Kenya. Scientific Reports, 12 . 202. doi:10.1038/s41598-021-03987-1 ISSN 2045-2322.
Etyang, Anthony O., Lucinde, Ruth, Karanja, Henry, Kalu, Catherine, Mugo, Daisy, Nyagwange, James, Gitonga, John, Tuju, James, Wanjiku, Perpetual, Karani, Angela et al.
(2022)
Seroprevalence of antibodies to SARS-CoV-2 among health care workers in Kenya.
Clinical Infectious Diseases, 74
(2).
pp. 288-293.
doi:10.1093/cid/ciab346
ISSN 1058-4838.
2021
Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy, Mutunga, Martin, Medley, Graham F., Nokes, D. James and Munywoki, Patrick K. (2021) Infection patterns of endemic human coronaviruses in rural households in coastal Kenya [version 1; peer review: 1 approved, 2 approved with reservations]. Wellcome Open Research, 6 . 27. doi:10.12688/wellcomeopenres.16508.1 ISSN 2398-502X.
Morobe, John Mwita, Kamau, Everlyn, Murunga, Nickson, Gatua, Winfred, Luka, Martha M., Lewa, Clement, Cheruiyot, Robinson, Mutunga, Martin, Odundo, Calleb, Nokes, D. James and Agoti, Charles N. (2021) Trends and intensity of Rhinovirus invasions in Kilifi, coastal Kenya, over a 12-year period, 2007β2018. Open Forum Infectious Diseases, 8 (12). ofab571. doi:10.1093/ofid/ofab571 ISSN 2328-8957.
Mousa, Andria, Winskill, Peter, Watson, Oliver J., Ratmann, Oliver, Monod, MΓ©lodie, Ajelli, Marco, Diallo, Aldiouma, Dodd, Peter J., Grijalva, Carlos G., Kiti, Moses Chapa et al.
(2021)
Social contact patterns and implications for infectious disease transmission : a systematic review and meta-analysis of contact surveys.
eLife, 10
.
e70294.
doi:10.7554/eLife.70294
ISSN 2050-084X.
Del Fava, Emanuele, Adema, Irene, Kiti, Moses C., Poletti, Piero, Merler, Stefano, Nokes, D. James, Manfredi, Piero and Melegaro, Alessia (2021) Individualβs daily behaviour and intergenerational mixing in different social contexts of Kenya. Scientific Reports, 11 (1). 21589. doi:10.1038/s41598-021-00799-1 ISSN 2045-2322.
Bottomley, C., Otiende, M., Uyoga, S., Gallagher, K., Kagucia, E. W., Etyang, A. O., Mugo, D., Gitonga, J., Karanja, H., Nyagwange, J., Adetifa, I. M. O., Agweyu, A., Nokes, D. J., Warimwe, G. M. and Scott, J. A. G. (2021) Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. Nature Communications, 12 . 6196. doi:10.1038/s41467-021-26452-z ISSN 2041-1723.
Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E., Lessells, Richard, Cuadros, Diego, Martin, Darren P., Rasmussen, David A., Zekri, Abdel-Rahman N., Sangare, Abdoul K. et al.
(2021)
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.
Science, 374
(6566).
pp. 423-431.
doi:10.1126/science.abj4336
ISSN 0036-8075.
Brand, Samuel, Ojal, John, Aziza, Rabia, Were, Vincent, Okiro, Emelda A., Kombe, Ivy K, Mburu, Caroline, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
COVID-19 transmission dynamics underlying epidemic waves in Kenya.
Science, 374
(6570).
pp. 989-994.
doi:10.1126/science.abk0414
ISSN 0036-8075.
Owuor, D. Collins, de Laurent, Zaydah R., Kikwai, Gilbert K., Mayieka, Lillian M., Ochieng, Melvin, MΓΌller, Nicola F., Otieno, Nancy A., Emukule, Gideon O., Hunsperger, Elizabeth A., Garten, Rebecca, Barnes, John R., Chaves, Sandra S., Nokes, D. James and Agoti, Charles N. (2021) Characterizing the countrywide epidemic spread of influenza A(H1N1)pdm09 virus in Kenya between 2009 and 2018. Viruses, 13 (10). e1956. doi:10.3390/v13101956 ISSN 1999-4915.
RSV GOLD collaborators (Including:
Mazur, Natalie I., LΓΆwensteyn, Yvette N., Willemsen, Joukje E., Gill, Christopher J., Forman, Leah, Mwananyanda, Lawrence M., Blau, Dianna M., Breiman, Robert F., Madhi, Shabir A., Mahtab, Sana et al.
).
(2021)
Global respiratory syncytial virusβrelated infant community deaths.
Clinical Infectious Diseases, 73
(Supplement 3).
S229-S237.
doi:10.1093/cid/ciab528
ISSN 1058-4838.
Awori, Juliet O., Kamau, Alice, Morpeth, Susan, Kazungu, Sidi, Silaba, Micah, Sande, Joyce, Karani, Angela, Nyongesa, Sammy, Mwarumba, Salim, Musyimi, Robert et al.
(2021)
The etiology of pneumonia in HIV-uninfected children in Kilifi, Kenya : findings from the pneumonia etiology research for child health (PERCH) Study.
The Pediatric infectious disease journal, 40
(9S).
S29-S39.
doi:10.1097/INF.0000000000002653
ISSN 1532-0987.
Luka, Martha M., Kamau, Everlyn, de Laurent, Zaydah R., Morobe, John Mwita, Alii, Leonard K., Nokes, D. James and Agoti, Charles N. (2021) Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018. Wellcome Open Research, 6 . 178. doi:10.12688/wellcomeopenres.16911.1 ISSN 2398-502X.
Githinji, George , de Laurent, Zaydah R. , Mohammed, Khadija Said , Omuovo, Donwilliams O. , Macharia, Peter M. , Morobe, John M. , Otieno, Edward , Kinyanjui, Samson M. , Agweyu, Ambrose, Maitha, Eric et al.
(2021)
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya.
Nature Communications, 12
.
4809 .
doi:10.1038/s41467-021-25137-x
ISSN 2041-1723.
Parisi, Andrea, Brand, Samuel, Hilton, Joe, Aziza, Rabia, Keeling, Matt J. and Nokes, D. James (2021) Spatially resolved simulations of the spread of COVID-19 in three European countries. PLOS Computational Biology, 17 (7). e1009090. doi:10.1371/journal.pcbi.1009090 ISSN 1553-7358.
FLU GOLD study group (Including: LΓΆwensteyn, Yvette N., Nair, Harish, Nunes, Marta C., van Roessel, Ichelle, Vernooij, Femke S., Willemsen, Joukje, Bont, Louis J. and Mazur, Natalie I.). (2021) Estimated impact of maternal vaccination on global paediatric influenza-related in-hospital mortality : a retrospective case series. eClinicalMedicine, 37 . 100945. doi:10.1016/j.eclinm.2021.100945 ISSN 2589-5370.
Salimi, Vahid, Viegas, Mariana, Trento, Alfonsina, Agoti, Charles N., Anderson, Larry J., Avadhanula, Vasanthi, Bahl, Justin, Bont, Louis, Brister, J. Rodney, Cane, Patricia A. et al.
(2021)
Proposal for Human Respiratory Syncytial Virus (HRSV) nomenclature below the species level.
Emerging Infectious Diseases , 27
(6).
pp. 1-9.
doi:10.3201/eid2706.204608
ISSN 1080-6059.
Oketch, John W., Everlyn, Everlyn, Otieno, James R., Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James and Agoti, Charles N. (2021) Comparative analysis of spatial-temporal patterns of human metapneumovirus and respiratory syncytial virus in Africa using genetic data, 2011-2014. Virology Journal, 18 (1). 104. doi:10.1186/s12985-021-01570-8 ISSN 1743-422X.
Ojal, John, Brand, Samuel P. C., Were, Vincent, Okiro, Emelda A., Kombe, Ivy K., Mburu, Caroline, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data.
Wellcome Open Research, 6
.
127.
doi:10.12688/wellcomeopenres.16748.3
ISSN 2398-502X.
Lambisia, Arnold W., Phan, My V. T., de Laurent, Zaydah R., Cotten, Matthew, Nokes, D. James and Agoti, Charles N. (2021) Near complete genomes of eight human astroviruses recovered from diarrheal stool samples of hospitalized children in coastal Kenya in 2019. Microbiology Resource Announcements, 10 (15). e00162-21. doi:10.1128/MRA.00162-21 ISSN 2576-098X.
Oketch, John W., Kamau, Everlyn, Mwema, Anthony, Lewa, Clement, Isoe, Everlyne, Nokes, D. James and Agoti, Charles N. (2021) Data for Comparative analysis of spatial-temporal patterns of human metapneumovirus (HMPV) and respiratory syncytial virus (RSV) in Africa using genetic data. [Dataset]
Nyaguthii, Dickson Machira, Otieno, Grieven P., Kombe, Ivy K., Koech, Dorothy C., Mutunga, Martin, Medley, Graham F., Nokes, D. James and Munywoki, Patrick K. (2021) Data for Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. [Dataset]
Ojal, John, Brand, Samuel, Were, Vincent, Okiro, Emelda A., Kombe, Ivy K., Mburu, Caroline, Aziza, Rabia, Ogero, Morris, Agweyu, Ambrose, Warimwe, George M. et al.
(2021)
Data for Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data.
[Dataset]
Kamau, Everlyn, Otieno, James R., Lewa, Clement S., Mwema, Anthony, Murunga, Nickson, Nokes, D. James and Agoti, Charles N. (2021) Respiratory Syncytial Virus genotype BA in Kilifi, Kenya : evolutionary dynamics, 15 years on. [Dataset]
Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O. and Nokes, D. James (2021) Data for Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. [Dataset]
Rose, Erica Billig, Nyawanda, Bryan O., Munywoki, Patrick K., Murunga, Nickson, Bigogo, Godfrey M., Otieno, Nancy A., Onyango, Clayton, Chaves, Sandra S., Verani, Jennifer R., Emukule, Gideon O. , Widdowson, MarcβAlain, Nokes, D. James, Gerber, Susan I. and Langley, Gayle E. (2021) Respiratory syncytial virus seasonality in three epidemiological zones of Kenya. Influenza and Other Respiratory Viruses, 15 (2). pp. 195-201. doi:10.1111/irv.12810 ISSN 1750-2659.
Mburu, C. N., Ojal, J., Chebet, R., Akech, D., Karia, B., Tuju, J., Sigilai, A., Abbas, K., Jit, M., Funk, S., Smits, G., van Gageldonk, P. G. M., van der Klis , F. R. M., Tabu, C., Nokes, D. James, LSHTM CMMID COVID19 Working Group, , Scott, J. A. G., Flasche, S. and Adetifa, I. M. O. (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC Medicine, 19 . 35. doi:10.1186/s12916-021-01906-9 ISSN 1741-7015.
Kombe, Ivy K., Agoti, Charles N., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James and Medley, Graham (2021) Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission. Scientific Reports, 11 . 1463. doi:10.1038/s41598-021-81078-x ISSN 2045-2322.
Wang, Xin, Li, You, Deloria-Knoll, Maria, Madhi, Shabir A., Cohen, Cheryl, Ali, Asad, Basnet, Sudha, Bassat, Quique, Brooks, W. Abdullah, Chittaganpitch, Malinee et al.
(2021)
Global burden of acute lower respiratory infection associated with human metapneumovirus in children under five years for 2018 : a systematic review and modelling study.
Lancet Global Health, 9
(1).
E33-E43.
doi:10.1016/S2214-109X(20)30393-4
ISSN 2214-109X .
2020
Kamau, Everlyn , Otienoa, James R, Lewa, Clement S., Mwema , Anthony , Murunga, Nickson , Nokes, D. James and Agoti , Charles N. (2020) Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on. Scientific Reports, 10 . 21176 . doi:10.1038/s41598-020-78234-0 ISSN 2045-2322.
Mwanga, Mike J., Verani, Jennifer R., Omore, Richard, Tate, Jacqueline E., Parashar, Umesh D., Murunga, Nickson, Gicheru, Elijah, Breiman, Robert F., Nokes, D. James and Agoti, Charles N. (2020) Multiple introductions and predominance of 3 rotavirus group A genotype G3P[8] in Kilifi, coastal Kenya, 4 years after nationwide vaccine introduction. Pathogens, 9 (12). 981. doi:10.3390/pathogens9120981 ISSN 2076-0817.
Nyiro, Joyce U., Bukusi, Elizabeth, Mwaengo, Dufton, Walumbe, David, Nyaguara, Amek, Nyawanda, Bryan, Otieno, Nancy, Berkley, James A., Munywoki, Patrick and Nokes, D. James (2020) Implications of gestational age at antenatal care attendance on the successful implementation of a maternal respiratory syncytial virus (RSV) vaccine program in coastal Kenya. BMC Public Health, 20 (1). 1723. doi:10.1186/s12889-020-09841-9 ISSN 1471-2458.
Luka, Martha M., Kamau, Everlyn, Adema, Irene, Munywoki, Patrick K., Otieno, Grieven P., Gicheru, Elijah, Gichuki, Alex, Kibinge, Nelson, Agoti, Charles N. and Nokes, D. James (2020) Molecular epidemiology of human rhinovirus from one-year surveillance within a school setting in rural coastal Kenya. Open Forum Infectious Diseases, 7 (10). ofaa385. doi:10.1093/ofid/ofaa385 ISSN 2328-8957.
Mweu, Marshal M., Murunga, Nickson, Otieno, Juliet W. and Nokes, D. James (2020) Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya. Wellcome Open Research, 5 . 155. doi:10.12688/wellcomeopenres.16067.1 ISSN 2398-502X.
Adema, Irene Wangwa, Kamau, Everlyn, Nyiro, Joyce Uchi, Otieno, Grieven P., Lewa, Clement, Munywoki, Patrick K. and Nokes, D. James (2020) Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. Wellcome Open Research, 5 . 63. doi:10.12688/wellcomeopenres.15703.2 ISSN 2398-502X.
Otieno, Grieven P., Murunga, Nickson, Agoti, Charles N., Gallagher, Katherine E., Awori, Juliet O. and Nokes, D. James (2020) Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya. Wellcome Open Research, 5 . 150. doi:10.12688/wellcomeopenres.16037.2 ISSN 2398-502X.
Wagner, Moritz, Kombe, Ivy K., Kiti, Moses Chapa, Aziza, Rabia, Barasa, Edwine and Nokes, D. James (2020) Using contact data to model the impact of contact tracing and physical distancing to control the SARS-CoV-2 outbreak in Kenya [version 1; peer review: 1 approved, 1 approved with reservations]. Wellcome Open Research, 5 . 212. doi:10.12688/wellcomeopenres.16264.1 ISSN 2398-502X.
RSV GOLD Study Group (Including: LΓΆwensteyn, Yvette N., Phijffer, Emily W. E. M., Simons, Juliette V. L., Scheltema, Nienke M., Mazur, Natalie I., Nair, Harish and Bont, Louis J.). (2020) Respiratory syncytial virus-related death in children with Down Syndrome. Pediatric Infectious Disease Journal, 39 (8). pp. 665-670. doi:10.1097/INF.0000000000002666 ISSN 0891-3668.
Mwanga, Mike J., Owor , Betty E., Ochieng , John B., Ngama , Mwanajuma H., Ogwel , Billy , Onyango, Clayton , Juma , Jane , Njeru, Regina, Gicheru, Elijah, Oteno, Grieven P. et al.
(2020)
Rotavirus group : a genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
BMC Infectious Diseases, 20
.
504.
doi:10.1186/s12879-020-05230-0
ISSN 1471-2334.
Nyasimi, Festus M., Owuor, D. Collins, Ngoi, Joyce M., Mwihuri, Alexander G., Otieno, Grieven P., Otieno, James R., Githinji, George, Nyiro, Joyce U., Nokes, D. James and Agoti, Charles N. (2020) Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season. Virus Evolution, 6 (2). veaa045. doi:10.1093/ve/veaa045 ISSN 2057-1577.
Kamau, Everlyn, Otieno, James R., Murunga, Nickson, Oketch, John W., Ngoi, Joyce M., de Laurent, Zaydah R., Mwema, Anthony, Nyiro, Joyce U., Agoti, Charles N. and Nokes, D. James (2020) Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. Virus Evolution, 6 (2). veaa050. doi:10.1093/ve/veaa050 ISSN 2057-1577.
Khagayi, Sammy, Omore, Richard, Otieno, Grieven P., Ogwel, Billy, Ochieng, John B., Juma, Jane, Apondi, Evans, Bigogo, Godfrey, Onyango, Clayton, Ngama, Mwanajuma et al.
(2020)
Effectiveness of monovalent rotavirus vaccine against hospitalization with acute rotavirus gastroenteritis in Kenyan children.
Clinical Infectious Diseases, 70
(11).
pp. 2298-2305.
doi:10.1093/cid/ciz664
ISSN 1537-6591.
Otieno, G. P., Bottomley, C., Khagayi, S., Adetifa, I., Ngama, M., Omore, R., Ogwel, B., Owor, B. E., Bigogo, G., Ochieng, J. B. et al.
(2020)
Impact of the introduction of rotavirus vaccine on hospital admissions for diarrhoea among children in Kenya : a controlled interrupted time series analysis.
Clinical Infectious Diseases, 70
(11).
pp. 2306-2313.
doi:10.1093/cid/ciz912
ISSN 1058-4838.
Owuor, D. Collins, Ngoi, Joyce M., Otieno, James R., Otieno, Grieven P., Nyasimi, Festus M., Nyiro, Joyce U., Agoti, Charles N., Chaves, Sandra S. and Nokes, D. James (2020) Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. Influenza and Other Respiratory Viruses, 14 (3). pp. 320-330. doi:10.1111/irv.12717 ISSN 1750-2640.
Kinyanjui, Timothy, Pan-Ngum, Wirichada, Saralamba, Sompob, Taylor, Sylvia, White, Lisa J. and Nokes, D. James (2020) Model evaluation of target product profiles of an infant vaccine against respiratory syncytial virus (RSV) in a developed country setting. Vaccine: X, 4 . 100055. doi:10.1016/j.jvacx.2020.100055 ISSN 2590-1362.
Brand, Samuel, Munywoki, Patrick, Walumbe, David, Keeling, Matthew James and Nokes, D. James (2020) Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households. eLife, 9 . e47003. doi:10.7554/eLife.47003 ISSN 2050-084X.
Kamau, Everlyn, Otieno, James Richard, Murunga, Nickson, Oketch, John W., Ngoi, Joyce M., de Laurent, Zaydah R., Mwema, Anthony, Nyrio, Joyce U., Agoti, Charles N. and Nokes, D. James (2020) Data for Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015-17. [Dataset]
Adema, Irene Wangwa, Kamau, Everlyn, Nyiro, Joyce Uchi, Otieno, Grieven P., Lewa, Clement, Munywoki, Patrick K. and Nokes, D. James (2020) Data for Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya. [Dataset]
Kamau, Everlyn, Oketch, John W., de Laurent, Zaydah R., Phan, My V. T., Agoti, Charles N., Nokes, D. James and Cotton, Matthew (2020) Whole genome sequencing and phylogenetic analysis of Human metapneumovirus strains from Kenya and Zambia. BMC Genomics, 21 (5). doi:10.1186/s12864-019-6400-z ISSN 1471-2164.
Abidha, C., Nyiro, J., Kamau, E., Abdullahi, O., Nokes, D. James and Agoti, C. N. (2020) Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015-2016. Virus Evolution, 6 (1). veaa031. doi:10.1093/ve/veaa031 ISSN 2057-1577.
2019
Kamau, Everlyn, Luka, Martha M., de Laurent, Zaydah R., Adema, Irene, Agoti, Charles N. and Nokes, D. James (2019) Genome sequences of human coronavirus OC43 and NL63, associated with respiratory infections in Kilifi, Kenya. Microbiology Resource Announcements, 8 (46). e00730-19. doi:10.1128/MRA.00730-19 ISSN 2576-098X.
Oketch, John W., Kamau, Everlyn, Otieno, Grieven P., Otieno, James R., Agoti, Charles N. and Nokes, D. James (2019) Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007β2016. BMC Infectious Diseases, 19 (1). 757. doi:10.1186/s12879-019-4381-9 ISSN 1471-2334.
Kiti, Moses Chapa, Melegaro, Alessia, Cattuto, Ciro and Nokes, D. James (2019) Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors. Wellcome Open Research, 4 . p. 84. doi:10.12688/wellcomeopenres.15268.2 ISSN 2398-502X.
Li, You, Reeves, Rachel M, Wang, Xin, Bassat, Quique, Brooks, W Abdullah, Cohen, Cheryl, Moore, David P, Nunes, Marta, Rath, Barbara, Campbell, Harry et al.
(2019)
Global patterns in monthly activity of influenza virus, respiratory syncytial virus, parainfluenza virus, and metapneumovirus : a systematic analysis.
The Lancet Global Health, 7
(8).
e1031-e1045.
doi:10.1016/S2214-109X(19)30264-5
ISSN 2214-109X.
Agoti, Charles N., Phan, My V. T., Munywoki, Patrick K., Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotton, Matthew and Nokes, D. James (2019) Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant. Scientific Reports, 9 . 10076. doi:10.1038/s41598-019-46509-w ISSN 2045-2322.
Kombe, Ivy K., Munywoki, Patrick K., Baguelin, Marc, Nokes, D. James and Medley, Graham (2019) Model-based estimates of transmission of respiratory syncytial virus within households. Epidemics, 27 . pp. 1-11. doi:10.1016/j.epidem.2018.12.001 ISSN 1755-4365.
Sand, Charles, Njunge, James, Mwongeli, Joyce, Mutunga, Martin, Chege, Timothy, Gicheru, Elijah, Gardiner, Elizabeth, Gwela, Agnes, Drysdale, Simon, Green, Christopher, Berkley, James, Nokes, D. James and Pollard, Andrew J. (2019) Airway response to respiratory syncytial virus has incidental antibacterial effects. Nature Communications, 10 (1). 2218. doi:10.1038/s41467-019-10222-z ISSN 2041-1723.
Brand, Samuel, Munywoki, Patrick K., Walumbe, David, Keeling, Matthew James and Nokes, D. James (2019) Data for Reducing RSV hospitalisation in a lower-income country by vaccinating mothers-to-be and their households. [Dataset]
Kamau, E., Onyango, C. O., Otieno, G. P., Kiyuka, P. K., Agoti, C. N., Medley, G. F., Cane, P. A., Nokes, D. James and Munywoki, P. K. (2019) An intensive, active surveillance reveals continuous invasion and high diversity of rhinovirus in households. Journal of Infectious Diseases, 219 (7). pp. 1049-1057. doi:10.1093/infdis/jiy621 ISSN 0022-1899.
Nyiro, Joyce, Kiyuka, Patience K., Mutunga, Martin N., Sande, Charles J., Munywoki, Patrick K., Scott, J. Anthony G. and Nokes, D. James (2019) Agreement between ELISA and plaque reduction neutralisation assay in detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya. Wellcome Open Research, 4 . 33. doi:10.12688/wellcomeopenres.15108.1 ISSN 2398-502X.
Kamau, Everlyn, Agoti, Charles N., Ngoi, Joyce M., de Laurent, Zaydah R., Gitonga, John, Cotten, Matthew, Phan, My V. T., Nokes, D. James, Delwart, Eric, Sanders, Eduard, Warimwe, George M. and Dunning Hotopp, Julie C. (2019) Complete genome sequences of dengue virus type 2 strains from Kilifi, Kenya. Microbiology Resource Announcements, 8 (4). e01566-18. doi:10.1128/MRA.01566-18 ISSN 2576-098X.
2018
UNSPECIFIED (2018) Stakeholderβs technical meeting report : epidemiology and control options of respiratory syncytial virus (RSV) in the Kenyan context. KEMRI HQ / National Influenza Centre / KEMRI-Wellcome Trust Programme / KEMRI-CDC.
Morobe, John Mwita, Nyiro, Joyce, Brand, Samuel, Kamau, Everlyn, Gicheru, Elijah, Eyase, Fredrick, Otieno, Grieven, Munywoki, Patrick, Agoti, Charles and Nokes, D. James (2018) Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. Wellcome Open Research, 3 . 128. doi:10.12688/wellcomeopenres.14836.1 ISSN 2398-502X.
Morobe, John Mwita, Nyiro, Joyce U., Brand, Samuel, Kamau, Everlyn, Munywoki, Patrick K., Agoti, Charles N. and Nokes, D. James (2018) Data for Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance. [Dataset]
Sande, Charles J., Mutunga, Martin, Muteti, Jacqueline, Berkley, James A., Nokes, D. James and Njunge, James (2018) Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics. Scientific Reports, 8 (1). 13814 . doi:10.1038/s41598-018-32072-3 ISSN 2045-2322.
Nyiro, Joyce Uchi, Munywoki, Patrick, Kamau, Everlyn, Agoti, Charles, Gichuki, Alex, Etyang, Timothy, Otieno, Grieven and Nokes, D. James (2018) Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. Wellcome Open Research, 3 . 89. doi:10.12688/wellcomeopenres.14662.1 ISSN 2398-502X.
Morpeth, Susan C., Munywoki, Patrick, Hammitt, Laura L., Bett, Anne, Bottomley, Christian, Onyango, Clayton O., Murdoch, David R., Nokes, D. James and Scott, J. Anthony G. (2018) Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children. Scientific Reports, 8 (1). 11030. doi:10.1038/s41598-018-29119-w ISSN 2045-2322.
Nyiro, Joyce U., Otieno, Grieven P. and Nokes, D. James (2018) Data for Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya : baseline epidemiological observations. [Dataset]
Otieno, J. R., Kamau, E. M., Oketch, J. W., Ngoi, J. M., Gichuki, A. M., Binter, Ε ., Otieno, G. P., Ngama, M., Agoti, C. N., Cane, P. A., Kellam, P., Cotten, M., Lemey, P. and Nokes, D. James (2018) Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains. Virus Evolution, 4 (2). vey027. doi:10.1093/ve/vey027 ISSN 2057-1577.
Kiyuka, Patience K, Agoti, Charles N, Munywoki, Patrick K, Njeru, Regina, Bett, Anne, Otieno, James R, Otieno, Grieven P, Kamau, Everlyn, Clark, Taane G, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2018) Human coronavirus NL63 molecular epidemiology and evolutionary patterns in rural coastal Kenya. The Journal of Infectious Diseases, 217 (11). pp. 1728-1739. doi:10.1093/infdis/jiy098 ISSN 0022-1899.
Munywoki, Patrick K., Koech, Dorothy C, Agoti, Charles N., Cane, Patricia A., Medley, Graham and Nokes, D. James (2018) Continuous invasion by respiratory viruses observed in rural households during a respiratory syncytial virus seasonal outbreak in coastal Kenya. Clinical Infectious Diseases, 67 (10). pp. 1559-1567. doi:10.1093/cid/ciy313 ISSN 1058-4838.
Mohammed, Khadija Said, Kibinge, Nelson, Prins, Pjotr, Agoti, Charles N., Cotten, Matthew, Nokes, D. James, Brand, Samuel and Githinji, George (2018) Evaluating the performance of tools used to call minority variants from whole genome short-read data. Wellcome Open Research, 3 . 21. doi:10.12688/wellcomeopenres.13538.2 ISSN 2398-502X.
Agoti, Charles N., Munywoki, Patrick K., Cotten, Matthew and Nokes, D. James (2018) Data for Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. [Dataset]
Nyiro, Joyce U., Munywoki, Patrick K. and Nokes, D. James (2018) Data for Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. [Dataset]
Owor, Betty E., Mwanga, Mike J., Njeru, Regina, Mugo, Robert, Ngama, Mwanajuma, Otieno, Grieven P., Nokes, D. James and Agoti, C.N. (2018) Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013. Wellcome Open Research, 3 . 150. doi:10.12688/wellcomeopenres.14908.1 ISSN 2398-502X.
2017
Scheltema, Nienke M., Gentile, Angela, Lucion, Florencia, Nokes, D. James, Munywoki, Patrick K., Madhi, Shabir A., Groome, Michelle J., Cohen, Cheryl, Moyes, Jocelyn, Thorburn, Kentigern et al.
(2017)
Global respiratory syncytial virus-associated mortality in young children (RSV GOLD) : a retrospective case series.
The Lancet Global Health, 5
(10).
e984-e991.
doi:10.1016/s2214-109x(17)30344-3
ISSN 2214-109X.
Shi, Ting, McAllister, David A., O'Brien, Katherine L., Simoes, Eric A. F., Madhi, Shabir A., Gessner, Bradford D., Polack, Fernando P., Balsells, Evelyn, Acacio, Sozinho, Aguayo, Claudia et al.
(2017)
Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015 : a systematic review and modelling study.
The Lancet, 390
(10098).
pp. 946-958.
doi:10.1016/S0140-6736(17)30938-8
ISSN 0140-6736.
Flasche, Stefan, Ojal, John, Le Polain de Waroux, Olivier, Otiende, Mark, OβBrien, Katherine L., Kiti, Moses, Nokes, D. James, Edmunds, W John and Scott, J. Anthony G. (2017) Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine : a modelling study based on data from PCV10 introduction in Kilifi, Kenya. BMC Medicine, 15 (1). 113. doi:10.1186/s12916-017-0882-9 ISSN 1741-7015.
Adetifa, Ifedayo M.O., Bwanaali, Tahreni, Wafula, Jackline, Mutuku, Alex, Karia, Boniface, Makumi, Anne, Mwatsuma, Pauline, Bauni, Evasius, Hammitt, Laura L., Nokes, D. James, Maree, Ephantus, Tabu, Collins, Kamau, Tatu, Mataza, Christine, Williams, Thomas N. and Scott, J. Anthony G. (2017) Cohort profile : the Kilifi vaccine monitoring study. International Journal of Epidemiology, 46 (3). 792-792h. doi:10.1093/ije/dyw202 ISSN 0300-5771.
Nyiro, Joyce U., Kombe, Ivy K., Sande, Charles J., Kipkoech, James, Kiyuka, Patience K., Onyango, Clayton O., Munywoki, Patrick K., Kinyanjui, Timothy M. and Nokes, D. James (2017) Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya. PLoS One, 12 (5). e0177803. doi:10.1371/journal.pone.0177803 ISSN 1932-6203.
Nokes, D. James and Otieno, James R. (2017) Data for Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. [Dataset]
Nokes, D. James and Kamau, Evelyn (2017) Data for Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. [Dataset]
Nokes, D. James and Otieno, James R. (2017) Data for Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010β2015. [Dataset]
Ngari, Moses M., Fegan, Greg, Mwangome, Martha K., Ngama, Mwanajuma J., Mturi, Neema, Scott, John Anthony Gerard, Bauni, Evasius, Nokes, D. James and Berkley, James A. (2017) Mortality after inpatient treatment for severe pneumonia in children : a cohort study. Paediatric and Perinatal Epidemiology, 31 (3). pp. 233-242. doi:10.1111/ppe.12348 ISSN 0269-5022.
Atkins, Katie, Baguelin, Marc, Brand, Samuel, Jit, Mark, Keeling, Matthew James, Kibinge, Nelson, Kinyanjui, Timothy, Medley, Graham, Melegaro, Alessia, Munywoki, Patrick, Nokes, D. James, Panovska-Griffiths, Jasmina, Pan-Ngum, Wurichada , Pellis, Lorenzo and White, Lisa (2017) RSV modelling meeting. University of Warwick, Coventry: School of Life Science and Zeeman Institute SBIDER Centre, University of Warwick, UK and KEMRI-Wellcome Trust Research Programme , Kilifi, Kenya. (Unpublished)
Wathuo, Miriam, Medley, Graham, Nokes, D. James and Munywoki, Patrick K. (2017) Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study. Wellcome Open Research, 1 . 27. doi:10.12688/wellcomeopenres.10284.2
Agoti, Charles N., Munywoki, Patrick K., Phan, My V. T., Otieno, James R., Kamau, Everlyn, Bett, Anne, Kombe, Ivy, Githinji, George, Medley, Graham, Cane, Patricia A., Kellam, Paul, Cotten, Matthew and Nokes, D. James (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3 (1). vex006. doi:10.1093/ve/vex006 ISSN 2057-1577.
Kamau, Everlyn, Agoti, Charles N., Lewa, Clement S., Oketch, John, Owor, Betty E., Otieno, Grieven P., Bett, Anne, Cane, Patricia A. and Nokes, D. James (2017) Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR. Journal of clinical virology . doi:10.1016/j.jcv.2016.12.011 ISSN 1386-6532 .
Otieno, James R., Kamau, Everlyn M., Agoti, Charles N., Lewa, Clement, Otieno, Grieven, Bett, Ann, Ngama, Mwanajuma, Cane, Patricia A. and Nokes, D. James (2017) Spread and evolution of respiratory syncytial virus A genotype ON1, coastal Kenya, 2010β2015. Emerging Infectious Diseases, 23 (2). pp. 264-271. doi:10.3201/eid2302.161149 ISSN 1080-6059.
Pan-Ngum, Wirichada, Kinyanjui, Timothy M., Kiti, Moses C., Taylor, Sylvia, Toussaint, Jean-François, Saralamba, Sompob, Van Effelterre, Thierry, Nokes, D. James and White, Lisa J. (2017) Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles : a consensus modelling approach. Vaccine, 35 (2). pp. 403-409. doi:10.1016/j.vaccine.2016.10.073 ISSN 0264-410X.
2016
Nyiro, Joyce Uchi, Sande, Charles Jumba, Mutunga, Martin, Kiyuka, Patience Kerubo, Munywoki, Patrick Kioo, Scott, John Anthony G. and Nokes, D. James (2016) Absence of association between cord specific antibody levels and severe respiratory syncytial virus (RSV) disease in early infants : a case control study from coastal Kenya. PLoS One, 11 (11). e0166706. doi:10.1371/journal.pone.0166706 ISSN 1932-6203.
Emukule, Gideon O. , Mott, Joshua A., Spreeuwenberg, Peter, Viboud, Cecile, Commanday, Alexander, Muthoka, Philip, Munywoki, Patrick K., Nokes, D. James, Velden, Koos van der and Paget, John W. (2016) Influenza activity in Kenya, 2007-2013 : timing, association with climatic factors, and implications for vaccination campaigns. Influenza and Other Respiratory Viruses, 10 (5). pp. 375-385. doi:10.1111/irv.12393 ISSN 1750-2640.
Agoti, Charles N., Kiyuka, Patience K., Kamau, Everlyn, Munywoki, Patrick K., Bett, Anne, van der Hoek, Lia, Kellam, Paul, Nokes, D. James and Cotten, Matthew (2016) Human Rhinovirus B and C genomes from rural coastal Kenya. Genome Announcements, 4 (4). pp. 1-2. e00751. doi:10.1128/genomeA.00751-16 ISSN 2169-8287.
Owor, Betty E., Masankwa, Geoffrey N., Mwango, Lilian C., Njeru, Regina W., Agoti, Charles N. and Nokes, D. James (2016) Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11. BMC Infectious Diseases, 16 (1). doi:10.1186/s12879-016-1605-0 ISSN 1471-2334.
Kiti, Moses C., Tizzoni, Michele, Kinyanjui, Timothy M., Koech, Dorothy C., Munywoki, Patrick K., Meriac, Milosch, Cappa, Luca, Panisson, AndrΓ©, Barrat, Alain, Cattuto, Ciro and Nokes, D. James (2016) Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors. EPJ Data Science, 5 (1). doi:10.1140/epjds/s13688-016-0084-2 ISSN 2193-1127.
Otieno, James R., Agoti, Charles N., Gitahi, Caroline W., Bett, Ann, Ngama, Mwanajuma, Medley, Graham F, Cane, Patricia A. and Nokes, D. James (2016) Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. Journal of Virology, 90 (10). pp. 4990-5002. doi:10.1128/JVI.03105-15 ISSN 0022-538X.
WHO RSV Vaccine Consultation Expert Group (Including: Modjarrad, Kayvon, Giersing, Birgitte, Kaslow, David C., Smith, Peter G. and Moorthy, Vasee S.). (2016) WHO consultation on Respiratory Syncytial Virus Vaccine Development Report from a World Health Organization Meeting held on 23β24 March 2015. Vaccine, 34 (2). pp. 190-197. doi:10.1016/j.vaccine.2015.05.093 ISSN 0264-410X.
2015
Hollingsworth, T. DΓ©irdre, Langley, Ivor, Nokes, D. James, Macpherson, Eleanor E., McGivern, Gerry, Adams, Emily R., Bockarie, Moses J., Mortimer, Kevin, Reimer, Lisa J, Squire, Bertie, Torr, Stephen J. and Medley, Graham (2015) Infectious disease and health systems modelling for local decision making to control neglected tropical diseases. BMC Proceedings, 9 (Suppl 10). S6. doi:10.1186/1753-6561-9-S10-S6 ISSN 1753-6561.
Munywoki, Patrick K., Koech, Dorothy C., Agoti, Charles N., Bett, Ann, Cane, Patricia A., Medley, Graham F. and Nokes, D. James (2015) Frequent asymptomatic respiratory syncytial virus infections during an epidemic in a rural Kenyan household cohort. Journal of Infectious Diseases, 212 (11). pp. 1711-1718. doi:10.1093/infdis/jiv263 ISSN 0022-1899.
Kinyanjui, Timothy M., House, Thomas A., Kiti, Moses C., Cane, Patricia, Nokes, D. James and Medley, Graham (2015) Vaccine induced herd immunity for control of respiratory syncytial virus disease in a low-income country setting. PLoS One, 10 (9). pp. 1-16. e0138018. doi:10.1371/journal.pone.0138018 ISSN 1932-6203.
Agoti, Charles N., Otieno, James R., Ngama, Mwanajuma, Mwihuri, Alexander G., Medley, Graham, Cane, Patricia A., Nokes, D. James and Kirkegaard, K. (2015) Successive respiratory syncytial virus epidemics in local populations arise from multiple variant introductions, providing insights into virus persistence. Journal of Virology, 89 (22). pp. 11630-11642. doi:10.1128/JVI.01972-15 ISSN 0022-538X.
Agoti, Charles N., Otieno, James R., Munywoki, Patrick K., Mwihuri, Alexander G., Cane, Patricia, Nokes, D. James, Kellam, Paul, Cotten, Matthew and Perlman, S. (2015) Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing. Journal of Virology, Volume 89 (Number 7). pp. 3444-3454. doi:10.1128/JVI.03391-14 ISSN 0022-538X.
Nyiro, Joyce U., Sande, Charles, Mutunga, Martin, Kiyuka, Patience K., Munywoki, Patrick K., Scott, J. Anthony G. and Nokes, D. James (2015) Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya. Vaccine, 33 (15). pp. 1797-1801. doi:10.1016/j.vaccine.2015.02.039 ISSN 0264-410X.
Poletti, Piero, Merler, Stefano, Ajelli, Marco, Manfredi, Piero, Munywoki, Patrick K., Nokes, D. James and Melegaro, Alessia (2015) Evaluating vaccination strategies for reducing infant respiratory syncytial virus infection in low-income settings. BMC Medicine, Volume 13 (Number 1). pp. 1-11. Article number 49. doi:10.1186/s12916-015-0283-x ISSN 1741-7015.
Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Kibirige, N., Kipkoech, J., Cane, Patricia, Medley, Graham and Nokes, D. James (2015) Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding. Epidemiology and Infection, 143 (4). pp. 804-812. doi:10.1017/S0950268814001393 ISSN 0950-2688.
2014
Sande, Charles J., Cane, Patricia and Nokes, D. James (2014) The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants. Vaccine, Volume 32 (Number 37). pp. 4726-4729. doi:10.1016/j.vaccine.2014.05.038 ISSN 0264-410X.
Kiti, Moses Chapa, Kinyanjui, Timothy, Koech, Dorothy Chelagat, Munywoki, Patrick Kiio, Medley, Graham and Nokes, D. James (2014) Quantifying age-related rates of social contact using diaries in a rural coastal population of Kenya. PLoS One, Volume 9 (Number 8). Article number e104786. doi:10.1371/journal.pone.0104786 ISSN 1932-6203.
Munywoki, Patrick Kiio, Koech, Dorothy C., Agoti, Charles N., Lewa, Clement, Cane, Patricia, Medley, Graham and Nokes, D. James (2014) The source of respiratory syncytial virus infection in infants : a household cohort study in rural Kenya. Journal of Infectious Diseases, Volume 209 (Number 11). pp. 1685-1692. doi:10.1093/infdis/jit828 ISSN 0022-1899.
Agoti, Charles N., Otieno, James R., Gitahi, Caroline W., Cane, Patricia and Nokes, D. James (2014) Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya. Emerging Infectious Diseases , Volume 20 (Number 6). pp. 950-959. doi:10.3201/eid2006.131438 ISSN 1080-6059.
Agoti, Charles N., Mayieka, Lillian M., Otieno, James R., Ahmed, Jamal A., Fields, Barry S., Waiboci, Lilian W., Nyoka, Raymond, Eidex, Rachel B., Marano, Nina, Burton, Wagacha, Montgomery, Joel M., Breiman, Robert F. and Nokes, D. James (2014) Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya. BMC Infectious Diseases, Volume 14 (Number 1). Article number 178. doi:10.1186/1471-2334-14-178 ISSN 1471-2334.
2013
Agoti, Charles N., Gitahi, Caroline W., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Identification of group B respiratory syncytial viruses that lack the 60-nucleotide duplication after six consecutive epidemics of total BA dominance at coastal Kenya. Influenza and Other Respiratory Viruses, Volume 7 (Number 6). pp. 1008-1012. doi:10.1111/irv.12131 ISSN 1750-2640.
Sande, Charles J., Mutunga, M. N., Okiro, Emelda A., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Kinetics of the neutralizing antibody response to respiratory syncytial virus infections in a birth cohort. Journal of Medical Virology, Volume 85 (Number 11). pp. 2020-2025. doi:10.1002/jmv.23696 ISSN 0146-6615.
Sande, C. J., Mutunga, M. N., Medley, Graham, Cane, Patricia and Nokes, D. James (2013) Group- and genotype-specific neutralizing antibody responses against respiratory syncytial virus in infants and young children with severe pneumonia. Journal of Infectious Diseases, Volume 207 (Number 3). pp. 489-492. doi:10.1093/infdis/jis700 ISSN 0022-1899.
Fuller, James A., Summers, Aimee, Katz, Mark A., Lindblade, Kim A., Njuguna, Henry, Arvelo, Wences, Khagayi, Sammy, Emukule, Gideon, Linares-Perez, Nivaldo, McCracken, John, Nokes, D. James, Ngama, Mwanajuma, Kazungu, Sidi, Mott, Joshua A., Olsen, Sonja J., Widdowson, Marc-Alain and Feikin, Daniel R. (2013) Estimation of the national disease burden of influenza-associated severe acute respiratory illness in Kenya and Guatemala : a novel methodology. PLoS One, Volume 8 (Mumber 2). Article number e56882. doi:10.1371/journal.pone.0056882 ISSN 1932-6203.
Munywoki, Patrick Kiio, Ohuma, Eric O., Ngama, Mwanajuma, Bauni, Evasius, Scott, J. Anthony G. and Nokes, D. James (2013) Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children, Kenya. Emerging Infectious Diseases , Volume 19 (Number 2). pp. 223-229. doi:10.3201/eid1902.120940 ISSN 1080-6059.
Anderson, L. J., Dormitzer, P. R., Nokes, D. James, Rappuoli, R., Roca, A. and Graham, B.S. (2013) Strategic priorities for respiratory syncytial virus (RSV) vaccine development. Vaccine, Volume 31 . B209-B215. doi:10.1016/j.vaccine.2012.11.106 ISSN 0264-410X.
2012
Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann and Nokes, D. James (2012) The incidence and clinical burden of respiratory syncytial virus disease identified through hospital outpatient presentations in Kenyan children. PLoS One, Vol.7 (No.12). e52520. doi:10.1371/journal.pone.0052520 ISSN 1932-6203.
Agoti, Charles N., Mwihuri, Alexander G., Sande, Charles J., Onyango, Clayton O., Medley, Graham, Cane, Patricia and Nokes, D. James (2012) Genetic relatedness of infecting and reinfecting respiratory syncytial virus strains identified in a birth cohort from rural Kenya. Journal of Infectious Diseases, Volume 206 (Number 10). pp. 1532-1541. doi:10.1093/infdis/jis570 ISSN 0022-1899.
van Hoek, Albert Jan, Ngama, Mwanajuma, Ismail, Amina, Chuma, Jane, Cheburet, Samuel, Mutonga, David, Kamau, Tatu and Nokes, D. James (2012) A cost effectiveness and capacity analysis for the introduction of universal rotavirus vaccination in Kenya : comparison between Rotarix and RotaTeq vaccines. PLoS One, Vol.7 (No.10). e47511. doi:10.1371/journal.pone.0047511 ISSN 1932-6203.
Webb, Clare, Ngama, Mwanajuma, Ngatia, Anthony, Shebbe, Mohammed, Morpeth, Susan, Mwarumba, Salim, Bett, Ann, Nokes, D. James, Seale, Anna C., Kazungu, Sidi, Munywoki, Patrick, Hammitt, Laura L., Scott, J Anthony G. and Berkley, James A. (2012) Treatment failure among Kenyan children with severe pneumonia--a cohort study. The Pediatric infectious disease journal, Volume 31 (Number 9). e152-e157. doi:10.1097/INF.0b013e3182638012 ISSN 1532-0987.
Gravel, Genevieve (2012) The use of a pediatric prophylactic vaccine for respiratory syncytial virus in Kenya. KEMRI-Wellcome Trust Research Programme.
Onyango, Clayton O., Welch, Stephen R., Munywoki, Patrick K., Agoti, Charles N., Bett, Ann, Ngama, Mwanajuma, Myers, Richard, Cane, Patricia and Nokes, D. James (2012) Molecular epidemiology of human rhinovirus infections in Kilifi, coastal Kenya. Journal of Medical Virology, Volume 84 (Number 5). pp. 823-831. doi:10.1002/jmv.23251 ISSN 0146-6615.
Hammitt, L. L., Kazungu, S., Morpeth, S. C., Gibson, D. G., Mvera, B., Brent, A. J., Mwarumba, S., Onyango, C. O., Bett, A., Akech, D. O., Murdoch, D. R., Nokes, D. James and Scott, J. A. G. (2012) A preliminary study of pneumonia etiology among hospitalized children in Kenya. Clinical Infectious Diseases, Vol.54 (Suppl.2). S190-S199. doi:10.1093/cid/cir1071 ISSN 1058-4838.
Onyango, Clayton O., Njeru, Regina, Kazungu, Sidi, Achilla, Rachel, Bulimo, Wallace, Welch, Stephen R., Cane, Patricia, Gunson, Rory N., Hammitt, Laura L., Scott, J. Anthony G., Berkley, James A. and Nokes, D. James (2012) Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010. Journal of Infectious Diseases, Volume 206 (Supplement 1). S61-S67. doi:10.1093/infdis/jis536 ISSN 0022-1899.
Ohuma, E. O., Okiro, E. A., Ochola, R., Sande, C. J., Cane, Patricia, Medley, Graham, Bottomley, C. and Nokes, D. James (2012) The natural history of respiratory syncytial virus in a birth cohort : the influence of age and previous infection on reinfection and disease. American Journal of Epidemiology, Vol.176 (No.9). pp. 794-802. doi:10.1093/aje/kws257 ISSN 0002-9262.
2011
Munywoki, Patrick, Hamid, Fauzat, Mutunga, Martin, Welch, Steve, Cane, Patricia and Nokes, D. James (2011) Improved detection of respiratory viruses in pediatric outpatients with acute respiratory illness by real-time PCR using nasopharyngeal flocked swabs. Journal of Clinical Microbiology, Vol.49 (No.9). pp. 3365-3367. doi:10.1128/JCM.02231-10 ISSN 0095-1137.
Nyiro, Joyce U., Sanders, Eduard J., Ngetsa, Caroline, Wale, Steve, Awuondo, Ken, Bukusi, Elizabeth Anne, Price, Matthew A., Amornkul, Pauli N. and Nokes, D. James (2011) Seroprevalence, predictors and estimated incidence of maternal and neonatal Herpes Simplex Virus Type 2 infection in semi-urban women in Kilifi, Kenya. BMC Infectious Diseases, Vol.11 (No.155). doi:10.1186/1471-2334-11-155 ISSN 1471-2334.
Hammitt, L. L., Kazungu, S., Welch, S. (Steve), Bett, Anne, Onyango, Clayton O., Gunson, R. N., Scott, J. Anthony G. and Nokes, D. James (2011) Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of Clinical Microbiology, Volume 49 (Number 6). pp. 2318-2320. doi:10.1128/JCM.02605-10 ISSN 0095-1137.
MoΓ―si, Jennifer, Gatakaa, Hellen, Berkley, James A., Maitland, Kathryn, Mturi, Neema, Newton, Charles, Njuguna, Patricia, Nokes, D. James, Ojal, John, Bauni, Evasius, Tsofa, Benjamin, Peshu, Norbert, Marsh, Kevin, Williams, Thomas and Scott, J. Anthony G. (2011) Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis. Bulletin of the World Health Organization, Vol.89 (No.10). pp. 725-732. doi:10.2471/BLT.11.089235 ISSN 0042-9686.
MoΓ―si, Jennifer C, Nokes, D. James, Gatakaa, Hellen, Williams, Thomas N, Bauni, Evasius, Levine, Orin S and Scott, J Anthony G (2011) Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization, Vol.89 (No.2). pp. 102-111. doi:10.2471/BLT.10.080796 ISSN 0042-9686.
Mwambi, H., Ramroop, S., White, L., Okiro, E., Nokes, D. James, Shkedy, Z. and Molenberghs, G. (2011) A frequentist approach to estimating the force of infection for a respiratory disease using repeated measurement data from a birth cohort. Statistical Methods in Medical Research , Vol.20 (No.5). pp. 551-570. doi:10.1177/0962280210385749 ISSN 0962-2802.
2010
Agoti, Charles N., Mbisa, Jean L., Bett, Ann, Medley, Graham, Nokes, D. James and Cane, Patricia (2010) Intrapatient variation of the respiratory syncytial virus attachment protein gene. Journal of Virology, Vol.84 (No.19). pp. 10425-10428. doi:10.1128/JVI.01181-10 ISSN 0022-538X.
Nair, Harish, Gessner, Bradford D., Nokes, D. James, Theodoratou, Evropi, Rudan, Igor, Madhi, Shabir A., Simoes, Eric A. F. and Campbell, Harry (2010) Childhood mortality due to respiratory syncytial virus - authors' reply. Lancet, Vol.376 (No.9744). pp. 872-873. ISSN 0140-6736 doi:10.1016/S0140-6736(10)61410-9
Nokes, D. James, Peenze, Ina, Netshifhefhe, Lufuno, Abwao, John, De Beer, Mariet C., Seheri, Mapaseka, Williams, Thomas N., Page, Nicola and Steele, Duncan (2010) Rotavirus genetic diversity, disease association, and temporal change in hospitalized rural Kenyan children. The Journal of Infectious Diseases, Vol.202 (Suppl.1). S180-S186. doi:10.1086/653566 ISSN 0022-1899.
Berkley, James A., Munywoki, Patrick, Ngama, Mwanajuma, Kazungu, Sidi, Abwao, John, Bett, Anne, Lassauniere, Ria, Kresfelder, Tina, Cane, Patricia, Venter, Marietjie, Scott, J. Anthony G. and Nokes, D. James (2010) Viral etiology of severe pneumonia among Kenyan infants and children. JAMA: The Journal of the American Medical Association, Vol.303 (No.20). pp. 2051-2057. doi:10.1001/jama.2010.675 ISSN 0098-7484.
Nair, Harish, Nokes, D. James, Gessner, Bradford D., Dherani, Mukesh, Madhi, Shabir A., Singleton, Rosalyn J., O'Brien, Katherine L., Roca, Anna, Wright, Peter F., Bruce, Nigel et al.
(2010)
Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis.
The Lancet, Vol.375
(No.9725).
pp. 1545-1555.
doi:10.1016/S0140-6736(10)60206-1
ISSN 0140-6736.
Okiro, E. A., White, L. J., Ngama, Mwanajuma, Cane, Patricia, Medley, Graham and Nokes, D. James (2010) Duration of shedding of respiratory syncytial virus in a community study of Kenyan children. BMC Infectious Diseases, Vol.10 (Article 15). doi:10.1186/1471-2334-10-15 ISSN 1471-2334.
2009
Ochola, Rachel, Sande, Charles, Fegan, Greg, Scott, P. D. (Paul D.), Medley, Graham, Cane, Patricia and Nokes, D. James (2009) The level and duration of RSV-specific maternal IgG in infants in Kilifi Kenya. PLoS One, Vol.4 (No.12). e8088. doi:10.1371/journal.pone.0008088 ISSN 1932-6203.
Nokes, D. James, Ngama, Mwanajuma, Bett, Anne, Abwao, John, Munywoki, Patrick, English, M. (Mike), Scott, J. Anthony G., Cane, Patricia and Medley, Graham (2009) Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical Infectious Diseases, Vol.49 (No.9). pp. 1341-1349. doi:10.1086/606055 ISSN 1058-4838.
Anderson, Roy M., Hollingsworth, T. DΓ©irdre and Nokes, D. James (2009) Mathematical models of transmission and control. In: Detels, Roger and Beaglehole, Robert and Gulliford, Mary Ann and Lansang, Martin, (eds.) Oxford Textbook of Public Health. Oxford ; New York: Oxford University Press. ISBN 9780199218707
Medley, Graham and Nokes, D. James (2009) Does viral diversity matter? Science, Vol.325 (No.5938). pp. 274-275. ISSN 0036-8075 doi:10.1126/science.1177475
Mwaniki, M.K., Nokes, D. James, Ignas, J., Munywoki, P., Ngama, Mwanajuma, Newton, R. J. C., Maitland, Kathryn and Berkley, James A. (2009) Emergency triage assessment for hypoxaemia in neonates and young children in a Kenyan hospital : an observational study. Bulletin of the World Health Organization, Vol.87 (No.4). pp. 263-324. doi:10.2471/BLT.07.049148 ISSN 0042-9686.
Ohuma, E. O., Okiro, E. A., Bett, A., Abwao, John, Were, S., Samuel, Dhan, Vyse, A. J., Gay, N. J., Brown, D. W. G. and Nokes, D. James (2009) Evaluation of a measles vaccine campaign by oral-fluid surveys in a rural Kenyan district: interpretation of antibody prevalence data using mixture models. Epidemiology and Infection, Vol.13 (No.2). pp. 227-233. doi:10.1017/S0950268808000848 ISSN 0950-2688.
2008
White, Lisa J., Buttery, J., Cooper, Ben S., Nokes, D. James and Medley, Graham (2008) Rotavirus within day care centres in Oxfordshire, UK : characterization of partial immunity. Journal of The Royal Society Interface, Vol.5 (No.29). pp. 1481-1490. doi:10.1098/rsif.2008.0115 ISSN 1742-5689.
Nokes, D. James and Cane, Patricia (2008) New strategies for control of respiratory syncytial virus infection. Current Opinion in Infectious Diseases, Vol.21 (No.6). pp. 639-643. ISSN 0951-7375 doi:10.1097/QCO.0b013e3283184245
Nigatu, Wondatir, Samuel, Dhan, Cohen, Bernard, Cumberland, Phillippa, Lemma, Eshetu, Brown, David W. G. and Nokes, D. James (2008) Evaluation of a measles vaccine campaign in Ethiopia using oral-fluid antibody surveys. Vaccine, Vol.26 (No.37). pp. 4769-4774. ISSN 0264-410X doi:10.1016/j.vaccine.2008.07.005
Nokes, D. James, Abwao, John, Pamba, Allan, Peenze, Ina, Dewar, John, Maghenda, J. Kamino, Gatakaa, Hellen, Bauni, Evasius, Scott, J. Anthony G., Maitland, Kathryn and Williams, Thomas N. (2008) Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, Kenya. PL o S Medicine, Vol.5 (No.7). doi:10.1371/journal.pmed.0050153 ISSN 1549-1277.
Okiro, Emelda A., Ngama, Mwanajuma, Bett, Ann, Cane, Patricia, Medley, Graham and Nokes, D. James (2008) Factors associated with increased risk of progression to respiratory syncytial virus-associated pneumonia in young Kenyan children. Tropical Medicine & International Health, Volume 13 (Number 7). pp. 914-926. doi:10.1111/j.1365-3156.2008.02092.x ISSN 1360-2276.
Okiro, Emelda A., Sande, Charles, Mutunga, Martin, Medley, Graham, Cane, Patricia and Nokes, D. James (2008) Identifying infections with respiratory syncytial virus by using specific immunoglobulin G (IgG) and IgA enzyme-linked immunosorbent assays with oral-fluid samples. Journal of Clinical Microbiology, Vol.46 (No.5). pp. 1659-1662. doi:10.1128/JCM.02190-07 ISSN 0095-1137.
Nokes, D. James, Okiro, Emelda A., Ngama, Mwanajuma, Ochola, Rachel, White, Lisa J., Scott, P. D. (Paul D.), English, M. (Mike), Cane, Patricia and Medley, Graham (2008) Respiratory syncytial virus infection and disease in infants and young children observed from birth in Kilifi district, Kenya. Clinical Infectious Diseases, Vol.46 (No.1). pp. 50-57. doi:10.1086/524019 ISSN 1058-4838.
2007
Scott, P. D. (Paul D.), Ochola, Rachel, Sande, Charles, Ngama, Mwanajuma, Okiro, Emelda A., Medley, Graham, Nokes, D. James and Cane, Patricia (2007) Comparison of strain-specific antibody responses during primary and secondary infections with respiratory syncytial virus. Journal of Medical Virology, Vol.79 (No.12). pp. 1943-1950. doi:10.1002/jmv.20999 ISSN 0146-6615.
White, L. J., Mandl, J. N., Gomes, M. G. M., Bodley-Tickell, A. T., Cane, Patricia, Perez-Brena, P., Aguilar, J. C., Siqueira, M. M., Portes, S. A., Straliotto, S. M., Waris, M., Nokes, D. James and Medley, Graham (2007) Understanding the transmission dynamics of respiratory syncytial virus using multiple time series and nested models. Mathematical Biosciences, Vol.209 (No.1). pp. 222-239. doi:10.1016/j.mbs.2006.08.018 ISSN 0025-5564.
Wilson, Jamie N., Nokes, D. James, Medley, Graham and Shouval, Daniel (2007) Mathematical model of the antibody response to hepatitis B vaccines: implications for reduced schedules. Vaccine, Vol.25 (No.18). pp. 3705-3712. doi:10.1016/j.vaccine.2007.01.012 ISSN 0264-410X.
2006
Nigatu, W., Nokes, D. James, Afework, A., Brown, D. W. G., Cutts, F. T. and Jin, L. (2006) Serological and molecular epidemiology of measles virus outbreaks reported in Ethiopia during 2000-2004. JOURNAL OF MEDICAL VIROLOGY, 78 (12). pp. 1648-1655. doi:10.1002/jmv.20750 ISSN 0146-6615.
2005
White, L. J., Waris, M., Cane, Patricia, Nokes, D. James and Medley, Graham (2005) The transmission dynamics of groups A and B human respiratory syncytial virus (hRSV) in England & Wales and Finland: seasonality and cross-protection. Epidemiology and Infection, Vol.13 (No.2). pp. 279-289. doi:10.1017/S0950268804003450 ISSN 0950-2688.
2003
Abebe, A., Nokes, D. James, Dejene, A., Enquselassie, F., Messele, T. and Cutts, Felicity (2003) Seroepidemiology of hepatitis B virus in Addis Ababa Ethiopia: transmission patterns and vaccine control. Epidemiology and Infection, Vol.13 (No.1). pp. 757-770. doi:10.1017/S0950268803008574 ISSN 0950-2688.
Enquselassie, F., Ayele, W., Dejene, A., Messele, T., Abebe, A., Cutts, Felicity and Nokes, D. James (2003) Seroepidemiology of measles in Addis Ababa Ethiopia: implications for control through vaccination. Epidemiology and Infection, Vol.13 (No.3). pp. 507-519. doi:10.1017/S0950268803008446 ISSN 0950-2688.
Gay, N. J., Vyse, A. J., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James (2003) Improving sensitivity of oral fluid testing in IgG prevalence studies: application of mixture models to a rubella antibody survey. Epidemiology and Infection, Vol.13 (No.2). pp. 285-291. doi:10.1017/S0950268802008051 ISSN 0950-2688.
2000
Cutts, Felicity, Abebe, A., Messele, T., Dejene, A., Enquselassie, F., Nigatu, Wondatir and Nokes, D. James (2000) Sero-epidemiology of rubella in the urban population of Addis Ababa Ethiopia. Epidemiology and Infection, Vol.12 (No.3). pp. 467-479. doi:10.1017/S0950268899003532 ISSN 0950-2688.
Wilson, J. N., Nokes, D. James and Carman, W. (William) (2000) Predictions of the emergence of vaccine-resistant hepatitis B in The Gambia using a mathematical model. Epidemiology and Infection, Vol.124 (No.2). pp. 295-307. doi:10.1017/S0950268800003605 ISSN 0950-2688.
1998
Cox, M. J., Azevedo, R. S., Nokes, D. James, Beards, G. M., McCrae, Malcolm A., Massad, Eduardo and Medley, Graham (1998) Seroepidemiology of group A rotavirus in suburban SΓ£o Paulo, Brazil. Epidemiology and Infection, Vol.120 . pp. 327-334. doi:10.1017/S0950268898008759 ISSN 0950-2688.
1996
Edmunds, W. John , Medley, Graham, Nokes, D. James, O'Callaghan, C. J., Whittle, H. C. and Hall, A. J. (Andrew James) (1996) Epidemiological patterns of hepatitis B virus (HBV) in highly endemic areas. Epidemiology and Infection, Vol.117 (No.2). pp. 313-325. doi:10.1017/S0950268800001497 ISSN 0950-2688.
This list was generated on Thu Mar 28 20:53:25 2024 GMT.