2023

Vu, Quoc Dang, Rajpoot, Kashif, Raza, Shan E. Ahmed and Rajpoot, Nasir M. (Nasir Mahmood) (2023) Handcrafted Histological Transformer (H2T) : unsupervised representation of whole slide images. Medical Image Analysis, 85 . p. 102743. 102743. doi:10.1016/j.media.2023.102743 ISSN 1361-8415.

Awan, Ruqayya, Raza, Shan-e-Ahmed, Lotz, Johannes, Weiss, Nick and Rajpoot, Nasir M. (2023) Deep feature based cross-slide registration. Computerized Medical Imaging and Graphics, 104 . 102162. doi:10.1016/j.compmedimag.2022.102162 ISSN 0895-6111.

Graham, Simon, Vu, Quoc Dang, Jahanifar, Mostafa, Raza, Shan E. Ahmed, Minhas, Fayyaz ul Amir Afsar, Snead, David and Rajpoot, Nasir M. (Nasir Mahmood) (2023) One model is all you need : multi-task learning enables simultaneous histology image segmentation and classification. Medical Image Analysis, 83 . 102685. doi:10.1016/j.media.2022.102685 ISSN 13618415.

Albusayli, Rawan, Graham, J. Dinny, Pathmanathan, Nirmala, Shaban, Muhammad, Raza, Shan E. Ahmed, Minhas, Fayyaz ul Amir Afsar, Armes, Jane E. and Rajpoot, Nasir M. (Nasir Mahmood) (2023) Artificial intelligence‐based digital scores of stromal tumour‐infiltrating lymphocytes and tumour‐associated stroma predict disease‐specific survival in triple‐negative breast cancer. The Journal of Pathology . doi:10.1002/path.6061 ISSN 0022-3417. (In Press)

2022

Pocock, Johnathan, Graham, Simon, Vu, Quoc Dang, Jahanifar, Mostafa, Deshpande, Srijay, Hadjigeorghiou, Giorgos, Shephard, Adam, Bashir, Raja Muhammad Saad, Bilal, Mohsin, Lu, Wenqi, Epstein, D. B. A., Minhas, Fayyaz ul Amir Afsar, Rajpoot, Nasir M. and Raza, Shan-e-Ahmed (2022) TIAToolbox as an end-to-end library for advanced tissue image analytics. Communications Medicine, 2 (1). 120. doi:10.1038/s43856-022-00186-5 ISSN 2730-664X.

Gunesli, Gozde, Jewsbury, Robert, Raza, Shan E. Ahmed and Rajpoot, Nasir M. (Nasir Mahmood) (2022) Morph-Net : end-to-end prediction of nuclear morphological features from histology images. In: Huo, Y. and Millis, B. A. and Zhou, Y. and Wang, X. and Harrison, A. P. and Xu, Z., (eds.) Medical Optical Imaging and Virtual Microscopy Image Analysis. Lecture Notes in Computer Science, 13578 . Cham: Springer, pp. 136-144. ISBN 9783031169601

Mahmood, Hanya, Bradburn, Mike, Rajpoot, Nasir M. (Nasir Mahmood), Islam, Nadim Mohammed, Kujan, Omar and Khurram, Syed Ali (2022) Prediction of malignant transformation and recurrence of oral epithelial dysplasia using architectural and cytological feature specific prognostic models. Modern Pathology, 35 . pp. 1151-1159. doi:10.1038/s41379-022-01067-x ISSN 0893-3952.

Lu, Wenqi, Toss, Michael, Dawood, Muhammad, Rakha, Emad, Rajpoot, Nasir and Minhas, Fayyaz (2022) SlideGraph+ : whole slide image level graphs to predict HER2 status in breast cancer. Medical Image Analysis, 80 . 102486. doi:10.1016/j.media.2022.102486 ISSN 1361-8415.

Azarmehr, N., Shephard, Adam, Mahmood, H., Rajpoot, Nasir M. (Nasir Mahmood) and Khurram, S. A. (2022) A neural architecture search based framework for segmentation of epithelium, nuclei and oral epithelial dysplasia grading. In: Yang, G. and Aviles-Rivero, A. and Roberts, M. and Schönlieb, C. B., (eds.) Medical Image Understanding and Analysis. MIUA 2022. Lecture Notes in Computer Science, 13413 . Cham: Springer New York LLC, pp. 357-370. ISBN 9783031120527

Bashir, Raja Muhammad Saad, Shaban, Muhammad, Raza, Shan E. Ahmed, Khurram, Syed Ali and Rajpoot, Nasir M. (Nasir Mahmood) (2022) A novel framework for coarse-grained semantic segmentation of whole-slide images. In: Yang, G. and Aviles-Rivero, A. and Roberts, M. and Schönlieb, C. B., (eds.) Medical Image Understanding and Analysis.MIUA 2022. Lecture Notes in Computer Science , 13413 . Cham: Springer International Publishing, pp. 425-439. ISBN 9783031120527

Hassan, Taimur, Javed, Sajid, Mahmood, Arif, Qaiser, Talha, Werghi, Naoufel and Rajpoot, Nasir M. (2022) Nucleus classification in histology images using message passing network. Medical Image Analysis, 79 . 102480. doi:10.1016/j.media.2022.102480 ISSN 1361-8415.

Foote, Alex, Asif, Amina, Rajpoot, Nasir and Minhas, Fayyaz (2022) REET : robustness evaluation and enhancement toolbox for computational pathology. Bioinformatics, 38 (12). pp. 3312-3314. doi:10.1093/bioinformatics/btac315 ISSN 1367-4803.

Lu, Wenqi, Miligy, Islam M., Minhas, Fayyaz, Park, Young Saeng, Snead, David R. J., Rakha, Emad A., Verrill, Clare and Rajpoot, Nasir (2022) Lessons from a breast cell annotation competition series for school pupils. Scientific Reports, 12 (1). 7792. doi:10.1038/s41598-022-11782-9 ISSN 2045-2322.

Deshpande, Srijay, Minhas, Fayyaz ul Amir Afsar, Graham, Simon and Rajpoot, Nasir M. (Nasir Mahmood) (2022) SAFRON : Stitching Across the Frontier Network for generating colorectal cancer histology images. Medical Image Analysis, 77 . 102337. doi:10.1016/j.media.2021.102337 ISSN 1361-8415.

Sorell, Tom, Rajpoot, Nasir M. (Nasir Mahmood) and Verrill, Clare (2022) Ethical issues in computational pathology. Journal of Medical Ethics, 48 (4). pp. 278-284. doi:10.1136/medethics-2020-107024 ISSN 0306-6800.

Jahanifar, Mostafa, Shephard, Adam, Zamanitajeddin, Neda, Bashir, R. M. Saad, Bilal, Mohsin, Khurram, Syed Ali, Minhas, Fayyaz and Rajpoot, Nasir (2022) Stain-robust mitotic figure detection for the mitosis domain generalization challenge. In: International Conference on Medical Image Computing and Computer-Assisted Intervention, Strasbourg, France, 27 Sep-01 Oct 2021. Published in: Biomedical Image Registration, Domain Generalisation and Out-of-Distribution Analysis, 13166 (1). pp. 48-52. ISBN 9783030972806. doi:10.1007/978-3-030-97281-3_6 ISSN 0302-9743.

Shaban, Muhammad, Raza, Shan E. Ahmed, Hassan, Mariam, Jamshed, Arif, Mushtaq, Sajid, Loya, Asif, Batis, Nikolaos, Brooks, Jill, Nankivell, Paul, Sharma, Neil, Robinson, Max, Mehanna, Hisham, Khurram, Syed Ali and Rajpoot, Nasir M. (Nasir Mahmood) (2022) A digital score of tumour‐associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma. The Journal of Pathology, 256 (2). pp. 174-185. doi:10.1002/path.5819 ISSN 0022-3417.

Thampi, Vipin, Hariprasad, Roopa, John, Amrita, Nethan, Suzanne, Dhanasekaran, Kavitha, Kumar, Vipin, Birur, Praveen, Thakur, J. S., Lilford, Richard, Rajpoot, Nasir M. and Gill, Paramjit (2022) Feasibility of training community health workers in the detection of oral cancer. JAMA Network Open, 5 (1). e2144022. doi:10.1001/jamanetworkopen.2021.44022 ISSN 2574-3805.

Minhas, Fayyaz, Toss, Michael S., Wahab, Noor ul, Rakha, Emad and Rajpoot, Nasir M. (2022) L1-regularized neural ranking for risk stratification and its application to prediction of time to distant metastasis in luminal node negative chemotherapy naïve breast cancer patients. In: Joint European Conference on Machine Learning and Knowledge Discovery in Databases, Online, 13-17 Sep 2021. Published in: Proceedings of the ECML PKDD 2021: Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 1525 pp. 390-400. ISBN 9783030937324. doi:10.1007/978-3-030-93733-1_27 ISSN 1865-0929.

Mariam, Komal, Afzal, Osama Mohammed, Hussain, Wajahat, Javed, Muhammad Umar, Kiyani, Amber, Rajpoot, Nasir M. (Nasir Mahmood), Khurram, Syed Ali and Khan, Hassan Aqeel (2022) On smart gaze based annotation of histopathology images for training of deep convolutional neural networks. IEEE Journal of Biomedical and Health Informatics . doi:10.1109/JBHI.2022.3148944 ISSN 2168-2194.

2021

Bilal, Mohsin, Raza, Shan-e-Ahmed, Azam, Ayesha, Graham, Simon, Ilyas, Mohammad, Cree, Ian A., Snead, David, Minhas, Fayyaz ul Amir Afsar and Rajpoot, Nasir M. (2021) Development and validation of a weakly supervised deep learning framework to predict the status of molecular pathways and key mutations in colorectal cancer from routine histology images : a retrospective study. The Lancet Digital Health, 3 (12). e763-e772. doi:10.1016/S2589-7500(21)00180-1 ISSN 2589-7500.

Koohbanani, Navid Alemi, Unnikrishnan, Balagopal, Khurram, Syed Ali, Krishnaswamy, Pavitra and Rajpoot, Nasir M. (Nasir Mahmood) (2021) Self-path : self-supervision for classification of pathology images with limited annotations. IEEE Transactions on Medical Imaging, 40 (10). pp. 2845-2856. doi:10.1109/TMI.2021.3056023 ISSN 0278-0062.

Awan, Ruqayya, Benes, Ksenija, Azam, Ayesha, Song, Tzu‐Hsi, Shaban, Muhammad, Verrill, Clare, Tsang, Yee Wah, Snead, David, Minhas, Fayyaz ul Amir Afsar and Rajpoot, Nasir M. (2021) Deep learning based digital cell profiles for risk stratification of urine cytology images. Cytometry Part A, 99 (7). pp. 732-742. doi:10.1002/cyto.a.24313 ISSN 1552-4922.

Azam, Ayesha, Miligy, Islam, Kimani, Peter K., Maqbool, Heeba, Hewitt, Katherine, Rajpoot, Nasir M. and Snead, David (2021) Diagnostic concordance and discordance in digital pathology : a systematic review and meta-analysis. Journal of Clinical Pathology, 74 . pp. 448-455. doi:10.1136/jclinpath-2020-206764 ISSN 0021-9746.

Khurram, I., Fraz, Muhammad Moazam, Shahzad, M. and Rajpoot, Nasir M. (Nasir Mahmood) (2021) Dense-CaptionNet : a sentence generation architecture for fine-grained description of image semantics. Cognitive Computation, 13 . pp. 595-611. doi:10.1007/s12559-019-09697-1 ISSN 1866-9956.

Mahmood, Hanya, Shaban, Muhammad, Rajpoot, Nasir M. (Nasir Mahmood) and Khurram, Syed A (2021) Artificial Intelligence-based methods in head and neck cancer diagnosis : an overview. British Journal of Cancer, 124 . pp. 1934-1940. doi:10.1038/s41416-021-01386-x ISSN 0007-0920.

Zamanitajeddin, Neda, Jahanifar, Mostafa and Rajpoot, Nasir M. (Nasir Mahmood) (2021) Cells are actors : social network analysis with classical ML for SOTA histology image classification. In: de Bruijne, Marleen and Cattin, Philippe C. and Cotin, Stéphane and Padoy, Nicolas and Speidel, Stefanie and Zheng, Yefeng and Essert, Caroline, (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2021. Lecture Notes in Computer Science, 12908 . Cham: Springer International Publishing, pp. 288-298. ISBN 9783030872366

Jahanifar, Mostafa, Tajeddin, Neda Zamani, Koohbanani, Navid Alemi and Rajpoot, Nasir M. (Nasir Mahmood) (2021) Robust interactive semantic segmentation of pathology images with minimal user input. In: 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW), Montreal, BC, Canada, 11-17 Oct 2021. Published in: 2021 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW) pp. 674-683. doi:10.1109/ICCVW54120.2021.00081

2020

Graham, Simon, Epstein, D. B. A. and Rajpoot, Nasir M. (Nasir Mahmood) (2020) Dense steerable filter CNNs for exploiting rotational symmetry in histology images. IEEE Transactions on Medical Imaging, 39 (12). pp. 4124-4136. doi:10.1109/TMI.2020.3013246 ISSN 0278-0062.

Mahmood, H., Shaban, Muhammad, Indave, B.I., Santos-Silva, A.R., Rajpoot, Nasir M. (Nasir Mahmood) and Khurram, S.A. (2020) Use of artificial intelligence in diagnosis of head and neck precancerous and cancerous lesions : a systematic review. Oral Oncology, 110 . 104885. doi:10.1016/j.oraloncology.2020.104885 ISSN 1368-8375.

Koohbanani, Navid Alemi, Jahanifar, Mostafa, Tajadin, Neda Zamani and Rajpoot, Nasir M. (Nasir Mahmood) (2020) NuClick : a deep learning framework for interactive segmentation of microscopic images. Medical Image Analysis, 65 . 101771. doi:10.1016/j.media.2020.101771 ISSN 1361-8415.

Rakha, Emad A., Alsaleem, Mansour, ElSharawy, Khloud A., Toss, Michael S., Raafat, Sara, Mihai, Raluca, Minhas, Fayyaz ul Amir Afsar, Green, Andrew R., Rajpoot, Nasir M. (Nasir Mahmood), Dalton, Les W. and Mongan, Nigel P. (2020) Visual histological assessment of morphological features reflects the underlying molecular profile in invasive breast cancer : a morpho‐molecular study. Histopathology, 77 (4). pp. 631-645. doi:10.1111/his.14199 ISSN 0309-0167.

Javed, Sajid, Mahmood, Arif, Fraz, Muhammad Moazam, Koohbanani, Navid Alemi, Benes, Ksenija, Tsang, Yee-Wah, Hewitt, Katherine J., Epstein, D. B. A., Snead, David and Rajpoot, Nasir M. (Nasir Mahmood) (2020) Cellular community detection for tissue phenotyping in colorectal cancer histology images. Medical Image Analysis, 63 . 101696. doi:10.1016/j.media.2020.101696 ISSN 13618415.

Shaban, Muhammad, Awan, Ruqayya, Fraz, Muhammad Moazam, Azam, Ayesha, Tsang, Yee-Wah, Snead, David and Rajpoot, Nasir M. (Nasir Mahmood) (2020) Context-aware convolutional neural network for grading of colorectal cancer histology images. IEEE Transactions on Medical Imaging, 39 (7). pp. 2395-2405. doi:10.1109/TMI.2020.2971006 ISSN 0278-0062.

Fraz, Muhammad Moazam, Khurram, S. A., Graham, Simon, Shaban, Muhammad, Hassan, M., Loya, A. and Rajpoot, Nasir M. (Nasir Mahmood) (2020) FABnet : feature attention-based network for simultaneous segmentation of microvessels and nerves in routine histology images of oral cancer. Neural Computing and Applications, 32 . pp. 9915-9928. doi:10.1007/s00521-019-04516-y ISSN 0941-0643.

2019

Graham, Simon, Vu, Quoc Dang, Raza, Shan E. Ahmed, Azam, Ayesha, Tsang, Yee Wah, Kwak, Jin Tae and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Hover-Net : simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Analysis, 58 . 101563. doi:10.1016/j.media.2019.101563 ISSN 1361-8415.

Qaiser, Talha and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Learning where to see : a novel attention model for automated immunohistochemical scoring. IEEE Transactions on Medical Imaging, 38 (11). pp. 2620-2631. doi:10.1109/TMI.2019.2907049 ISSN 0278-0062.

Shaban, Muhammad, Mahmood, Arif, Al-Maadeed, Somaya Ali and Rajpoot, Nasir M. (2019) An information fusion framework for person localization via body pose in spectator crowds. Information Fusion, 51 . pp. 178-188. doi:10.1016/j.inffus.2018.11.011 ISSN 1566-2535.

CMPath AI in Histopathology Working Group (Including: Colling, Richard, Pitman, Helen, Oien, Karin, Rajpoot, Nasir M., Macklin, Philip, Snead, David, Sackville, Tony and Verrill, Clare). (2019) Artificial intelligence in digital pathology : a roadmap to routine use in clinical practice. Journal of Pathology, 249 (2). pp. 143-150. doi:10.1002/path.5310 ISSN 0022-3417.

Shaban, Muhammad, Khurram, Syed Ali, Fraz, Muhammad Moazam, Alsubaie, Najah, Masood, Iqra, Mushtaq, Sajid, Hassan, Mariam, Loya, Asif and Rajpoot, Nasir M. (Nasir Mahmood) (2019) A novel digital score for abundance of tumour infiltrating lymphocytes predicts disease free survival in oral squamous cell carcinoma. Scientific Reports, 9 . 13341. doi:10.1038/s41598-019-49710-z ISSN 2045-2322.

Lin, Huangjing , Chen, Hao , Graham, Simon, Dou, Qi , Rajpoot, Nasir M. (Nasir Mahmood) and Heng, Pheng-Ann (2019) Fast ScanNet : fast and dense analysis of multi-gigapixel whole-slide images for cancer metastasis detection. IEEE Transactions on Medical Imaging, 38 (8). pp. 1948-1958. doi:10.1109/TMI.2019.2891305 ISSN 0278-0062.

Qaiser, Talha, Tsang, Yee-Wah, Taniyama, Daiki, Sakamoto, Naoya, Nakane, Kazuaki, Epstein, D. B. A. and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Fast and accurate tumor segmentation of histology images using persistent homology and deep convolutional features. Medical Image Analysis, 55 . pp. 1-14. doi:10.1016/j.media.2019.03.014 ISSN 1361-8415.

Song, Tzu-Hsi, Sanchez Silva, Victor, ElDaly, Hesham and Rajpoot, Nasir M. (2019) Simultaneous cell detection and classification in bone marrow histology images. IEEE Journal of Biomedical and Health Informatics, 23 (4). 1469 -1476. doi:10.1109/JBHI.2018.2878945 ISSN 2168-2194.

Shaban, Muhammad, Mahmood, Arif, Al-maadeed, Somaya and Rajpoot, Nasir M. (Nasir Mahmood) (2019) Multi-person head segmentation in low resolution crowd scenes using convolutional encoder-decoder framework. In: Chen, L. and Ben Amor, B. and Ghorbel, F., (eds.) Representations, Analysis and Recognition of Shape and Motion from Imaging Data. Springer, pp. 82-92. ISBN 9783030198152

(2019) Predicting breast tumor proliferation from whole-slide images : the TUPAC16 challenge. Medical Image Analysis, 54 . pp. 111-121. doi:10.1016/j.media.2019.02.012 ISSN 1361-8415.

Vu, Quoc Dang, Graham, Simon, Kurc, Tahsin, To, Minh Nguyen Nhat, Shaban, Muhammad, Qaiser, Talha, Koohbanani, Navid Alemi, Khurram, Syed Ali, Kalpathy-Cramer, Jayashree, Zhao, Tianhao, Gupta, Rajarsi, Kwak, Jin Tae, Rajpoot, Nasir M. (Nasir Mahmood), Saltz, Joel and Farahani, Keyvan (2019) Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Frontiers in Bioengineering and Biotechnology, 7 . doi:10.3389/fbioe.2019.00053 ISSN 2296-4185.

Shapcott, Mary, Hewitt, Katherine J. and Rajpoot, Nasir M. (2019) Deep learning with sampling in colon cancer histology. Frontiers in Bioengineering and Biotechnology , 7 (52). doi:10.3389/fbioe.2019.00052 ISSN 2296-4185.

(2019) The use of digital pathology and image analysis in clinical trials. The Journal of Pathology, 5 (2). pp. 81-90. doi:10.1002/cjp2.127 ISSN 0022-3417.

Graham, Simon, Chen, Hao, Gamper, Jevgenij, Dou, Qi, Heng, Pheng-Ann, Snead, David, Tsang, Yee Wah and Rajpoot, Nasir M. (Nasir Mahmood) (2019) MILD-Net : Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Analysis, 52 . pp. 199-211. doi:10.1016/j.media.2018.12.001 ISSN 1361-8415.

Raza, Shan-e-Ahmed, Cheung, Linda, Shaban, Muhammad, Graham, Simon, Epstein, D. B. A., Pelengaris, Stella, Khan, Michael and Rajpoot, Nasir M. (2019) Micro-Net : a unified model for segmentation of various objects in microscopy images. Medical Image Analysis, 52 . pp. 160-173. doi:10.1016/j.media.2018.12.003 ISSN 1361-8415.

2018

(2018) Why rankings of biomedical image analysis competitions should be interpreted with care. Nature Communications, 9 (1). 5217. doi:10.1038/s41467-018-07619-7 ISSN 2041-1723.

Sirinukunwattana, Korsuk, Snead, David, Epstein, D. B. A., Aftab, Zia, Mujeeb, Imaad, Tsang, Yee Wah, Cree, Ian A. and Rajpoot, Nasir M. (2018) Novel digital signatures of tissue phenotypes for predicting distant metastasis in colorectal cancer. Scientific Reports, 8 (1). 13692 . doi:10.1038/s41598-018-31799-3 ISSN 2045-2322.

Graham, Simon, Chen, Hao, Dou, Qi, Heng, Pheng-Ann and Rajpoot, Nasir M. (Nasir Mahmood) (2018) MILD-Net : minimal information loss dilated network for gland instance segmentation in colon histology images. In: Medical Imaging with Deep Learning (MIDL), Amsterdam, 4-6 Jul 2018 (Unpublished)

Tomaszewski, John E., Gurcan, Metin N., Rajpoot, Nasir M. (Nasir Mahmood), Qaiser, Talha, Shaban, Muhammad, Graham, Simon and Khurram, Syed Ali (2018) Classification of lung cancer histology images using patch-level summary statistics. In: SPIE Medical Imaging, Houston, Texas, United States, 2/10/2018 - 2/15/2018. Published in: Proceedings Volume 10581, Medical Imaging 2018: Digital Pathology, 10581 doi:10.1117/12.2293855

(2018) Her2 Challenge Contest : a detailed assessment of automated Her2 scoring algorithms in whole slide images of breast cancer tissues. Histopathology, 72 (2). pp. 227-238. doi:10.1111/his.13333 ISSN 0309-0167.

Idrees, Haroon, Tayyab, Muhmmad, Athrey, Kishan, Zhang, Dong, Al-Maadeed, Somaya, Rajpoot, Nasir and Shah, Mubarak (2018) Composition loss for counting, density map estimation and localization in dense crowds. In: European Conference on Computer Vision , Munich, Germany, 8-14 Sept 2018. Published in: Computer Vision – ECCV 2018 , 11206 pp. 544-559. doi:10.1007/978-3-030-01216-8_33 ISSN 0302-9743.

2017

CAMELYON16 Consortium (Including:

). (2017) Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer. JAMA: The Journal of the American Medical Association, 318 (22). 2199. doi:10.1001/jama.2017.14585 ISSN 0098-7484.

Awan, Ruqayya, Sirinukunwattana, Korsuk, Epstein, D. B. A., Jefferyes, Samuel, D. R., Qidwai, Uvais, Aftab, Zia, Mujeeb, Imaad, Snead, David R. J. and Rajpoot, Nasir M. (2017) Glandular morphometrics for objective grading of colorectal adenocarcinoma histology images. Scientific Reports, 7 . 16852. doi:10.1038/s41598-017-16516-w ISSN 2045-2322.

Song, Tzu-Hsi, Sanchez Silva, Victor, Eldaly, Hesham and Rajpoot, Nasir M. (2017) Dual-channel active contour model for megakaryocytic cell segmentation in bone marrow trephine histology images. IEEE Transactions on Biomedical Engineering, 64 (12). pp. 2913-2923. doi:10.1109/TBME.2017.2690863 ISSN 0018-9294.

Rezk, Eman, Awan, Zainab, Islam, Fahad, Jaoua, Ali, Al Maadeed, Somaya, Zhang, Nan, Das, Gautam and Rajpoot, Nasir M. (Nasir Mahmood) (2017) Conceptual data sampling for breast cancer histology image classification. Computers in Biology and Medicine, 89 . pp. 59-67. doi:10.1016/j.compbiomed.2017.07.018 ISSN 0010-4825.

Xue, Mingzhan, Shafie, Alaa, Qaiser, Talha, Rajpoot, Nasir M., Kaltsas, Gregory, Gopalakrishnan, Kishore, Fisk, Adrian, Dimitriadis, Georgios K., Grammatopoulos, Dimitris, Rabbani, Naila, Thornalley, Paul J., Weickert, Martin O. and James, Sean G. (2017) Glyoxalase 1 copy number variation in patients with well differentiated gastroentero-pancreatic neuroendocrine tumours (GEP-NET). Oncotarget, 8 . pp. 76961-76973. doi:10.18632/oncotarget.20290 ISSN 1949-2553.

Trahearn, Nicholas, Epstein, D. B. A., Cree, Ian A., Snead, David and Rajpoot, Nasir M. (2017) Hyper-stain inspector : a framework for robust registration and localised co-expression analysis of multiple whole-slide images of serial histology sections. Scientific Reports, 7 . 5641. ISSN 2045-2322.

Trahearn, Nicholas, Tsang, Yee-Wah, Cree, Ian A., Snead, David, Epstein, D. B. A. and Rajpoot, Nasir M. (2017) Simultaneous automatic scoring and co-registration of hormone receptors in tumour areas in whole slide images of breast cancer tissue slides. Cytometry Part A, 91 (6). pp. 585-594. doi:10.1002/cyto.a.23035 ISSN 1552-4922.

Qaiser, Talha, Tsang, Yee-Wah, Epstein, D. B. A. and Rajpoot, Nasir M. (2017) Tumor segmentation in whole slide images using persistent homology and deep convolutional features. In: Medical Image Understanding and Analysis (MIUA 2017), Edinburgh, 11-12 July 2017. Published in: Communications in Computer and Information Science pp. 320-329. ISSN 1865-0929.

Mahmood, Arif, Small, Michael, Al-Maadeed, Somaya and Rajpoot, Nasir M. (2017) Using geodesic space density gradients for network community detection. IEEE Transactions on Knowledge and Data Engineering, 294 (4). pp. 921-935. doi:10.1109/TKDE.2016.2632716 ISSN 1041-4347.

Li, Guannan, Raza, Shan-e-Ahmed and Rajpoot, Nasir M. (2017) Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images. Medical Image Analysis, 37 . pp. 91-100. doi:10.1016/j.media.2017.01.006 ISSN 1361-8415.

Alsubaie, Najah, Trahearn, Nicholas, Raza, Shan-e-Ahmed, Snead, David and Rajpoot, Nasir M. (2017) Stain deconvolution using statistical analysis of multi-resolution stain colour representation. PLoS One, 12 (1). e0169875. doi:10.1371/journal.pone.0169875 ISSN 1932-6203.

Rajpoot, Nasir M. and Sirinukunwattana, Korsuk (2017) Gland segmentation in colon histology images : the GlaS challenge contest. Medical Image Analysis, 35 . pp. 489-502. doi:10.1016/j.media.2016.08.008 ISSN 1361-8415.

2016

Qaiser, Talha, Sirinukunwattana, Korsuk, Nakane, Kazuaki, Tsang, Yee-Wah, Epstein, D. B. A. and Rajpoot, Nasir M. (2016) Persistent homology for fast tumor segmentation in whole slide histology images. In: Medical Image Understanding and Analysis (MIUA 2016), Loughborough, UK, 6-8 July 2016. Published in: Procedia Computer Science, 90 pp. 119-124. ISSN 1877-0509.

Snead, David R. J., Tsang, Yee-Wah, Meskiri, Aisha, Kimani, Peter K., Crossman, Richard, Rajpoot, Nasir M., Blessing, Elaine, Chen, Klaus, Gopalakrishnan, Kishore, Matthews, Paul, Momtahan, Navid, Read-Jones, Sarah, Sah, Shatrughan, Simmons, Emma, Sinha, Bidisa, Suortamo, Sari, Yeo, Yen, El Daly, Hesham and Cree, Ian A. (2016) Validation of digital pathology imaging for primary histopathological diagnosis. Histopathology, 68 (7). pp. 1063-1072. doi:10.1111/his.12879 ISSN 0309-0167.

Sirinukunwattana, Korsuk, Raza, Shan-e-Ahmed, Tsang, Yee-Wah, Snead, David, Cree, Ian A. and Rajpoot, Nasir M. (2016) Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Transactions on Medical Imaging, 35 (5). 1196 -1206. doi:10.1109/TMI.2016.2525803 ISSN 0278-0062.

Raza, Shan-e-Ahmed, Langenkämper, Daniel, Sirinukunwattana, Korsuk, Epstein, D. B. A., Nattkemper, Tim W. and Rajpoot, Nasir M. (2016) Robust normalization protocols for multiplexed fluorescence bioimage analysis. BioData Mining, 9 (11). pp. 1-13. doi:10.1186/s13040-016-0088-2 ISSN 1756-0381 .

2015

Sirinukunwattana, Korsuk, Snead, David R. J. and Rajpoot, Nasir M. (2015) A stochastic polygons model for glandular structures in colon histology images. IEEE Transactions on Medical Imaging, 34 (11). 2366 -2378. doi:10.1109/TMI.2015.2433900 ISSN 0278-0062.

Khan, Adnan M., Sirinukunwattana, Korsuk and Rajpoot, Nasir M. (2015) A global covariance descriptor for nuclear atypia scoring in breast histopathology images. IEEE Journal of Biomedical and Health Informatics, 19 (5). 1637 -1647. doi:10.1109/JBHI.2015.2447008 ISSN 2168-2194.

Raza, Shan-e-Ahmed, Sanchez Silva, Victor, Prince, Gillian, Clarkson, John P. and Rajpoot, Nasir M. (2015) Registration of thermal and visible light images of diseased plants using silhouette extraction in the wavelet domain. Pattern Recognition, Volume 48 (Number 7). pp. 2119-2128. doi:10.1016/j.patcog.2015.01.027 ISSN 0031-3203.

Li, Guannan, Sanchez Silva, Victor, Quenby, Siobhan, Patel, Gauranga Jeram and Rajpoot, Nasir M. (2015) Localisation of luminal epithelium edge in digital histopathology images of IHC stained slides of endometrial biopsies. Computerized Medical Imaging and Graphics, 42 . pp. 56-63. doi:10.1016/j.compmedimag.2014.11.007 ISSN 0895-6111.

Raza, Shan-e-Ahmed, Prince, Gillian, Clarkson, John P. and Rajpoot, Nasir M. (2015) Automatic detection of diseased tomato plants using thermal and stereo visible light images. PLoS One, Volume 10 (Number 4). Article number e0123262. doi:10.1371/journal.pone.0123262 ISSN 1932-6203.

(2015) Assessment of algorithms for mitosis detection in breast cancer histopathology images. Medical Image Analysis, 20 (1). pp. 237-248. doi:10.1016/j.media.2014.11.010 ISSN 1361-8415.

2014

Khan, Adnan M., Raza, Shan-e-Ahmed, Khan, Michael and Rajpoot, Nasir M. (2014) Cell phenotyping in multi-tag fluorescent bioimages. Neurocomputing , Volume 134 . pp. 254-261. doi:10.1016/j.neucom.2013.08.043 ISSN 0925-2312.

Raza, Shan-e-Ahmed, Smith, Hazel K., Clarkson, Graham J. J., Taylor, Gail, Thompson, Andrew J., Clarkson, John P. and Rajpoot, Nasir M. (Nasir Mahmood) (2014) Automatic detection of regions in spinach canopies responding to soil moisture deficit using combined visible and thermal imagery. PLoS One, Volume 9 (Number 6). Article number e97612. doi:10.1371/journal.pone.0097612 ISSN 1932-6203.

Khan, Adnan M., Rajpoot, Nasir M. (Nasir Mahmood), Treanor, Darren and Magee, Derek (2014) A nonlinear mapping approach to stain normalization in digital histopathology images using image-specific color deconvolution. IEEE Transactions on Biomedical Engineering, Volume 61 (Number 6). pp. 1729-1738. doi:10.1109/TBME.2014.2303294 ISSN 0018-9294.

Kovacheva, Violeta N., Sirinukunwattana, Korsuk and Rajpoot, Nasir M. (2014) A bayesian framework for cell-level protein network analysis for multivariate proteomics image data. In: Medical Imaging 2014: Digital Pathology, San Diego, California, USA, February 15, 2014. Published in: SPIE Proceedings, 9041 doi:10.1117/12.2045028 ISSN 0277-786X.

Trahearn, Nicholas, Snead, David R. J., Epstein, D. B. A., Cree, Ian A. and Rajpoot, Nasir M. (Nasir Mahmood) (2014) A fast method for approximate registration of whole-slide images of serial sections using local curvature. In: Medical Imaging 2014: Digital Pathology, San Diego, California, USA, February 15, 2014. Published in: SPIE Proceedings, 9041 doi:10.1117/12.2043308 ISSN 0277-786X.

Kovacheva, Violeta N., Khan, Adnan M., Khan, Michael, Epstein, D. B. A. and Rajpoot, Nasir M. (Nasir Mahmood) (2014) DiSWOP : a novel measure for cell-level protein network analysis in localized proteomics image data. Bioinformatics, Volume 30 (Number 3). pp. 420-427. doi:10.1093/bioinformatics/btt676 ISSN 1367-4803.

Khan, Adnan M., Mohammed, Aisha F., Al-Hajri, Shama A., Shamari, Hajer M. Al, Qidwai, Uvais, Mujeeb, Imaad and Rajpoot, Nasir M. (Nasir Mahmood) (2014) A novel system for scoring of hormone receptors in breast cancer histopathology slides. In: 2014 Middle East Conference on Biomedical Engineering (MECBME), Dohar, Qatar, 17-20 Feb 2014. Published in: Proceedings of 2014 Middle East Conference on Biomedical Engineering (MECBME) pp. 155-158. doi:10.1109/MECBME.2014.6783229

2013

Sirinukunwattana, Korsuk, Savage, Richard S., Bari, Muhammad F., Snead, David R. J. and Rajpoot, Nasir M. (2013) Bayesian hierarchical clustering for studying cancer gene expression data with unknown statistics. PLoS One, 8 (10). e75748. doi:10.1371/journal.pone.0075748 ISSN 1932-6203.

Jefferyes, Samuel, D. R., Epstein, D. B. A., Straube, Anne and Rajpoot, Nasir M. (Nasir Mahmood) (2013) A novel framework for exploratory analysis of highly variable morphology of migrating epithelial cells. In: 2013 35TH Annual International Conference of The IEEE Engineering in Medicine and Biology Society (EMBC), Osaka, 3-7 July 2013 pp. 3463-3466. doi:10.1109/EMBC.2013.6610287

2012

Khan, Adnan M., El-Daly, H. and Rajpoot, Nasir M. (Nasir Mahmood) (2012) A Gamma-Gaussian mixture model for detection of mitotic cells in breast cancer histopathology images. In: 21st International Conference on Pattern Recognition (ICPR), Tsukuba, Japan, 11-15 November, 2012. Published in: Proceedings - International Conference on Pattern Recognition pp. 149-152. ISBN 9784990644109. ISSN 1051-4651.

Khan, Shahid, Reese, Thomas S., Rajpoot, Nasir M. (Nasir Mahmood) and Shabbir, Ayisha (2012) Spatiotemporal maps of CaMKII in dendritic spines. Journal of Computational Neuroscience, Volume 33 (Number 1). pp. 123-139. doi:10.1007/s10827-011-0377-1 ISSN 0929-5313.

Raza, Shan-e-Ahmed, Humayun, Ahmad, Abouna, Sylvie, Nattkemper, Tim W., Epstein, D. B. A., Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2012) RAMTaB : robust alignment of multi-tag bioimages. PLoS One, Vol.7 (No.2). e30894. doi:10.1371/journal.pone.0030894 ISSN 1932-6203.

Kuse, Manohar, Wang, Yi-Fang, Kalasannavar, V, Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2012) Local isotropic phase symmetry measure for detection of beta cells and lymphocytes. Journal of Pathology Informatics, Vol.2 (No.2). doi:10.4103/2153-3539.92028 ISSN 2229-5089.

McKenna, Stephen J., Magee, Derek and Rajpoot, Nasir M. (Nasir Mahmood) (2012) Special issue on microscopy image analysis for biomedical applications. Machine Vision and Applications, Volume 23 (Number 4). pp. 603-605. doi:10.1007/s00138-012-0436-2 ISSN 0932-8092.

Evans, Robert G., Naidu, Babu, Rajpoot, Nasir M. (Nasir Mahmood), Epstein, D. B. A. and Khan, Michael (2012) Toponome imaging system : multiplex biomarkers in oncology. Trends in Molecular Medicine, Vol.18 (No.12). pp. 723-731. doi:10.1016/j.molmed.2012.10.003 ISSN 1471-4914.

Rajpoot, Nasir M. (Nasir Mahmood) and Butt, Irfan T. (2012) A multiresolution framework for local similarity based image denoising. Pattern Recognition, Vol.45 (No.8). pp. 2938-2951. doi:10.1016/j.patcog.2012.01.023 ISSN 0031-3203.

2011

Humayun, A., Raza, Shan-e-Ahmed, Waddington, C., Abouna, Sylvie, Khan, Michael and Rajpoot, Nasir M. (Nasir Mahmood) (2011) A novel framework for molecular co-expression pattern analysis in multi-channel toponome fluorescence images. In: MIAAB 2011 (Microscopic Image Analysis with Applications in Biology), Heidelberg, Germany, 2 Sep 2011. Published in: Proceedings of the 2011 Microscopic Image Analysis with Applications in Biology (Submitted)

Loyek, Christian, Rajpoot, Nasir M. (Nasir Mahmood), Khan, Michael and Nattkemper, Tim W. (2011) BioIMAX : a web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data. BMC Bioinformatics, Vol.12 (No.1). Article 297. doi:10.1186/1471-2105-12-297 ISSN 1471-2105.

Qureshi, S. A., Mirza, S. M., Rajpoot, Nasir M. (Nasir Mahmood) and Arif, Muhammad (2011) Hybrid diversification operator-based evolutionary approach towards tomographic image reconstruction. IEEE Transactions on Image Processing, Vol.20 (No.7). pp. 1977-1990. doi:10.1109/TIP.2011.2107328 ISSN 1057-7149.

Arif, Muhammad, Rajpoot, Nasir M. (Nasir Mahmood), Nattkemper, Tim W., Technow, Ulrike, Chakraborty, Trinad, Fisch, Nicole, Jensen, Nickels A. and Niehaus, Karsten (2011) Quantification of cell infection caused by Listeria monocytogenes invasion. Journal of Biotechnology, Vol.154 (No.1). pp. 76-83. doi:10.1016/j.jbiotec.2011.03.008 ISSN 0168-1656.

2010

Gurcan, M. N., Madabhushi, A. and Rajpoot, Nasir M. (Nasir Mahmood) (2010) Pattern recognition in histopathological images : an ICPR 2010 contest. In: International Conference on Pattern Recognition (ICPR 2010), Istanbul, Turkey, 23-26 August, 2010 doi:10.1007/978-3-642-17711-8_23

Wang, Liang, Zhao, Gouying, Rajpoot, Nasir M. and Nixon, Mark S. (2010) Special issue on new advances in video-based gait analysis and applications : challenges and solutions. IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics, Vol.40 (No.4, Sp.Iss.). pp. 982-985. doi:10.1109/TSMCB.2010.2046351

Qureshi, Hammad A. and Rajpoot, Nasir M. (Nasir Mahmood) (2010) Comparative analysis of spatial and transform domain methods for meningioma subtype classification. In: Medical Image Understanding and Analysis (MIUA 2010), Coventry, UK, 6-7 July 2010. Published in: Proceedings of Medical Image Understanding and Analysis 2010 pp. 209-213. ISBN 9780956615008.

Bhalerao, Abhir and Rajpoot, Nasir M. (Nasir Mahmood), eds. (2010) Proceedings of Medical Image Understanding and Analysis 2010. Coventry: Warwick Print. ISBN 9780956615008

Bhalerao, Abhir and Rajpoot, N., eds. (2010) Proceedings of medical image understanding and analysis 2010. Coventry: University of Warwick, Department of Computer Science. ISBN 9780956615008

2009

Gurcan, Metin N., Boucheron, Laura E., Can, Ali, Madabhushi, Anant, Rajpoot, Nasir M. and Yener, Bülent (2009) Histopathological image analysis : a review. IEEE Reviews in Biomedical Engineering, Vol.2 . pp. 147-171. doi:10.1109/RBME.2009.2034865 ISSN 1937-3333.

Elson, D. and Rajpoot, Nasir M. (Nasir Mahmood), eds. (2009) Proceedings MICCAI 2009 Workshop on Optical Tissue Microscopy, Histology, and Endoscopy (OPTIMHisE). MICCAI Conference. ISBN 9780956377609

Murtaza, Kashif, Khan, Sohaib and Rajpoot, Nasir M. (Nasir Mahmood) (2009) VillageFinder : segmentation of nucleated villages in satellite imagery. In: British Machine Vision Conference (BMVC 2009), London, 7-10 Sept 2009 (Unpublished)

Qureshi, Hammad A., Rajpoot, Nasir M. (Nasir Mahmood), Nattkemper, Tim W. and Hans, Volkmar (2009) A robust adaptive wavelet-based method for classification of meningioma histology images. In: Workshop on Optical Tissue Image Analysis in Microscopy, Histology, and Endoscopy (OPTIMHisE), London, UK, 20-24 Sept 2009 pp. 31-42. (Unpublished)

Rajpoot, Nasir M., Yao, Zhen and Wilson, Roland (2009) Nonlinear filtering for image denoising. In: Chen, W. K., (ed.) Passive, Active, and Digital Filters (Circuits and Filters Handbook, 3rd Edition). The Circuits and Filters Handbook . Boca Raton, FL: CRC Press. ISBN 9781420058857

Butt, I. and Rajpoot, Nasir M. (Nasir Mahmood) (2009) Multilateral filtering : a novel framework for generic similarity-based image denoising. In: 16th IEEE International Conference on Image Processing (ICIP 2009), Cairo, Egypt, 7-10 Nov, 2009. Published in: 16th IEEE International Conference on Image Processing (ICIP 2009) pp. 2981-2984. ISBN 9781424456536. doi:10.1109/ICIP.2009.5414513 ISSN 1522-4880.

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2009) Texture based classification of hyperspectral colon biopsy samples using CLBP. In: IEEE Internaional Symposium on Biomedical Imaging - From Nano to Macro, Boston, MA, June 28-July 01, 2009. Published in: 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Proceedings pp. 1011-1014. ISBN 9781424439317. doi:10.1109/ISBI.2009.5193226

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2009) Texture based classification of hyperspectral colon biopsy samples using CLBP. In: 6th IEEE International Symposium on Biomedical Imaging (ISBI 2009), Boston, MA, 28 Jun -1 Jul 2009. Published in: IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09. pp. 1011-1014. ISBN 9781424439317. doi:10.1109/ISBI.2009.5193226 ISSN 1945-7928.

2008

Rajpoot, Kashif, Noble, Alison, Grau, Vicente and Rajpoot, Nasir M. (Nasir Mahmood) (2008) Feature detection from echocardiography images using local phase information. In: 12th Medical Image Understanding and Analysis (MIUA 2008), Dundee, Scotland, 2-3 Jul 2008 (Unpublished)

Qureshi, Hammad A., Wilson, Roland and Rajpoot, Nasir M. (2008) Optimal wavelet basis for wavelet packets based meningioma subtype classification. In: 12th Medical Image Understanding and Analysis (MIUA 2008), Dundee, Scotland, 2-3 Jul 2008 (Unpublished)

Qureshi, Hammad A., Sertel, O., Rajpoot, Nasir M. and Wilson, Roland (2008) Adaptive discriminant wavelet packet transform and local binary patterns for meningioma subtype classification. In: Metaxas, D. and Axel, L. and Fichtinger, G. and Szekely, G., (eds.) Medical image computing and computer-assisted intervention – MICCAI 2008. Lecture Notes in Computer Science, Volume 5242 . Springer-Verlag, pp. 196-204. ISBN 9783540859901

Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood) and Noble, J. (2008) Discrete wavelet diffusion for image denoising. In: Elmoataz, A. and Lezoray, O. and Nouboud, F. and Mammass, D., (eds.) Image and signal processing. Lecture Notes in Computer Science, Volume 5099 . Springer-Verlag, pp. 20-28. ISBN 9783540699040

Wilson, Roland, Bowen, Adam, Mullins, Andrew and Rajpoot, Nasir M. (2008) Estimation of a 3D motion field from a multi-camera array using a multiresolution Gaussian mixture model. In: Workshop on Multi-camera and Multi-modal Sensor Fusion: Algorithms and Applications, Marseille, France, 18 Oct 2008 (Unpublished)

Bowen, Adam, Mullins, Andrew, Wilson, Roland and Rajpoot, Nasir M. (2008) Estimation of dense, non-rigid motion fields from a multi-camera array using a hierarchical mixture model. In: Perales, F. J. and Fisher, R. B., (eds.) Articulated motion and deformable objects. Lecture Notes in Computer Science (5098). Springer-Verlag, pp. 11-21. ISBN 9783540705161

Herold, Julia, Friedenberger, Manuela, Bode, Marcus, Rajpoot, Nasir M. (Nasir Mahmood), Schubert, Walter and Nattkemper, Tim W. (2008) Flexible synapse detection in fluorescence micrographs by modeling human expert grading. In: 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008), Paris, France, 14-17 May 2008. Published in: 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008. pp. 1347-1350. ISBN 9781424420025. doi:10.1109/ISBI.2008.4541254

Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood) and Sahinalp, Suleyman Cenk (2008) Implementation and experimental evaluation of flexible parsing for dynamic dictionary based data compression. In: 2nd Workshop on Algorithm Engineering (WAE 1998), Saarbrucken, Germany, 20-22 Aug 2008. Published in: Proceedings WAE’98

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2008) Spatial analysis for colon biopsy classification from hyperspectral imagery. Annals of the BMVA, Volume 2008 (Number 4).

Rajpoot, Nasir M. (Nasir Mahmood) and Arif, Muhammad (2008) Unsupervised shape clustering using diffusion map. Annals of the BMVA, Volume 2008 (Number 5).

2007

Mullins, Andrew, Bowen, Adam, Wilson, Roland and Rajpoot, Nasir M. (2007) Bayesian surface estimation from multiple cameras using a prior based on the visual hull and its application to image based rendering. In: British Machine Vision Conference (BMVC 2007), Coventry, UK, 10-13 Sep 2007 doi:10.5244/C.21.39 (Unpublished)

Rajpoot, Nasir M. (Nasir Mahmood), Arif, Muhammad and Bhalerao, Abhir (2007) Unsupervised learning of shape manifolds. In: British Machine Vision Conference (BMVC 2007), Coventry, UK, 10-13 Sep 2007. Published in: Proceedings of the British Machine Conference ISBN 1901725340. doi:10.5244/C.21.90

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2007) Classification of colon biopsy samples by spatial analysis of a single spectral band from its hyperspectral cube. In: 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 Jul 2007 (Unpublished)

Qureshi, Hammad A., Rajpoot, Nasir M., Wilson, Roland, Nattkemper, Tim W. and Hans, Volkmar (2007) Comparative analysis of discriminant wavelet packet features and raw image features for classification of meningioma subtypes. In: 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 Jul 2007 (Unpublished)

Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Qureshi, Hammad A. and Rajpoot, Kashif (2007) Hyperspectral texture analysis for colon tissue biopsy classification. In: International Symposium on Health Informatics and Bioinformatics (HIBIT 2007), Antalya, Turkey, 30 Apr - May 2 2007 (Unpublished)

Arif, M. and Rajpoot, Nasir M. (Nasir Mahmood) (2007) Classification of potential nuclei in histology images using shape manifold learning. In: International Conference on Machine Vision (ICMV 2007), Islamabad, Pakistan, 28-29 Dec 2007. Published in: International Conference on Machine Vision, 2007. ICMV 2007. pp. 113-118. ISBN 9781424416240.

Arif, Muhammad and Rajpoot, Nasir M. (Nasir Mahmood) (2007) Detection of nuclei by unsupervised manifold learning. In: 11th Medical Image Understanding and Analysis (MIUA 2007), Aberystwyth, Wales, 17-18 July, 2007

Yao, Zhen, Rajpoot, Nasir M. and Wilson, Roland (2007) Directional wavelet analysis with Fourier-type bases for image processing. In: Tao, Q. and Mang, V. and Xu, Y., (eds.) Wavelet Analysis and Applications. Applied and Numerical Harmonic Analysis . Birkhäuser Basel, pp. 123-142. ISBN 9783764377779

Rajpoot, Nasir M. (Nasir Mahmood) and Bhalerao, Abhir, eds. (2007) Proceedings of British machine vision conference 2007. Warwick Print. ISBN 0902683815

Bowen, Adam, Mullins, Andrew, Wilson, Roland and Rajpoot, Nasir M. (2007) Surface estimation and tracking using sequential MCMC methods for video based rendering. In: IEEE International Conference on Image Processing (ICIP 2007), San Antonio, TX, 16-19 Sep 2007. Published in: IEEE International Conference on Image Processing, 2007. ICIP 2007, Volume 2 pp. 561-564. ISBN 9781424414369. doi:10.1109/ICIP.2007.4379217 ISSN 1522-4880.

Mullins, Andrew, Bowen, Adam, Wilson, Roland and Rajpoot, Nasir M. (2007) Video based rendering using surfaces patches. In: 1st International Conference on 3DTV, Kos Isl, Greece, 07-09 May 2007. Published in: 2007 3DTV Conference pp. 338-341. ISBN 9781424407217. doi:10.1109/3DTV.2007.4379379

2006

Masood, Khalid and Rajpoot, Nasir M. (Nasir Mahmood) (2006) Hyperspectral colon biopsy classification into normal and malignant categories. University of Warwick. Department of Computer Science. (Unpublished)

Qureshi, H., Rajpoot, Nasir M. (Nasir Mahmood), Masood, K. and Hans, V. (2006) Classification of meningiomas using discriminant wavelet packets and learning vector quantization. In: Medical Image Understanding and Analysis (MIUA 2006), Manchester, UK, 4-5 Jul 2006

Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Qureshi, Hammad A. and Rajpoot, Kashif (2006) Co-occurrence and morphological analysis for colon tissue biopsy classification. In: 4th International Workshop on Frontiers of Information Technology (FIT 2006), Islamabad, Pakistan, 20-21 Dec 2006

Masood, Khalid, Rajpoot, Nasir M. (Nasir Mahmood), Rajpoot, Kashif and Qureshi, Hammad A. (2006) Hyperspectral colon tissue classification using morphological analysis. In: 2nd International Conference on Emerging Technologies, Peshawar, PAKISTAN, NOV 13-14, 2006. Published in: Second International Conference on Emerging Technologies 2006, Proceedings pp. 735-741. ISBN 978-1-4244-0503-9. doi:10.1109/ICET.2006.335947

Mullins, Andrew, Bowen, Adam, Wilson, Roland and Rajpoot, Nasir M. (2006) Multiresolution particle filters in image processing. In: 7th International Conference on Mathematics in Signal Processing, Cirencester, UK, 18-20 Dec 2006

Mullins, Andrew, Bowen, Adam, Wilson, Roland and Rajpoot, Nasir M. (2006) Scene reconstruction from multiple views using a locally planar model. In: Vision, Modeling and Visualisation (VMV 2006), Aachen, Germany, 22-24 Nov 2006

Hussain, Arshad, Rajpoot, Nasir M. and Rajpoot, Kashif (2006) Texture classification with ants. In: IEEE International Conference on Image Processing (ICIP 2006), Georgia, USA, 8-11 Oct 2006. Published in: 2006 IEEE International Conference on Image Processing pp. 3013-3016. ISBN 1424404800. ISSN 1522-4880.

Channa, A., Rajpoot, Nasir M. (Nasir Mahmood) and Rajpoot, Kashif (2006) Texture segmentation using ant tree clustering. In: IEEE International Conference on Engineering of Intelligent Systems (ICEIS 2006), Islamabad, Pakistan, 14-15 Jan 2006. Published in: 2006 IEEE International Conference on Engineering of Intelligent Systems pp. 1-6. ISBN 1424404568.

2005

Mullins, Andrew, Bowen, Adam, Wilson, Roland and Rajpoot, Nasir M. (2005) Estimating planar patches for light field reconstruction. In: British Machine Vision Conference (BMVC 2005), Oxford, UK, 5-8 Sep 2005. Published in: Proceedings of the British Machine Vision Conference 2005 ISBN 1901725294 . doi:10.5244/C.19.23

Rajpoot, Nasir M. (Nasir Mahmood) and Masood, K. (2005) Human gait recognition with 3-D wavelets and kernel based subspace projections. In: International Workshop on Human Activity Recognition and Modelling (HAREM 2005), Oxford, UK, 9 Sep 2005

Zhen, Yao and Rajpoot, Nasir M. (Nasir Mahmood) (2005) Image denoising using multiscale directional cosine bases. In: IEEE International Conference on Image Processing (ICIP 2005), Genoa, Italy, 11-14 Sep 2005. Published in: IEEE International Conference on Image Processing, 2005. ICIP 2005., Volume 3 pp. 313-316. ISBN 0780391349.

Bowen, Adam, Mullins, Andew, Wilson, Roland and Rajpoot, Nasir M. (2005) Light field reconstruction using a planar patch model. In: Kalviainen, H. and Parkkinen, J. and Kaarna, A., (eds.) Image Analysis. Lecture Notes in Computer Science, Volume 3540 . Springer Berlin Heidelberg, pp. 85-94. ISBN 9783540263203

Bowen, Adam, Mullins, Andrew, Rajpoot, Nasir M. and Wilson, Roland (2005) Photo-consistency and multiresolution methods for light field disparity estimation. In: IEE International Conference on Visual Information Engineering (VIE 2005), Glasgow, UK, 4-6 Apr 2005

2004

Rajpoot, Nasir M., Wilson, Roland, Meyer, F. G. and Coifman, R. R. (2004) Adaptive wavelet packet basis selection for zerotree image coding. IEEE Transactions on Image Processing, Volume 12 (Number 12). pp. 1460-1472. doi:10.1109/TIP.2003.818115 ISSN 1057-7149.

Rajpoot, Nasir M. (Nasir Mahmood) (2004) Model based optimal bit allocation. University of Warwick. Department of Computer Science. (Department of Computer Science Research report). (Unpublished)

Rajpoot, Nasir M., Yao, Zhen and Wilson, Roland (2004) Adaptive wavelet restoration of noisy video sequences. In: International Conference on Image Processing (ICIP 2004), Singapore, 24-27 Oct 2004. Published in: 2004 International Conference on Image Processing, 2004. ICIP '04., Volume 2 pp. 957-960. ISBN 0780385543. ISSN 1522-4880.

Rajpoot, Kashif, Rajpoot, Nasir M. (Nasir Mahmood) and Turner, Martin J. (2004) Hyperspectral colon tissue cell classification. In: SPIE Medical Imaging (MI), US, 2004 (Unpublished)

Rajpoot, Nasir M. (Nasir Mahmood) (2004) Model based optimal bit allocation. In: Data Compression Conference (DCC 2004), Snowbird, UT, 23-25 Mar 2004. Published in: Data Compression Conference, 2004. Proceedings. DCC 2004 p. 558. ISBN 0769520820. ISSN 1068-0314.

Rajpoot, Nasir M., Wilson, Roland and Yao, Zhen (2004) Planelets : a new analysis tool for planar feature extraction. In: International Workshop on Image Analysis for Multimedia Interactive Services (5th), Lisboa, Portugal, 21-23 Apr 2004 (Unpublished)

Yao, Zhen and Rajpoot, Nasir M. (2004) Radon/ridgelet signature for image authentication. In: International Conference on Image Processing (ICIP 2004), Singapore, 24-27 Oct 2004. Published in: 2004 International Conference on Image Processing, 2004. ICIP '04., Volume 1 pp. 43-46. ISBN 0780385543. doi:10.1109/ICIP.2004.1418685 ISSN 1522-4880.

Rajpoot, Kashif and Rajpoot, Nasir M. (Nasir Mahmood) (2004) SVM optimization for hyperspectral colon tissue cell classification. In: Barillot, C. and Haynor, D. R. and Hellier, P., (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2004. Lecture Notes in Computer Science, Volume 3217 (Part 2). Springer Berlin Heidelberg, pp. 829-837. ISBN 978354022977

Rajpoot, Kashif and Rajpoot, Nasir M. (Nasir Mahmood) (2004) Wavelets and support vector machines for texture classification. In: 8th IEEE International Multitopic Conference (INMIC 2004), Lahore, Pakistan, 24-26 Dec 2004. Published in: Proceedings of INMIC 2004. 8th International Multitopic Conference, 2004. pp. 328-333. ISBN 0780386809. doi:10.1109/INMIC.2004.1492898

Rajpoot, Nasir M., Hussain, Arshad, Ali, Usman, Saleem, Kashif and Qureshi, Mahmud (2004) A novel image coding algorithm using ant colony system vector quantization. In: International Workshop on Systems, Signals and Image Processing (IWSSIP 2004), Poznan, Poland, 13-15 Sep 2004 (Unpublished)

2003

Rajpoot, Nasir M. (Nasir Mahmood) (2003) Local discriminant wavelet packet basis for texture classification. In: Wavelets - Applications in Signal and Image Processing X Conference, San Diego, CA, 04-08 Aug 2003. Published in: Wavelets: Applications in Signal and Image Processing X. SPIE Proceedings, Volume 5207 (Part 1 & 2). pp. 774-783. ISBN 0819450804. ISSN 0277-786X.

Bhalerao, Abhir and Rajpoot, Nasir M. (Nasir Mahmood) (2003) Discriminant feature selection for texture classification. In: British Machine Vision Conference (BMVC 2003), Norwich, UK. Published in: Proceedings for the British Machine Vision Conference 2003 ISBN 1901725235.

Wilson, Roland and Rajpoot, Nasir M. (2003) Image volume denoising using a Fourier-wavelet basis. In: 6th Baiona Workshop on Signal Processing in Communications (Baiona SPC 2003), Baiona, Spain, Sep 2003

Awan, A. Majid, Rajpoot, Nasir M. (Nasir Mahmood) and Husain, S. Afaq (2003) Stack-run adaptive wavelet image compression. In: IEEE Data Compression Conference (2003), Utah, US, 25-27 Mar 2003. Published in: DCC 2003 : proceedings : Data Compression Conference : March 25-27, 2003, Snowbird, Utah p. 414. ISBN 0769518966. ISSN 1068-0314.

Rajpoot, Kashif and Rajpoot, Nasir M. (Nasir Mahmood) (2003) Wavelet based segmentation of hyperspectral colon tissue imagery. In: 7th IEEE International Multi Topic Conference (INMIC 2003), Islamabad, Pakistan, 9 Dec 2003. Published in: 7th International Multi Topic Conference, 2003. INMIC 2003. pp. 38-43. ISBN 0780381831. doi:10.1109/INMIC.2003.1416612

2002

Yao, Zhen and Rajpoot, Nasir M. (2002) Less redundant codes for variable size dictionaries. In: IEEE Data Compression Conference (DCC 2002), Utah, US, 2-4 Apr 2002. Published in: Proceedings DCC 2002 : data compression conference p. 481. ISBN 0769514774. ISSN 1068-0314.

Rajpoot, Nasir M. (Nasir Mahmood) (2002) Simulation of the rate-distortion behaviour of a memoryless Laplacian source. In: 4th Middle Eastern Symposium on Simulation and Modelling (MESM 2002), Sharjah, UAE, 28-30 Oct 2002

Rajpoot, Nasir M. (Nasir Mahmood) (2002) Texture classification using discriminant wavelet packet subbands. In: 45th Midwest Symposium on Circuits and Systems (MWSCAS 2002), Tulsa, OK, 04-07 Aug 2002. Published in: The 2002 45th Midwest Symposium on Circuits and Systems : conference proceedings : August 4-7, 2002, Tulsa, Oklahoma., Volume 3 pp. 300-303. ISBN 0780375238.

2001

Rajpoot, Nasir M. (Nasir Mahmood) (2001) Adaptive wavelet image compression. PhD thesis, University of Warwick.

Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood) and Sahinalp, Suleyman Cenk (2001) The effect of flexible parsing for dynamic dictionary based data compression. Journal of Experimental Algorithmics (JEA), Volume 6 . pp. 1-19. Article Number 10 . doi:10.1145/945394.945404 ISSN 1084-6654.

Rajpoot, Nasir M., Wilson, Roland, Meyer, François G. and Coifman, Ronald R. (2001) A new basis selection paradigm for wavelet packet image coding. In: International Conference on Image Processing (ICIP 2001), Thessaloniki, Greece , 07-10 Oct 2001. Published in: Proceedings. 2001 International Conference on Image Processing, 2001. , Volume 3 pp. 816-819. ISBN 0780367251.

1999

Rajpoot, Nasir M., Meyer, F. G., Wilson, Roland and Coifman, R. R. (1999) On zerotree quantization for embedded wavelet packet image coding. In: IEEE International Conference on Image Processing (ICIP 1999), Kobe, Japan, 24-28 Oct 1999. Published in: 1999 International Conference on Image Processing, 1999. ICIP 99. Proceedings., Volume 2 pp. 283-287. ISBN 0780354672.

Matias, Yossi, Rajpoot, Nasir M. (Nasir Mahmood) and Sahinalp, Suleyman Cenk (1999) The effect of flexible parsing for dynamic dictionary based data compression. In: IEEE Data Compression Conference (DCC 1999), Utah, US, 29-31 Mar 1999. Published in: Proceedings. Data Compression Conference, 1999. pp. 238-246. ISSN 076950096X.

1998

Rajpoot, Nasir M. and Wilson, Roland (1998) Progressive image coding using augmented zerotrees of wavelet coefficients. University of Warwick. Department of Computer Science. (Department of Computer Science research report). (Unpublished)