2017

Smith, Oliver , Palmer, Sarah A., Clapham, Alan J., Rose, Pamela, Liu, Yuan, Wang, Jun and Allaby, Robin G.. (2017) Small RNA activity in archaeological barley shows novel germination inhibition in response to environment. Molecular Biology and Evolution . ISSN 0737-4038 (In Press)

Zhou, Yong, Chen, Zhongxu, Cheng, Mengping, Chen, Jian, Zhu, Tingting, Wang, Rui, Liu, Yaxi, Qi, Pengfei, Chen, Guoyue, Jiang, Qiantao, Wei, Yuming, Luo, Ming-Cheng, Nevo, Eviatar, Allaby, Robin G., Liu, Dengcai, Wang, Jirui, Dvorák, Jan and Zheng, Youliang. (2017) Uncovering the dispersion history, adaptive evolution and selection of wheat in China. Plant Biotechnology Journal . ISSN 1467-7644 (In Press)

Payacan, Claudia, Moncada, Ximena, Rojas, Gloria, Clarke, Andrew C., Chung, Kuo-Fang, Allaby, Robin G., Seelenfreund, Daniela and Seelenfreund, Andrea. (2017) Phylogeography of herbarium specimens of asexually propagated paper mulberry [Broussonetia papyrifera (L.) L’Hér. ex Vent. (Moraceae)] reveals genetic diversity across the Pacific. Annals of Botany . ISSN 0305-7364 (In Press)

Kistler, Logan, Ware, Roselyn, Smith, Oliver, Collins, Matthew and Allaby, Robin G.. (2017) A new model for ancient DNA decay based on paleogenomic meta-analysis. Nucleic Acids Research . ISSN 0305-1048 (In Press)

2016

Allaby, Robin G., Kitchen, James and Fuller, Dorian Q.. (2016) Surprisingly low limits of selection in plant domestication. Evolutionary Bioinformatics (2). pp. 41-51. ISSN 1176-9343

2015

Smith, Oliver, Momber, G., Bates, R., Garwood, P., Fitch, S., Pallen, Mark J., Gaffney, V. and Allaby, Robin G.. (2015) Response to comment on "Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago". Science, 349 (6245). p. 247. ISSN 0036-8075

Smith, Oliver , Momber, G., Bates, R., Garwood, P., Fitch, S., Pallen, Mark J., Gaffney, V. and Allaby, Robin G.. (2015) Sedimentary DNA from a submerged site reveals wheat in the British Isles 8000 years ago. Science, Volume 347 (Number 6225). pp. 998-1001. ISSN 0036-8075

Allaby, Robin G., Kistler, Logan, Gutaker, Rafał M., Ware, Roselyn, Kitchen, James, Smith, Oliver and Clarke, Andrew C.. (2015) Archaeogenomic insights into the adaptation of plants to the human environment : pushing plant–hominin co-evolution back to the Pliocene. Journal of Human Evolution, Volume 79 . pp. 150-157. ISSN 0047-2484

2014

Allaby, Robin G., Gutaker, Rafał M., Clarke, Andrew C., Pearson, Neil (Researcher in life sciences), Ware, Roselyn, Palmer, Sarah A., Kitchen, James and Smith, Oliver. (2014) Using archaeogenomic and computational approaches to unravel the history of local adaptation in crops. Philosophical Transactions of the Royal Society B: Biological Sciences, Volume 370 (Number 1660). Article number 20130377. ISSN 0962-8436

Smith, Oliver , Clapham, Alan J., Rose, Pam, Liu, Yuan, Wang, Jun and Allaby, Robin G.. (2014) Genomic methylation patterns in archaeological barley show de-methylation as a time-dependent diagenetic process. Scientific Reports, Volume 4 . Article number 5559. ISSN 2045-2322

Fuller, D. Q., Denham, T., Arroyo-Kalin, M., Lucas, L., Stevens, C. J., Qin, L., Allaby, Robin G. and Purugganan, M. D.. (2014) Convergent evolution and parallelism in plant domestication revealed by an expanding archaeological record. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 17). pp. 6147-6152. ISSN 0027-8424

. (2014) Current perspectives and the future of domestication studies. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 17). pp. 6139-6146. ISSN 0027-8424

. (2014) Storytelling and story testing in domestication. Proceedings of the National Academy of Sciences of the United States of America, Volume 111 (Number 17). pp. 6159-6164. ISSN 0027-8424

Smith, Oliver , Clapham, Alan J., Rose, Pam, Liu, Yuan, Wang, Jun and Allaby, Robin G.. (2014) A complete ancient RNA genome : identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus. Scientific Reports, Volume 4 . Article number 4003. ISSN 2045-2322

2013

Boivin, Nicole, Fuller, Dorian Q., Dennell, Robin, Allaby, Robin G. and Petraglia, Michael D.. (2013) Human dispersal across diverse environments of Asia during the Upper Pleistocene. Quaternary International, Volume 300 . pp. 32-47. ISSN 1040-6182

Kitchen, James and Allaby, Robin G.. (2013) Systems modeling at multiple levels of regulation : linking systems and genetic Networks to spatially explicit plant populations. Plants, Volume 2 (Number 1). pp. 16-49. ISSN 2223-7747

2012

Palmer, Sarah A., Clapham, A. J., Rose, P., Freitas, F. O., Owen, B. D., Beresford-Jones, D., Moore, Jonathan D., Kitchen, James and Allaby, Robin G.. (2012) Archaeogenomic evidence of punctuated genome evolution in Gossypium. Molecular Biology and Evolution, Volume 29 (Number 8). pp. 2031-2038. ISSN 0737-4038

Kitchen, James and Allaby, Robin G.. (2012) The limits of mean-field heterozygosity estimates under spatial extension in simulated plant populations. PLoS ONE, Vol.7 (No.8). e43254. ISSN 1932-6203

Fuller, Dorian Q., Willcox, G. and Allaby, Robin G.. (2012) Early agricultural pathways : moving outside the 'core area' hypothesis in Southwest Asia. Journal of Experimental Botany, Vol.63 (No.2). pp. 617-633. ISSN 0022-0957

Fu, Yong-Bi, Diederichsen, Axel and Allaby, Robin G. . (2012) Locus-specific view of flax domestication history. Ecology and Evolution, Vol.2 (No.1). pp. 139-152. ISSN 20457758

Kitchen, James, Moore, Jonathan D., Palmer, Sarah A. and Allaby, Robin G.. (2012) MCMC-ODPR : primer design optimization using Markov Chain Monte Carlo sampling. BMC Bioinformatics, Vol.13 (No.1). p. 287. ISSN 1471-2105

Palmer, Sarah A., Smith, Oliver and Allaby, Robin G.. (2012) The blossoming of plant archaeogenetics. Annals of Anatomy, Vol.194 (No.1). pp. 146-156. ISSN 0940-9602

2011

Fuller, Dorian Q., Boivin, Nicole, Ph. D., Hoogervorst, Tom and Allaby, Robin G.. (2011) Across the Indian Ocean : the prehistoric movement of plants and animals. Antiquity, Vol.85 (No.328). pp. 544-558. ISSN 1745-1744

Fuller, Dorian Q, Willcox, George and Allaby, Robin G.. (2011) Cultivation and domestication had multiple origins: arguments against the core area hypothesis for the origins of agriculture in the Near East. World Archaeology, Vol. 43 (No. 4). pp. 628-652. ISSN 0043-8243

2010

Bergfjord, C., Karg, S., Rast-Eicher, A., Nosch, M. -L., Mannering, U., Allaby, Robin G., Murphy, B. M. and Holst, B. (2010) Comment on "30,000-year-old wild flax fibers". Science, Vol.328 (No.5986). 1634 . ISSN 0036-8075

Fu, Yong-Bi and Allaby, Robin G.. (2010) Phylogenetic network of Linum species as revealed by non-coding chloroplast DNA sequences. Genetic Resources and Crop Evolution, Vol.57 (No.5). pp. 667-677. ISSN 0925-9864

Fuller, Dorian Q., Allaby, Robin G. and Stevens, Chris. (2010) Domestication as innovation : the entanglement of techniques, technology and chance in the domestication of cereal crops. World Archaeology, Vol.42 (No.1). pp. 13-28. ISSN 0043-8243

Allaby, Robin G.. (2010) Integrating the processes in the evolutionary system of domestication. Journal of Experimental Botany, Vol.61 (No.4). pp. 935-944. ISSN 0022-0957

Allaby, Robin G., Brown, T. A. and Fuller, Dorian Q. (2010) A simulation of the effect of inbreeding on crop domestication genetics with comments on the integration of archaeobotany and genetics: a reply to Honne and Heun. Vegetation History and Archaeobotany, Vol.19 (No.2). pp. 151-158. ISSN 0939-6314

2009

Brown, T. A., Jones, Martin K., Powell, Wayne and Allaby, Robin G. (2009) The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution, Vol.24 (No.2). pp. 103-109. ISSN 0169-5347

Palmer, Sarah A., Moore, Jonathan D., Clapham, Alan J., Rose, Pamela and Allaby, Robin G.. (2009) Archaeogenetic evidence of ancient Nubian barley evolution from six to two-row indicates local adaptation. PLoS ONE , Vol.4 (No.7). e6301. ISSN 1932-6203

2008

Brown, T. A., Jones, Martin K., Powell, Wayne and Allaby, Robin G.. (2008) The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology & Evolution, Vol.24 (No.2). pp. 103-109. ISSN 0169-5347

Allaby, Robin G., Fuller, Dorian Q. and Brown, T. A. (2008) Reply to Ross-Ibarra and Gaut : Multiple domestications do appear monophyletic if an appropriate model is used. Proceedings of the National Academy of Sciences of the United States of America, Vol.105 (No.49). E106-E106. ISSN 0027-8424

Allaby, Robin G., Fuller, Dorian Q. and Brown, T. A.. (2008) The genetic expectations of a protracted model for the origins of domesticated crops. Proceedings of the National Academy of Sciences of the United States of America, Vol.105 (No.37). pp. 13982-13986. ISSN 0027-8424

Allaby, Robin G. . (2008) The rise of plant domestication : life in the slow lane. Biologist, Vol.55 (No.2). pp. 94-99. ISSN 0006-3347

Moore, Jonathan D. and Allaby, Robin G.. (2008) TreeMos : a high-throughput phylogenomic approach to find and visualize phylogenetic mosaicism. Bioinformatics, Vol.24 (No.5). pp. 717-718. ISSN 1367-4803

2007

Ho, Simon Y. W., Kolokotronis, Sergios-Orestis and Allaby, Robin G.. (2007) Elevated substitution rates estimated from ancient DNA sequences. Biology Letters, Vol.3 (No.6). pp. 702-705. ISSN 1744-9561

Allaby, Robin G. and Woodwark, Mathew. (2007) Phylogenomic analysis reveals extensive phylogenetic mosaicism in the Human GPCR Superfamily. Evolutionary Bioinformatics, Vol.3 . pp. 357-370. ISSN 1176-9343