Journal Article

Minas, Giorgos, Momiji, Hiroshi, Jenkins, Dafyd J., Costa, Maria J. (Maria João), Rand, David A. and Finkenstädt, Bärbel (2017) ReTrOS : a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data. BMC Bioinformatics, 18 (316). doi:doi: 10.1186/s12859-017-1695-8

Sidaway-Lee, Kate, Costa, Maria J. (Maria João), Rand, D. A. (David A.), Finkenstädt, Bärbel and Penfield, Steven (2014) Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response. Genome Biology, Volume 15 (Number 3). Article number R45. doi:10.1186/gb-2014-15-3-r45

Costa, Maria J. (Maria João), Finkenstädt, Bärbel, Gould, Peter D., Foreman, Julia, Halliday, Karen J., Hall, Anthony, Roche, Véronique, Lévi, Francis A. and Rand, D. A. (David A.) (2013) Inference on periodicity of circadian time series. Biostatistics, Volume 14 (Number 4). pp. 792-806. doi:10.1093/biostatistics/kxt020

Gould, Peter D., Ugarte, Nicolas, Domijan, Mirela, Costa, Maria J. (Maria João), Foreman, Julia, MacGregor, Dana, Rose, Ken, Griffiths, Jayne, Millar, A. J. (Andrew J.), Finkenstädt, Bärbel, Penfield, Steven, Rand, D. A. (David A.), Halliday, Karen J. and Hall, Anthony J. W. (2013) Network balance via CRY signalling controls the Arabidopsis circadian clock over ambient temperatures. Molecular Systems Biology, Volume 9 . Article no. 650. doi:10.1038/msb.2013.7

Komorowski, Michal, Costa, Maria J. (Maria João), Rand, D. A. (David A.) and Stumpf, M. P. H. (Michael P. H.) (2011) Sensitivity, robustness, and identifiability in stochastic chemical kinetics models. Proceedings of the National Academy of Sciences, Volume 108 (Number 21). pp. 8645-8650. doi:10.1073/pnas.1015814108

Costa, Maria J. (Maria João) and Shaw, J. Ewart H. (2009) Parametrization and penalties in spline models with an application to survival analysis. Computational Statistics & Data Analysis, Vol.53 (No.3). pp. 657-670. doi:10.1016/j.csda.2008.07.026

Working or Discussion Paper

Costa, Maria J. (Maria João) and Shaw, J. Ewart H. (2008) Parametrization and penalties in spline models with an application to survival analysis. Working Paper. Coventry: University of Warwick. Centre for Research in Statistical Methodology . Working papers, Vol.2008 (No.2).

Thesis or Dissertation

Costa, Maria J. (Maria João) (2008) Penalized spline models and applications. PhD thesis, University of Warwick.