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Number of items: 38.
McLellan, Hazel, Harvey, Sarah E., Steinbrenner, Jens, Armstrong, Miles R., He, Qin, Clewes, Rachel, Pritchard, Leighton, Wang, Wei, Wang, Shumei, Nussbaumer, Thomas et al.
(2022)
Exploiting breakdown in nonhost effectorβtarget interactions to boost host disease resistance.
Proceedings of the National Academy of Sciences, 119
(35).
e2114064119.
doi:10.1073/pnas.2114064119
ISSN 0027-8424.
Xu, Hao, Lantzouni, Ourania, Bruggink, Tonko, Benjamins, Rene, Lanfermeijer, Frank, Denby, Katherine J., Schwechheimer, Claus and Bassel, George (2020) A molecular signal integration network underpinning Arabidopsis seed germination. Current Biology, 30 (19). pp. 3703-3712. doi:10.1016/j.cub.2020.07.012 ISSN 0960-9822.
Lehmann, Silke, Dominguez-Ferreras, Ana, Huang, Wei-Jie, Denby, Katherine J., Ntoukakis, Vardis and SchΓ€fer, Patrick (2020) Novel markers for high-throughput protoplast-based analyses of phytohormone signaling. PLoS One, 15 (6). e0234154. doi:10.1371/journal.pone.0234154 ISSN 1932-6203.
PolaΕski, Krzysztof , Gao, Bo, Mason, Sam, Brown, Paul E., Ott, Sascha, Denby, Katherine J. and Wild, David L. (2018) Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinformatics, 34 (5). pp. 884-886. doi:10.1093/bioinformatics/btx692 ISSN 1367-4803.
Hickman, Richard, Van Verk, Marcel C., Van Dijken, Anja J.H., Mendes, Marciel Pereira, Vroegop-Vos, Irene A., Caarls, Lotte, Steenbergen, Merel, Van der Nagel, Ivo, Wesselink, Gert Jan, Jironkin, Aleksey, Talbot, Adam, Rhodes, Johanna, De Vries, Michel, Schuurink, Robert C., Denby, Katherine J., Pieterse, CornΓ© M.J. and Van Wees, Saskia C.M. (2017) Architecture and dynamics of the jasmonic acid gene regulatory network. The Plant Cell, 29 (9). pp. 2086-2105. doi:10.1105/tpc.16.00958 ISSN 1040-4651.
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
ISSN 1040-4651.
Ingle, Robert A., Stoker, Claire, Stone, Wendy, Adams, Nicolette, Smith, Rob, Grant, Murray, CarrΓ©, Isabelle, Roden, Laura C. and Denby, Katherine J. (2015) Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea. The Plant Journal, 84 . pp. 937-948. doi:10.1111/tpj.13050 ISSN 0960-7412.
Lewis, Laura, Polanskia, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan D., Penfold, Christopher A., Jenkins, Dafyd J., Hills, Claire E., Baxter, Laura et al.
(2015)
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000.
The Plant Cell, 27
(11).
pp. 3038-3064.
doi:10.1105/tpc.15.00471
ISSN 1040-4651.
Windram, Oliver P. and Denby, Katherine J. (2015) Modelling signaling networks underlying plant defence. Current Opinion in Plant Biology, 27 . pp. 165-171. doi:10.1016/j.pbi.2015.07.007 ISSN 1369-5266.
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, FarrΓ©, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
ISSN 0028-646X.
Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996 ISSN 1664-302X.
Brady, Siobhan M., Burow, Meike, Busch, Wolfgang, Carlborg, Γrjan, Denby, Katherine J., Glazebrook, Jane, Hamilton, Eric S., Harmer, Stacey L., Haswell, Elizabeth S., Maloof, Julin N., Springer, Nathan M. and Kliebenstein, Daniel James (2015) Reassess the t test : interact with all your data via ANOVA. The Plant Cell, 27 (8). pp. 2088-2094. doi:10.1105/tpc.15.00238 ISSN 1040-4651.
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853 ISSN 1932-6203.
Windram, Oliver P., Penfold, Christopher A. and Denby, Katherine J. (2014) Network modeling to understand plant immunity. Annual Review of Phytopathology, Volume 52 (Number 1). pp. 93-111. doi:10.1146/annurev-phyto-102313-050103 ISSN 0066-4286.
PolaΕski, Krzysztof , Rhodes, Johanna, Hills, Claire E., Zhang, Peijun, Jenkins, Dafyd J., Kiddle, Steven J., Jironkin, Aleksey, Beynon, Jim, Buchanan-Wollaston, Vicky, Ott, Sascha and Denby, Katherine J. (2014) Wigwams : identifying gene modules co-regulated across multiple biological conditions. Bioinformatics, Volume 30 (Number 7). pp. 962-970. doi:10.1093/bioinformatics/btt728 ISSN 1367-4803.
Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.
Van der Linden, Liesl, Bredenkamp, Jane, Naidoo, Sanushka, FouchΓ©-Weich, Joanne, Denby, Katherine J., Genin, Stephane, Marco, Yves and Berger, Dave K. (2013) Gene-for-gene tolerance to bacterial wilt in Arabidopsis. Molecular Plant-Microbe Interactions, Vol.26 (No.4). pp. 398-406. doi:10.1094/MPMI-07-12-0188-R ISSN 0894-0282.
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Cevik, Volkan, Kidd, B. N., Zhang, Peijun, Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative Hub for the regulation of jasmonate-responsive gene expression in arabidopsis. Plant Physiology, Volume 160 (Number 1). pp. 541-555. doi:10.1104/pp.112.202697 ISSN 0032-0889.
Cevik, Volkan, Kidd, B. N., Zhang, P., Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiology, Vol.160 (No.1). pp. 541-555. doi:10.1104/pp.112.202697 ISSN 0032-0889.
Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. doi:10.1093/bioinformatics/bts222 ISSN 1367-4803.
Mulema, Joseph M. K. and Denby, Katherine J. (2012) Spatial and temporal transcriptomic analysis of the Arabidopsis thalianaβBotrytis cinerea interaction. Molecular Biology Reports, Volume 39 (Number 4). pp. 4039-4049. doi:10.1007/s11033-011-1185-4 ISSN 0301-4851.
Morrissey, Edward R., JuΓ‘rez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2011) Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression. Biostatistics, Vol.12 (No.4). pp. 682-694. doi:10.1093/biostatistics/kxr009 ISSN 1465-4644.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, MelanΓ© A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493 ISSN 1756-0500.
Lloyd, Amanda J., William Allwood, J., Winder, Catherine L., Dunn, Warwick B., Heald, James K., Cristescu, Simona M., Sivakumaran, Anushen, Harren, Frans J. M., Mulema, Joseph M. K., Denby, Katherine J., Goodacre, Royston, Smith, Aileen R. and Mur, Luis A. J. (2011) Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea. The Plant Journal, Vol.67 (No.5). pp. 852-868. doi:10.1111/j.1365-313X.2011.04639.x ISSN 09607412.
Mulema, Joseph M. K., Okori, Patrick and Denby, Katherine J. (2011) Proteomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction using two-dimensional liquid chromatography. African Journal of Biotechnology, Volume 10 (Number 76). pp. 17551-17563. doi:10.5897/AJB10.2558 ISSN 1684-5315.
Naidoo, Sanushka, FouchΓ©-Weich, Joanne, Law, Philip J., Denby, Katherine J., Marco, Yves and Berger, Dave K. (2011) A eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences. Forest Pathology, Volume 41 (Number 2). pp. 101-113. doi:10.1111/j.1439-0329.2010.00642.x ISSN 1437-4781.
Morrissey, Edward R., JuΓ‘rez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421 ISSN 1367-4803.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175 ISSN 1066-5277.
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
Kiddle, Steven J., Windram, Oliver P., McHattie, Stuart, Mead, A. (Andrew), Beynon, Jim, Buchanan-Wollaston, Vicky, Denby, Katherine J. and Mukherjee, Sach (2009) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics, Vol.26 (No.3). pp. 355-362. doi:10.1093/bioinformatics/btp673 ISSN 1367-4811.
Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R. and Denby, Katherine J. (2009) OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany, Vol.60 (No.13). pp. 3727-3735. doi:10.1093/jxb/erp219 ISSN 0022-0957.
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242 ISSN 1471-2105.
Zou, Cunlu, Denby, Katherine J. and Feng, Jianfeng (2009) Granger causality vs. dynamic Bayesian network inference: a comparative study. BMC Bioinformatics, Vol.10 . Article number 122. doi:10.1186/1471-2105-10-122 ISSN 1471-2105.
Murray, Shane L., Ingle, Robert A., Petersen, Lindsay N. and Denby, Katherine J. (2007) Basal resistance against pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein. Molecular Plant - Microbe Interactions, Vol.20 (No.11). pp. 1431-1438. doi:10.1094/MPMI-20-11-1431 ISSN 0894-0282.
Illing, N., Walford, S., Shen, A., Van Heerden, J., Immelman, N., Mulder, N. and Denby, Katherine J. (2007) Molecular tools to study desiccation tolerance in the resurrection plant Xerophyta humilis. In: UNSPECIFIED. Published in: South African Journal of Biology, Vol.73 (No.3). p. 487. doi:10.1016/j.sajb.2007.04.015 ISSN 0254-6299.
This list was generated on Tue Apr 23 22:41:19 2024 BST.