
The Library
Browse by Warwick Author
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Number of items: 38.
2022
McLellan, Hazel, Harvey, Sarah E., Steinbrenner, Jens, Armstrong, Miles R., He, Qin, Clewes, Rachel, Pritchard, Leighton, Wang, Wei, Wang, Shumei, Nussbaumer, Thomas et al.
(2022)
Exploiting breakdown in nonhost effector–target interactions to boost host disease resistance.
Proceedings of the National Academy of Sciences, 119
(35).
e2114064119.
doi:10.1073/pnas.2114064119
2020
Xu, Hao, Lantzouni, Ourania, Bruggink, Tonko, Benjamins, Rene, Lanfermeijer, Frank, Denby, Katherine J., Schwechheimer, Claus and Bassel, George (2020) A molecular signal integration network underpinning Arabidopsis seed germination. Current Biology, 30 (19). pp. 3703-3712. doi:10.1016/j.cub.2020.07.012
Lehmann, Silke, Dominguez-Ferreras, Ana, Huang, Wei-Jie, Denby, Katherine J., Ntoukakis, Vardis and Schäfer, Patrick (2020) Novel markers for high-throughput protoplast-based analyses of phytohormone signaling. PLoS One, 15 (6). e0234154. doi:10.1371/journal.pone.0234154
2018
Polański, Krzysztof , Gao, Bo, Mason, Sam, Brown, Paul E., Ott, Sascha, Denby, Katherine J. and Wild, David L. (2018) Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinformatics, 34 (5). pp. 884-886. doi:10.1093/bioinformatics/btx692
2017
Hickman, Richard, Van Verk, Marcel C., Van Dijken, Anja J.H., Mendes, Marciel Pereira, Vroegop-Vos, Irene A., Caarls, Lotte, Steenbergen, Merel, Van der Nagel, Ivo, Wesselink, Gert Jan, Jironkin, Aleksey, Talbot, Adam, Rhodes, Johanna, De Vries, Michel, Schuurink, Robert C., Denby, Katherine J., Pieterse, Corné M.J. and Van Wees, Saskia C.M. (2017) Architecture and dynamics of the jasmonic acid gene regulatory network. The Plant Cell, 29 (9). pp. 2086-2105. doi:10.1105/tpc.16.00958
2016
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
2015
Ingle, Robert A., Stoker, Claire, Stone, Wendy, Adams, Nicolette, Smith, Rob, Grant, Murray, Carré, Isabelle, Roden, Laura C. and Denby, Katherine J. (2015) Jasmonate signalling drives time-of-day differences in susceptibility of Arabidopsis to the fungal pathogen Botrytis cinerea. The Plant Journal, 84 . pp. 937-948. doi:10.1111/tpj.13050
Lewis, Laura, Polanskia, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan D., Penfold, Christopher A., Jenkins, Dafyd J., Hills, Claire E., Baxter, Laura et al.
(2015)
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000.
The Plant Cell, 27
(11).
pp. 3038-3064.
doi:10.1105/tpc.15.00471
Windram, Oliver P. and Denby, Katherine J. (2015) Modelling signaling networks underlying plant defence. Current Opinion in Plant Biology, 27 . pp. 165-171. doi:10.1016/j.pbi.2015.07.007
Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian et al.
(2015)
Standards for plant synthetic biology : a common syntax for exchange of DNA parts.
New Phytologist, 208
(1).
pp. 13-19.
doi:10.1111/nph.13532
Atwell, Susanna, Corwin, Jason A., Soltis, Nicole E., Subedy, Anushryia, Denby, Katherine J. and Kliebenstein, Daniel James (2015) Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity. Frontiers in Microbiology, 6 . pp. 1-14. 996. doi:10.3389/fmicb.2015.00996
Brady, Siobhan M., Burow, Meike, Busch, Wolfgang, Carlborg, Örjan, Denby, Katherine J., Glazebrook, Jane, Hamilton, Eric S., Harmer, Stacey L., Haswell, Elizabeth S., Maloof, Julin N., Springer, Nathan M. and Kliebenstein, Daniel James (2015) Reassess the t test : interact with all your data via ANOVA. The Plant Cell, 27 (8). pp. 2088-2094. doi:10.1105/tpc.15.00238
2014
Carstens, Maryke, McCrindle, Tyronne K., Adams, Nicolette, Diener, Anastashia, Guzha, Delroy T., Murray, Shane L., Parker, Jane E., Denby, Katherine J. and Ingle, Robert A. (2014) Increased resistance to biotrophic pathogens in the arabidopsis constitutive induced resistance 1 mutant is EDS1 and PAD4-dependent and modulated by environmental temperature. PLoS One, Volume 9 (Number 10). Article number e109853. doi:10.1371/journal.pone.0109853
Windram, Oliver P., Penfold, Christopher A. and Denby, Katherine J. (2014) Network modeling to understand plant immunity. Annual Review of Phytopathology, Volume 52 (Number 1). pp. 93-111. doi:10.1146/annurev-phyto-102313-050103
Polański, Krzysztof , Rhodes, Johanna, Hills, Claire E., Zhang, Peijun, Jenkins, Dafyd J., Kiddle, Steven J., Jironkin, Aleksey, Beynon, Jim, Buchanan-Wollaston, Vicky, Ott, Sascha and Denby, Katherine J. (2014) Wigwams : identifying gene modules co-regulated across multiple biological conditions. Bioinformatics, Volume 30 (Number 7). pp. 962-970. doi:10.1093/bioinformatics/btt728
2013
Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194
Van der Linden, Liesl, Bredenkamp, Jane, Naidoo, Sanushka, Fouché-Weich, Joanne, Denby, Katherine J., Genin, Stephane, Marco, Yves and Berger, Dave K. (2013) Gene-for-gene tolerance to bacterial wilt in Arabidopsis. Molecular Plant-Microbe Interactions, Vol.26 (No.4). pp. 398-406. doi:10.1094/MPMI-07-12-0188-R
2012
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
Cevik, Volkan, Kidd, B. N., Zhang, Peijun, Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative Hub for the regulation of jasmonate-responsive gene expression in arabidopsis. Plant Physiology, Volume 160 (Number 1). pp. 541-555. doi:10.1104/pp.112.202697
Cevik, Volkan, Kidd, B. N., Zhang, P., Hills, Claire E., Kiddle, Steven J., Denby, Katherine J., Holub, E. B., Cahill, D. M., Manners, J. M., Schenk, P. M., Beynon, Jim and Kazan, K. (2012) MEDIATOR25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiology, Vol.160 (No.1). pp. 541-555. doi:10.1104/pp.112.202697
Penfold, Christopher A., Buchanan-Wollaston, Vicky, Denby, Katherine J. and Wild, David L. (2012) Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks. Bioinformatics, Vol.28 (No.12). i233-i241. doi:10.1093/bioinformatics/bts222
Mulema, Joseph M. K. and Denby, Katherine J. (2012) Spatial and temporal transcriptomic analysis of the Arabidopsis thaliana–Botrytis cinerea interaction. Molecular Biology Reports, Volume 39 (Number 4). pp. 4039-4049. doi:10.1007/s11033-011-1185-4
2011
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2011) Inferring the time-invariant topology of a nonlinear sparse gene regulatory network using fully Bayesian spline autoregression. Biostatistics, Vol.12 (No.4). pp. 682-694. doi:10.1093/biostatistics/kxr009
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
Alexandersson, Erik, Becker, John V. W., Jacobson, Dan, Nguema-Ona, Eric, Steyn, Cobus, Denby, Katherine J. and Vivier, Melané A. (2011) Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. BMC Research Notes, Vol.4 (No.1). p. 493. doi:10.1186/1756-0500-4-493
Lloyd, Amanda J., William Allwood, J., Winder, Catherine L., Dunn, Warwick B., Heald, James K., Cristescu, Simona M., Sivakumaran, Anushen, Harren, Frans J. M., Mulema, Joseph M. K., Denby, Katherine J., Goodacre, Royston, Smith, Aileen R. and Mur, Luis A. J. (2011) Metabolomic approaches reveal that cell wall modifications play a major role in ethylene-mediated resistance against Botrytis cinerea. The Plant Journal, Vol.67 (No.5). pp. 852-868. doi:10.1111/j.1365-313X.2011.04639.x
Mulema, Joseph M. K., Okori, Patrick and Denby, Katherine J. (2011) Proteomic analysis of the Arabidopsis thaliana-Botrytis cinerea interaction using two-dimensional liquid chromatography. African Journal of Biotechnology, Volume 10 (Number 76). pp. 17551-17563. doi:10.5897/AJB10.2558
Naidoo, Sanushka, Fouché-Weich, Joanne, Law, Philip J., Denby, Katherine J., Marco, Yves and Berger, Dave K. (2011) A eucalyptus bacterial wilt isolate from South Africa is pathogenic on Arabidopsis and manipulates host defences. Forest Pathology, Volume 41 (Number 2). pp. 101-113. doi:10.1111/j.1439-0329.2010.00642.x
2010
Morrissey, Edward R., Juárez, Miguel A., Denby, Katherine J. and Burroughs, Nigel John (2010) On reverse engineering of gene interaction networks using time course data with repeated measurements. Bioinformatics, Vol.26 (No.18). pp. 2305-2312. doi:10.1093/bioinformatics/btq421
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. Journal of Computational Biology , Volume 17 (Number 3). pp. 355-367. doi:10.1089/cmb.2009.0175
Stegle, Oliver, Denby, Katherine J., Cooke, Emma J., Wild, David L., Ghahramani, Zoubin and Borgwardt, Karsten M. (2010) A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. In: Research in Computational Molecular Biology : Proceedings of the 13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Lecture Notes in Computer Science, Volume 5541 . Berlin Heidelberg: Springer, pp. 201-216. ISBN 9783642020087
2009
Kiddle, Steven J., Windram, Oliver P., McHattie, Stuart, Mead, A. (Andrew), Beynon, Jim, Buchanan-Wollaston, Vicky, Denby, Katherine J. and Mukherjee, Sach (2009) Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana. Bioinformatics, Vol.26 (No.3). pp. 355-362. doi:10.1093/bioinformatics/btp673
Petersen, Lindsay N., Ingle, Robert A., Knight, Marc R. and Denby, Katherine J. (2009) OXI1 protein kinase is required for plant immunity against Pseudomonas syringae in Arabidopsis. Journal of Experimental Botany, Vol.60 (No.13). pp. 3727-3735. doi:10.1093/jxb/erp219
Savage, Richard S., Heller, K. (Katherine), Xu, Yang, Ghahramani, Zoubin, Truman, William M., Grant, Murray, Denby, Katherine J. and Wild, David L. (2009) R/BHC : fast Bayesian hierarchical clustering for microarray data. BMC Bioinformatics, 10 . 242. doi:10.1186/1471-2105-10-242
Zou, Cunlu, Denby, Katherine J. and Feng, Jianfeng (2009) Granger causality vs. dynamic Bayesian network inference: a comparative study. BMC Bioinformatics, Vol.10 . Article number 122. doi:10.1186/1471-2105-10-122
2007
Murray, Shane L., Ingle, Robert A., Petersen, Lindsay N. and Denby, Katherine J. (2007) Basal resistance against pseudomonas syringae in Arabidopsis involves WRKY53 and a protein with homology to a nematode resistance protein. Molecular Plant - Microbe Interactions, Vol.20 (No.11). pp. 1431-1438. doi:10.1094/MPMI-20-11-1431
Illing, N., Walford, S., Shen, A., Van Heerden, J., Immelman, N., Mulder, N. and Denby, Katherine J. (2007) Molecular tools to study desiccation tolerance in the resurrection plant Xerophyta humilis. In: UNSPECIFIED. Published in: South African Journal of Biology, Vol.73 (No.3). p. 487. ISSN 0254-6299. doi:10.1016/j.sajb.2007.04.015
This list was generated on Fri Jan 27 16:21:28 2023 GMT.