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Number of items: 83.
2024
Vlachou, Denise, Veretennikova, Maria, Usselmann, Laura Emma Jane, Vasilyev, Vadim, Ott, Sascha, Bjarnason, Georg A., Dallmann, Robert, Lévi, Francis A. and Rand, David A. (2024) TimeTeller : a tool to probe the circadian clock as a multigene dynamical system. PLoS Computational Biology, 20 (2). e1011779. doi:10.1371/journal.pcbi.1011779 ISSN 1553-7358.
Vlachou, Denise, Veretennikova, Maria, Usselmann, Laura Emma Jane, Vasilyev, Vadim, Ott, Sascha, Bjarnason, Georg A., Dallmann, Robert, Lévi, Francis A. and Rand, David A. (2024) TimeTeller : a tool to probe the circadian clock as a multigene dynamical system. PLoS Computational Biology . ISSN 1553-7358. (In Press)
2022
Sáez, M., Briscoe, J. and Rand, D. A. (David A.) (2022) Dynamical landscapes of cell fate decisions. Interface Focus, 12 (4). 20220002. doi:10.1098/rsfs.2022.0002 ISSN 2042-8898.
Sáez, Meritxell, Blassberg, Robert, Camacho-Aguilar, Elena, Siggia, Eric D., Rand, David A. and Briscoe, James (2022) Statistically derived geometrical landscapes capture principles of decision-making dynamics during cell fate transitions. Cell Systems, 13 (1). pp. 12-28. doi:10.1016/j.cels.2021.08.013 ISSN 2405-4712.
2021
Rand, David A., Raju, Archishman, Sáez, Meritxell, Corson, Francis and Siggia, Eric D. (2021) Geometry of gene regulatory dynamics. Proceedings of the National Academy of Sciences of the United States of America, 118 (38). e2109729118. doi:10.1073/pnas.2109729118 ISSN 0027-8424.
Camacho-Aguilar, Elena, Warmflash, Aryeh and Rand, D. A. (David A.) (2021) Quantifying cell transitions in C. elegans with data-fitted landscape models. PLoS Computational Biology, 17 (6). e1009034. doi:10.1371/journal.pcbi.1009034 ISSN 1553-7358.
McNamara, Anne V, Awais, Raheela, Momiji, Hiroshi, Dunham, Lee, Featherstone, Karen, Harper, Claire V, Adamson, Antony A, Semprini, Sabrina, Jones, Nicholas A, Spiller, David G, Mullins, John J, Finkenstädt, Bärbel, Rand, David A., White, Michael R. H. and Davis, Julian R. E. (2021) Transcription factor Pit-1 affects transcriptional timing in the dual-promoter human prolactin gene. Endocrinology, 162 (4). bqaa249. doi:10.1210/endocr/bqaa249 ISSN 0013-7227.
2020
Minas, Giorgos, Woodcock, Dan J., Ashall, Louise, Harper, Claire V., White, Michael R. H. and Rand, David A. (2020) Multiplexing information flow through dynamic signalling systems. PLoS Computational Biology, 16 (8). e1008076. doi:10.1371/journal.pcbi.1008076 ISSN 1553-734X.
2019
Momiji, Hiroshi, Hassall, Kirsty, Featherstone, Karen, McNamara, Anne, Patist, Amanda, Spiller, David G., Christian, Helen, White, Michael R. H., Davis, Julian R. E., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2019) Disentangling juxtacrine from paracrine signalling in dynamic tissue. PLoS Computational Biology, 15 (6). e1007030. doi:10.1371/journal.pcbi.1007030 ISSN 1553-7358.
Minas, Giorgis and Rand, David A. (2019) Parameter sensitivity analysis for biochemical reaction networks. Mathematical Biosciences and Engineering, 16 (5). pp. 3965-3987. doi:10.3934/mbe.2019196 ISSN 1547-1063.
Vlachou, Denise, Bjarnason, Georg A., Giacchetti, Sylvie, Lévi, Francis A. and Rand, David A. (2019) TimeTeller : a new tool for precision circadian medicine and cancer prognosis [preprint]. Working Paper. Cold Spring Harbor: bioRXiv. (Unpublished)
2018
Harper, Claire V., Woodcock, Dan J., Lam, Connie, Garcia-Albornoz, Manuel, Adamson, Antony, Ashall, Louise, Rowe, William, Downton, Polly J., Schmidt, Lorraine, West, Simon, Spiller, David G., Rand, David A. and White, Michael R. H. (2018) Temperature regulates NF-κB dynamics and function through timing of A20 transcription. Proceedings of the National Academy of Sciences of the United States of America, 115 (22). E5243-E5249. doi:10.1073/pnas.1803609115 ISSN 1091-6490.
2017
Dunham, Lee S. S., Momiji, Hiroshi, Harper, Claire V., Downton, Polly J., Hey, Kirsty L., McNamara, Anne, Featherstone, Karen, Spiller, David G., Rand, David A., Finkenstädt, Bärbel, White, Michael R. H. and Davis, Julian R.E. (2017) Asymmetry between activation and deactivation during a transcriptional pulse. Cell Systems, 5 (6). 646-653.E5. doi:10.1016/j.cels.2017.10.013 ISSN 2405-4712.
Minas, Giorgos, Jenkins, Dafyd J., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2017) Inferring transcriptional logic from multiple dynamic experiments. Bioinformatics, 33 (21). pp. 3437-3444. doi:10.1093/bioinformatics/btx407 ISSN 1367-4803.
Hughes, Michael E., Abruzzi, Katherine C., Allada, Ravi, Anafi, Ron, Arpat, Alaaddin Bulak, Asher, Gad, Baldi, Pierre, Bekker, Charissa de, Bell-Pedersen, Deborah, Blau, Justin et al.
(2017)
Guidelines for genome-scale analysis of biological rhythms.
Journal of Biological Rhythms, 32
(5).
pp. 380-393.
doi:10.1177/0748730417728663
ISSN 0748-7304.
Minas, Giorgos and Rand, D. A. (David A.) (2017) Long-time analytic approximation of large stochastic oscillators : simulation, analysis and inference. PLoS Computational Biology, 13 (7). e1005676. doi:10.1371/journal.pcbi.1005676 ISSN 1553-7358.
Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J. (Maria João), Rand, David A. and Finkenstädt, Bärbel (2017) ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. BMC Bioinformatics, 18 (316). doi:10.1186/s12859-017-1695-8 ISSN 1471-2105.
Ballesta, Annabelle, Innominato, Pasquale F., Dallmann, Robert, Rand, D. A. (David A.) and Lévi, Francis A. (2017) Systems chronotherapeutics. Pharmacological Reviews, 69 (2). pp. 161-199. doi:10.1124/pr.116.013441 ISSN 0031-6997.
2016
Atia, Jolene, McCloskey, Conor, Shmygol, Anatoly, Rand, D. A. (David A.), Berg, Hugo van den and Blanks, Andrew M. (2016) Reconstruction of cell surface densities of ion pumps, exchangers, and channels from mRNA expression, conductance kinetics, whole-cell calcium, and current-clamp voltage recordings, with an application to human uterine smooth muscle cells. PLoS Computational Biology, 12 (4). e1004828. doi:10.1371/journal.pcbi.1004828 ISSN 1553-7358.
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
ISSN 1040-4651.
Domijan, Mirela, Brown, Paul E., Shulgin, Boris V. and Rand, D. A. (David A.) (2016) PeTTSy : a computational tool for perturbation analysis of complex systems biology models. BMC Bioinformatics, 17 (124). doi:10.1186/s12859-016-0972-2 ISSN 1471-2105.
Featherstone, Katie, Hey, Kirsty L., Momiji, Hiroshi, McNamara, A. V., Patist, A. L., Woodburn, J., Spiller , D. G., Christian, H. C., McNeilly, A. S., Mullins, J. J. , Finkenstädt, Bärbel, Rand, D. A. (David A.), White, M. R. H. and David, J. R. E. (2016) Spatially coordinated dynamic gene transcription in living pituitary tissue. eLife, 5 . e08494. doi:10.7554/eLife.08494 ISSN 2050-084X.
Adamson, Antony, Boddington, Christopher, Downton, Polly, Rowe, William, Bagnall, James, Lam, Connie, Maya-Mendoza, Apolinar, Schmidt, Lorraine, Harper, Claire V., Spiller, David G., Rand, David A., Jackson, Dean A., White, Michael R. H. and Paszek, Pawel (2016) Signal transduction controls heterogeneous NF-κB dynamics and target gene expression through cytokine-specific refractory states. Nature Communications, 7 . 12057. doi:10.1038/ncomms12057 ISSN 2041-1723.
2015
Lewis, Laura, Polanskia, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan D., Penfold, Christopher A., Jenkins, Dafyd J., Hills, Claire E., Baxter, Laura et al.
(2015)
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000.
The Plant Cell, 27
(11).
pp. 3038-3064.
doi:10.1105/tpc.15.00471
ISSN 1040-4651.
Hey, Kirsty L., Momiji, Hiroshi, Featherstone, Karen, Davis, Julian R.E., White, Michael R.H., Rand, D. A. (David A.) and Finkenstädt, Bärbel (2015) A stochastic transcriptional switch model for single cell imaging data. Biostatistics, 16 (4). pp. 655-669. doi:10.1093/biostatistics/kxv010 ISSN 1465-4644.
Xue, Mingzhan, Momiji, Hiroshi, Rabbani, Naila, Barker, Guy C., Bretschneider, Till, Shmygol, Anatoly, Rand, D. A. (David A.) and Thornalley, Paul J. (2015) Frequency modulated translocational oscillations of Nrf2 mediate the antioxidant response element cytoprotective transcriptional response. Antioxidants & Redox Signaling, 23 (7). pp. 613-629. doi:10.1089/ars.2014.5962 ISSN 1523-0864.
Xue, Mingzhan, Momiji, Hiroshi, Rabbani, Naila, Bretschneider, Till, Rand, D. A. (David A.) and Thornalley, Paul J. (2015) Frequency modulated translocational oscillations of Nrf2, a transcription factor functioning like a wireless sensor. Biochemical Society Transactions, 43 (4). pp. 669-673. doi:10.1042/BST20150060 ISSN 0300-5127.
Feillet, Céline, Horst, Gijsbertus Theodorus Johannes van der, Lévi, Francis A., Rand, D. A. and Delaunay, Franck (2015) Coupling between the circadian clock and cell cycle oscillators : implication for healthy cells and malignant growth. Frontiers in Neurology, Volume 6 . Article number 96. doi:10.3389/fneur.2015.00096 ISSN 1664-2295.
Domijan, Mirela and Rand, D. A. (David A.) (2015) Using constraints and their value for optimization of large ODE systems. Journal of The Royal Society Interface, Volume 12 (Number 104). Article number 20141303. doi:10.1098/rsif.2014.1303 ISSN 1742-5689.
2014
McCloskey, Conor, Rada, Cara, Bailey, Elizabeth H., McCavera, Samantha, Berg, Hugo van den , Atia, Jolene, Rand, D. A., Shmygol, Anatoly, Chan, Yi-Wah, Quenby, Siobhan et al.
(2014)
The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
EMBO Molecular Medicine, Volume 6
(Number 9).
pp. 1161-1174.
doi:10.15252/emmm.201403944
ISSN 1757-4676.
Feillet, C., Krusche, Peter, Tamanini, F., Janssens, R. C., Downey, Mike J., Martin, P., Teboul, M., Saito, S., Lévi, Francis A., Bretschneider, Till, van der Horst, G. T. J., Delaunay, F. and Rand, D. A. (David A.) (2014) Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 27). pp. 9828-9833. doi:10.1073/pnas.1320474111 ISSN 0027-8424.
Sidaway-Lee, Kate, Costa, Maria J. (Maria João), Rand, D. A. (David A.), Finkenstädt, Bärbel and Penfield, Steven (2014) Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response. Genome Biology, Volume 15 (Number 3). Article number R45. doi:10.1186/gb-2014-15-3-r45 ISSN 1474-7596.
2013
Almeida, João P., Fisher, Albert M., Pinto, Alberto A. and Rand, D. A. (David A.) (2013) Anosov diffeomorphisms. Discrete and Continuous Dynamical Systems (Supplement SI). pp. 837-845. ISSN 1078-0947.
Croft, Wayne D., Hills, Claire E., McCann, Eilish Clare, Bond, Michael, Esparza Franco, Manuel A., Bennett, Jeanette, Rand, D. A. (David A.), Davey, John and Ladds, Graham (2013) A physiologically required G protein-coupled receptor (GPCR)-regulator of G protein signaling (RGS) interaction that compartmentalizes RGS activity. Journal of Biological Chemistry, Volume 288 (Number 38). pp. 27327-27342. doi:10.1074/jbc.M113.497826 ISSN 0021-9258.
Woodcock, Dan J., Vance, Keith W., Komorowski, Michal, Koentges, Georgy, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy number. Bioinformatics, Volume 29 (Number 12). pp. 1519-1525. doi:10.1093/bioinformatics/btt201 ISSN 1367-4803.
Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020 ISSN 1465-4644.
Jenkins, Dafyd J., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2013) A temporal switch model for estimating transcriptional activity in gene expression. Bioinformatics, Volume 29 (Number 9). pp. 1158-1165. doi:10.1093/bioinformatics/btt111 ISSN 1367-4803.
Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7 ISSN 1744-4292.
Finkenstädt, Bärbel, Woodcock, Dan J., Komorowski, Michal, Harper, Claire V., Davis, Julian R. E., White, Mike R. H. and Rand, D. A. (David A.) (2013) Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation : an application to single cell data. Annals of Applied Statistics, Volume 7 ( Number 4). pp. 1960-1982. ISSN 1932-6157.
2012
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
2011
Harper, Claire V., Finkenstädt, Bärbel, Woodcock, Dan J., Friedrichsen, Sönke, Semprini, Sabrina, Ashall, Louise, Spiller, David G., Mullins, John J., Rand, D. A. (David A.), Davis, Julian R. E. and White, Michael R. H. (2011) Dynamic analysis of stochastic transcription cycles. PLos Biology, Vol.9 (No.4). doi:10.1371/journal.pbio.1000607 ISSN 1545-7885.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Lévi, Francis A., Mosekilde, E. and Rand, D. A. (David A.) (2011) Advancing systems medicine and therapeutics through biosimulation. Interface Focus, Vol.1 (No.1). pp. 3-6. doi:10.1098/rsfs.2010.0019 ISSN 2042-8898.
Domijan, Mirela and Rand, D. A. (David A.) (2011) Balance equations can buffer noisy and sustained environmental perturbations of circadian clocks. Interface Focus, Vol.1 (No.1). pp. 177-186. doi:10.1098/rsfs.2010.0007 ISSN 2042-8898.
Almeida, João P., Fisher, Albert M., Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Anosov and circle diffeomorphisms. In: Peixoto, Mauricio Matos and Pinto, Alberto A. and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science I. Springer Proceedings in Mathematics, Vol.1 . Berlin ; Heidelberg: Springer, pp. 11-23. ISBN 9783642114557
Sparrow, Colin and Strien, Sebastian van (2011) Dynamics associated to games (fictitious play) with chaotic behavior. In: Peixoto, Mauricio Matos and Pinto, Alberto Adrego and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science I. Springer proceedings in mathematics, Vol.1 . Berlin ; Heidelberg ; New York: Springer, pp. 747-759. ISBN 9783642114564
MacKay, Robert S. (2011) Existence of invariant circles for infinitely renormalisable area-preserving maps. In: Peixoto, Mauricio Matos and Pinto, Alberto Adrego and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science I. Springer proceedings in mathematics, Vol.1 . Berlin ; Heidelberg ; New York: Springer, pp. 631-636. ISBN 9783642114564
Rand, D. A. (David A.) (2011) Network control analysis for time-dependent dynamical states. In: Peixoto, Mauricio Matos and Pinto, Alberto Adrego and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science II. Springer proceedings in mathematics, Vol.2 . Berlin ; Heidelberg ; New York: Springer, pp. 1-24. ISBN 9783642147883
Pollicott, Mark and Sharp, Richard (2011) On the Hannay–Ozorio De Almeida sum formula. In: Peixoto, Mauricio Matos and Pinto, Alberto Adrego and Rand, D. A. (David A.), (eds.) Dynamics, Games and Science II. Springer Proceedings in Mathematics, Vol.2 . Berlin ; Heidelberg: Springer, pp. 575-590. ISBN 9783642147876
Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108 ISSN 0027-8424.
Pinto, Alberto A. and Rand, D. A. (David A.) (2011) Uniformly hyperbolic diffeomorphisms in every surfaces. Journal of Difference Equations and Applications, Vol.17 (No.7). pp. 1031-1047. doi:10.1080/10236190902964265 ISSN 1023-6198.
2010
Edwards, Kieron D., Akman, Ozgur E., Knox, Kirsten, Lumsden, P. J., Thomson, Adrian W., Brown, Paul E., Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, D. A. and Millar, A. J. (2010) Quantitative analysis of regulatory flexibility under changing environmental conditions. Molecular Systems Biology, Vol.6 (No.424). doi:10.1038/msb.2010.81 ISSN 1744-4292.
Turner, David A., Paszek, Pawel, Woodcock, Dan J., Nelson, David E., Horton, Caroline A., Wang, Yunjiao, Spiller, David G., Rand, D. A. (David A.), White, Michael R. H. and Harper, Claire V. (2010) Physiological levels of TNFα stimulation induce stochastic dynamics of NF-kB responses in single living cells. Journal of Cell Science, Vol.123 (No.16). pp. 2834-2843. doi:10.1242/jcs.069641 ISSN 0021-9533.
Akman, Ozgur E., Rand, D. A. (David A.), Brown, Paul E. and Millar, A. J. (Andrew J.) (2010) Robustness from flexibility in the fungal circadian clock. BMC Systems Biology, Vol.4 (No.88). doi:10.1186/1752-0509-4-88 ISSN 1752-0509.
Paszek, Pawel, Ryan, Sheila, Ashall, Louise, Sillitoe, Kate, Harper, Claire V., Spiller, David G., Rand, D. A. (David A.) and White, Michael R. H. (2010) Population robustness arising from cellular heterogeneity. Proceedings of the National Academy of Sciences of the United States of America, Vol.107 (No.25). pp. 11644-11649. doi:10.1073/pnas.0913798107 ISSN 0027-8424.
Komorowski, Michal, Finkenstädt, Bärbel and Rand, D. A. (David A.) (2010) Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression. Biophysical Journal, Vol.98 (No.12). pp. 2759-2769. doi:10.1016/j.bpj.2010.03.032 ISSN 0006-3495.
Spiller, David G., Wood, Christopher D., Rand, D. A. (David A.) and White, Michael R. H. (2010) Measurement of single-cell dynamics. Nature, Vol.465 (No.7299). pp. 736-745. ISSN 0028-0836 doi:10.1038/nature09232
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M., Sletta, Håvard, Alam, Mohammad T., Merlo, Maria E., Moore, Jonathan D. et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, Vol.11
(Article 10).
doi:10.1186/1471-2164-11-10
ISSN 1471-2164.
Nieselt, Kay, Battke, Florian, Herbig, Alexander, Bruheim, Per, Wentzel, Alexander, Jakobsen, Øyvind M, Sletta, Håvard, Alam, Mohammad Tauqee, Merlo, Maria E., Moore, Jonathan et al.
(2010)
The dynamic architecture of the metabolic switch in Streptomyces coelicolor.
BMC Genomics, 11
.
p. 10.
doi:DOI: 10.1186/1471-2164-11-10
ISSN 1471-2164.
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, F. (2010) Arc exchange systems and renormalization. Journal of Difference Equations and Applications, Vol.16 (No.4). pp. 347-371. doi:10.1080/10236190802422059 ISSN 1023-6198.
Pinto, A. A. and Rand, D. A. (David A.) (2010) Train tracks with C1+ self-renormalizable structures. Journal of Difference Equations and Applications, Vol.16 (No.8). pp. 945-962. doi:10.1080/10236190802629356 ISSN 1023-6198.
2009
Salazar, Jose Domingo, Saithong, Treenut, Brown, Paul E., Foreman, Julia, Locke, James C. W., Halliday, Karen J., Carré, Isabelle A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2009) Prediction of photoperiodic regulators from quantitative gene circuit models. Cell, Vol.139 (No.6). pp. 1170-1179. doi:10.1016/j.cell.2009.11.029 ISSN 1097-4172.
Komorowski, Michal, Finkenstädt, Bärbel, Harper, Claire V. and Rand, D. A. (David A.) (2009) Bayesian inference of biochemical kinetic parameters using the linear noise approximation. BMC Bioinformatics, Vol.10 (No.343). doi:10.1186/1471-2105-10-343 ISSN 1471-2105.
Smith, Benjamin, Hill, Claire, Godfrey, Emma L., Rand, D. A., Berg, Hugo van den, Thornton, Steven, Hodgkin, Matthew N., Davey, John and Ladds, Graham (2009) Dual positive and negative regulation of GPCR signaling by GTP hydrolysis. Cellular Signalling, Vol.21 (No.7). pp. 1151-1160. doi:10.1016/j.cellsig.2009.03.004 ISSN 0898-6568.
Ashall, Louise, Horton, Caroline A., Nelson, David E., Paszek, Pawel, Harper, Claire V., Sillitoe, Kate, Ryan, Sheila, Spiller, David G., Unitt, John F., Broomhead, D. S. (David S.), Kell, Douglas B., Rand, D. A. (David A.), See, Violaine and White, Michael R. H. (2009) Pulsatile stimulation determines timing and specificity of NF-kappa B-dependent transcription. Science, Vol.324 (No.5924). pp. 242-246. doi:10.1126/science.1164860 ISSN 0036-8075.
2008
Finkenstädt, Bärbel, Heron, Elizabeth A., Komorowski, Michal, Edwards, Kieron, Tang, Sanyi, Harper, Claire V., Davis, Julian R. E., White, Michael R. H., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations. Bioinformatics, Vol.24 (No.24). pp. 2901-2907. doi:10.1093/bioinformatics/btn562 ISSN 1367-4803.
Rand, D. A. (David A.) (2008) Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law. Journal of The Royal Society Interface, Vol.5 (Suppl.1). S59-S69. doi:10.1098/rsif.2008.0084.focus ISSN 1742-5689.
White, M., Horton, C., Nelson, D., Paszek, P., Ashall, L., Sillitoe, K., See, V., Spiller, D., Kell, D., Broomhead, D., Rand, D. A. (David A.) and White, M. R. H. (2008) Spatial and temporal information encoding by the NF-kappa B system. In: Annual Meeting of the Society-for-Experimental-Biology, Marseille, France, Jul 06-10, 2008. Published in: Comparative Biochemistry and Physiology. Part A: Molecular & Integrative Physiology, Vol.150 (No.3 Suppl. S). S47-S47. doi:10.1016/j.cbpa.2008.04.028 ISSN 1095-6433.
Akman, Ozgur E., Locke, James C. W., Tang, Sanyi, Carré, Isabelle A., Millar, A. J. (Andrew J.) and Rand, D. A. (David A.) (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology, Volume 4 . Article No. 164. doi:10.1038/msb.2008.5 ISSN 1744-4292.
Pinto, Alberto A., Rand, D. A. (David A.) and Ferreira, Flávio (2008) Fine structures of hyperbolic diffeomorphisms. Springer monographs in mathematics . Berlin: Springer. ISBN 9783540875246
Ferreira, Flávio, Pinto, Alberto A. and Rand, D. A. (David A.) (2008) Hausdorff dimension versus smoothness. In: Staicu, Vasile, (ed.) Differential Equations, Chaos and Variational Problems. Progress in nonlinear differential equations and their applications, Volume 75 . Basel: Birkhäuser, pp. 195-209. ISBN 9783764384814
Salazar, J. D., Foreman, J., Carré, I. A., Rand, D. A. (David A.) and Millar, A. J. (Andrew J.) (2008) Mathematical model of the epigenetic control of vernalisation in Arabidopsis thaliana. Acta Horticulturae (No.803). pp. 187-192. ISSN 0567-7572.
2007
Pinto, A. A., Rand, D. A. (David A.) and Feffeira, F. (2007) Cantor exchange systems and renormalization. Journal of Differential Equations, Vol.243 (No.2). pp. 593-616. doi:10.1016/j.jde.2007.09.014 ISSN 0022-0396.
Pinto, A. A., Rand, D. A. (David A.) and Ferreira, E. (2007) Hausdorff dimension bounds for smoothness of holonomies for codimension 1 hyperbolic dynamics. Journal of Differential Equations, Vol.243 (No.2). pp. 168-178. doi:10.1016/j.jde.2007.02.013 ISSN 0022-0396.
Berg, Hugo van den and Rand, D. A. (2007) Quantitative theories of T-cell responsiveness. Immunological Reviews, Vol.216 (No.1). pp. 81-92. ISSN 0105-2896 doi:10.1111/j.1600-065X.2006.00491.x
Heron, Elizabeth A., Finkenstädt, Bärbel and Rand, D. A. (David A.) (2007) Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study. Bioinformatics, Vol.23 (No.19). pp. 2596-2603. doi:10.1093/bioinformatics/btm367 ISSN 1367-4803.
2006
Millar, A. J. (Andrew J.), Brown, P., Edwards, K., Hall, A., Locke, J., Rand, D. A. (David A.), Anderson, P. and Smith, J. (2006) Biological clocks in theory and experiments. In: UNSPECIFIED. Published in: COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 143 (4 Suppl. S). S140-S140. ISSN 1095-6433.
Millar, A. J. (Andrew J.), Brown, P., Saithong, T., Salazar, D., Locke, J., Carre, I. and Rand, D. A. (David A.) (2006) Mechanistic modelling of flowering regulators based on molecular data. In: UNSPECIFIED. Published in: COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 143 (4 Suppl. S). S164-S164. ISSN 1095-6433.
2005
Pinto, A. A. and Rand, D. A. (David A.) (2005) Rigidity of hyperbolic sets on surfaces. Journal of the London Mathematical Society, Vol.71 (No.2). pp. 481-502. doi:10.1112/S0024610704006052 ISSN 0024-6107.
2002
Pinto, A. A. and Rand, D. A. (David A.) (2002) Teichmüller spaces and HR structures for hyperbolic surface dynamics. Ergodic Theory and Dynamical Systems, Vol.22 (No.6). pp. 1905-1931. doi:10.1017/S0143385702000792 ISSN 0143-3857.
Pinto, A. A. and Rand, D. A. (David A.) (2002) Smoothness of holonomies for codimension 1 hyperbolic dynamics. Bulletin of the London Mathematical Society, Vol.34 (No.3). pp. 341-352. doi:10.1112/S0024609301008670 ISSN 0024-6093.
2001
Pinto, A. A. and Rand, D. A. (David A.) (2001) Existence uniqueness and ratio decomposition for Gibbs states via duality. Ergodic Theory and Dynamical Systems, Vol.21 (No.2). pp. 533-543. doi:10.1017/S0143385701001262 ISSN 0143-3857.
1988
Rand, D. A. (David A.) (1988) Global phase space universality, smooth conjugacies and renormalisation: I. The C1+alpha case. NONLINEARITY, 1 (1). pp. 181-202. doi:10.1088/0951-7715/1/1/007 ISSN 0951-7715.
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