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Journal Article
Vlachou, Denise, Veretennikova, Maria, Usselmann, Laura Emma Jane, Vasilyev, Vadim, Ott, Sascha, Bjarnason, Georg A., Dallmann, Robert, LΓ©vi, Francis A. and Rand, David A. (2024) TimeTeller : a tool to probe the circadian clock as a multigene dynamical system. PLoS Computational Biology, 20 (2). e1011779. doi:10.1371/journal.pcbi.1011779 ISSN 1553-7358.
Vlachou, Denise, Veretennikova, Maria, Usselmann, Laura Emma Jane, Vasilyev, Vadim, Ott, Sascha, Bjarnason, Georg A., Dallmann, Robert, LΓ©vi, Francis A. and Rand, David A. (2024) TimeTeller : a tool to probe the circadian clock as a multigene dynamical system. PLoS Computational Biology . ISSN 1553-7358. (In Press)
Lagunas, Beatriz, Richards, Luke, Sergaki, Chrysi, Burgess, Jamie, Pardal , Alonso Javier, Hussain, Rana M. F., Richmond, Bethany L., Baxter, Laura, Roy, Proyash, Pakidi, Anastasia, Stovold, Gina, VΓ‘zquez, SaΓΊl, Ott, Sascha, SchΓ€fer, Patrick and Gifford, Miriam L. (2023) Rhizobial nitrogen fixation efficiency shapes endosphere bacterial communities and Medicago truncatula host growth. Microbiome, 11 (1). 146. doi:10.1186/s40168-023-01592-0 ISSN 2049-2618.
Baxter, L., Gordon, N. S., Ott, S., Wang, J., Patel, P., Goel, A., Piechocki, K., Silcock, L., Sale, C., Zeegers, M. P. et al.
(2023)
Properties of non-coding mutation hotspots as urinary biomarkers for bladder cancer detection.
Scientific Reports, 13
(1).
1060.
doi:10.1038/s41598-023-27675-4
ISSN 2045-2322.
Schang, Anne-Laure, Van Steenwinckel, Juliette, Ioannidou, Zoi S., Lipecki, Julia, Rich-Griffin, Charlotte, Woolley-Allen, Kate, Dyer, Nigel P., Le Charpentier, Tifenn, SchΓ€fer, Patrick, Fleiss, Bobbi, Ott, Sascha, SabΓ©ran-Djoneidi, DΓ©lara, Mezger, ValΓ©rie and Gressens, Pierre (2022) Epigenetic priming of immune/inflammatory pathways activation and abnormal activity of cell cycle pathway in a perinatal model of white matter injury. Cell Death & Disease, 13 (12). 1038. doi:10.1038/s41419-022-05483-4 ISSN 2041-4889.
Achom, Mingkee, Roy, Proyash, Lagunas, Beatriz, Picot, Emma, Richards, L., Bonyadi-Pour, Roxanna, Pardal , Alonso Javier, Baxter, Laura, Richmond, Bethany L., Aschauer, N., Fletcher, E., Rowson, M., Blackwell, J., Rich-Griffin, C., Mysore, K. S., Wen, J., Ott, Sascha, CarrΓ©, Isabelle A. and Gifford, Miriam L. (2022) Plant circadian clock control of Medicago truncatula nodulation via regulation of Nodule Cysteine-Rich peptides. Journal of Experimental Botany, 73 (5). pp. 2142-2156. doi:10.1093/jxb/erab526 ISSN 0022-0957.
Lipecki, Julia, Mitchell, Andrew E., Muter, Joanne, Lucas, Emma S., Makwana, Komal, Fishwick, Katherine, Odendaal, Joshua, Hawkes, Amelia, Vrljicak, Pavle, Brosens, Jan J. and Ott, Sascha (2022) EndoTime : non-categorical timing estimates for luteal endometrium. Human Reproduction, 37 (4). pp. 747-761. doi:10.1093/humrep/deac006 ISSN 0268-1161.
Pratt, Hillary G., Steinberger, Kayla J., Mihalik, Nicole E., Ott, Sascha, Whalley, Thomas, Szomolay, Barbara, Boone, Brian A. and Eubank, Timothy D. (2021) Macrophage and neutrophil interactions in the pancreatic tumor microenvironment drive the pathogenesis of pancreatic cancer. Cancers, 14 (1). e194. doi:10.3390/cancers14010194 ISSN 2072-6694.
Karlikowska, Magdalena, Singh, Albel, Bhatt, Apoorva, Ott, Sascha, Bottrill, Andrew R., Besra, Gurdyal S. and Fullam, Elizabeth (2021) Biochemical and phenotypic characterisation of the Mycobacterium smegmatis transporter UspABC. The Cell Surface, 7 . 100052. doi:10.1016/j.tcsw.2021.100052 ISSN 2468-2330.
Diniz-da-Costa, Maria, Kong, Chow-Seng, Fishwick, Katherine, Rawlings, Thomas, Brighton, Paul (Paul J.), Hawkes, Amelia, Odendaal, Joshua, Quenby, Siobhan, Ott, Sascha, Lucas, Emma S., Vrljicak, Pavle and Brosens, Jan J. (2021) Characterization of highly proliferative decidual precursor cells during the window of implantation in human endometrium. Stem Cells, 39 (8). pp. 1067-1080. doi:10.1002/stem.3367 ISSN 1066-5099.
Lucciola, Raffaella, Vrljicak, Pavle, Gurung, Shanti, Filby, Caitlin, Darzi, Saeedeh, Muter, Joanne, Ott, Sascha, Brosens, Jan J. and Gargett, Caroline E. (2020) Impact of sustained transforming growth factor-Ξ² receptor inhibition on chromatin accessibility and gene expression in cultured human endometrial MSC. Frontiers in Cell and Developmental Biology, 8 . 567610. doi:10.3389/fcell.2020.567610 ISSN 2296-634X.
Rich-Griffin, Charlotte, Eichmann, Ruth, Reitz, Marco U., Hermann, Sophie, Woolley-Allen, Kate, Brown, Paul E., Wiwatdirekkul, Kate, Esteban, Eddi, Pasha, Asher, Kogel, Karl-Heinz, Provart, Nicholas J., Ott, Sascha and SchΓ€fer, Patrick (2020) Regulation of cell type-specific immunity networks in Arabidopsis roots. The Plant Cell . tpc.00154.2020. doi:10.1105/tpc.20.00154 ISSN 1040-4651.
Lucas, Emma S., Vrljicak, Pavle, Muter, Joanne, Diniz-da-Costa, Maria, Brighton, Paul (Paul J.), Kong, Chow-Seng, Lipecki, Julia, Fishwick, Katherine J., Odendaal, Joshua, Ewington, Lauren J., Quenby, Siobhan, Ott, Sascha and Brosens, Jan J. (2020) Recurrent pregnancy loss is associated with a pro-senescent decidual response during the peri-implantation window. Communications Biology, 3 (1). 37. doi:10.1038/s42003-020-0763-1 ISSN 2399-3642.
Rich-Griffin, Charlotte, Stechemesser, Annika, Finch, Jessica A., Lucas, Emma S., Ott, Sascha and SchΓ€fer, Patrick (2019) Single-cell transcriptomics : a high-resolution avenue for plant functional genomics. Trends in Plant Science . doi:10.1016/j.tplants.2019.10.008 ISSN 1360-1385.
Lagunas, Beatriz, Achom, Mingkee, Bonyadi-Pour, Roxanna, Pardal , Alonso Javier, Richmond, Bethany L., Sergaki, Chrysi, VΓ‘zquez, SaΓΊl, SchΓ€fer, Patrick, Ott, Sascha, Hammond, John and Gifford, Miriam L. (2019) Regulation of resource partitioning coordinates nitrogen and rhizobia responses and autoregulation of nodulation in the legume Medicago truncatula. Molecular Plant, 12 (6). pp. 833-846. doi:10.1016/j.molp.2019.03.014 ISSN 1674-2052.
Adams, Sally, Grundy, Jack, Veflingstad, Siren R., Dyer, Nigel, Hannah, Matthew, Ott, Sascha and CarrΓ©, Isabelle A. (2018) Circadian control of abscisic acid biosynthesis and signalling pathways revealed by genome-wide analysis of LHY binding targets. New Phytologist, 220 (3). pp. 893-907. doi:10.1111/nph.15415 ISSN 0028-646X.
Vrljicak, Pavle, Lucas, Emma S., Lansdowne, Lauren, Lucciola, Raffaella, Muter, Joanne, Dyer, Nigel P., Brosens, Jan J. and Ott, Sascha (2018) Analysis of chromatin accessibility in decidualizing human endometrial stromal cells. FASEB Journal, 32 (5). 2467-2477 . doi:10.1096/fj.201701098R ISSN 0892-6638.
Rius, Cristina, Attaf, Meriem, Tungatt, Katie, Bianchi, Valentina, Legut, Mateusz, Bovay, Amandine, Donia, Marco, thor Straten, Per, Peakman, Mark, Svane, Inge Marie, Ott, Sascha, Connor, Tom, Szomolay, Barbara, Dolton, Garry and Sewell, Andrew K. (2018) PeptideβMHC class I tetramers can fail to detect relevant functional T cell clonotypes and underestimate antigen-reactive T cell populations. The Journal of Immunology, 200 (7). pp. 2263-2279. doi:10.4049/jimmunol.1700242 ISSN 0022-1767.
PolaΕski, Krzysztof , Gao, Bo, Mason, Sam, Brown, Paul E., Ott, Sascha, Denby, Katherine J. and Wild, David L. (2018) Bringing numerous methods for expression and promoter analysis to a public cloud computing service. Bioinformatics, 34 (5). pp. 884-886. doi:10.1093/bioinformatics/btx692 ISSN 1367-4803.
Armitage, Andrew D., Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8 (1). 13530 . doi:10.1038/s41598-018-30335-7 ISSN 2045-2322.
Brighton, Paul (Paul J.), Maruyama, Yojiro, Fishwick, Katherine, Vrljicak, Pavle, Tewary, Shreeya, Fujihara, Risa, Muter, Joanne, Lucas, Emma S., Yamada, Taihei, Woods, Laura, Lucciola, Raffaella, Lee, Yie Hou, Takeda, Satoru, Ott, Sascha, Hemberger, Myriam, Quenby, Siobhan and Brosens, Jan J. (2017) Clearance of senescent decidual cells by uterine natural killer cells in cycling human endometrium. eLife, 6 . e31274. doi:10.7554/eLife.31274 ISSN 2050-084X.
Brignall, Ruth, Cauchy, Pierre, Bevington, Sarah L., Gorman, Bethany, Pisco, Angela O., Bagnall, James, Boddington, Christopher, Rowe, William, England, Hazel, Rich, Kevin, Schmidt, Lorraine, Dyer, Nigel P., Travis, Mark A., Ott, Sascha, Jackson, Dean A., Cockerill, Peter N. and Paszek, Pawel (2017) Integration of kinase and calcium signaling at the level of chromatin underlies inducible gene activation in T cells. The Journal of Immunology, 199 (8). pp. 2652-2667. ji1602033. doi:10.4049/jimmunol.1602033 ISSN 0022-1767.
Salker, Madhuri S., Singh, Yogesh, Zeng, Ni, Chen, Hong, Zhang, Shaqiu, Umbach, Anja T, Fakhri, Hajar, Kohlhofer, Ursula, Quintanilla-Martinez, Leticia, Durairaj, Ruban R. Peter et al.
(2017)
Loss of endometrial sodium glucose cotransporter SGLT1 is detrimental to embryo survival and fetal growth in pregnancy.
Scientific Reports, 7
(1).
doi:10.1038/s41598-017-11674-3
ISSN 2045-2322.
Adaikalakoteswari, Antonysunil, Vatish, Manu, Alam, Mohammad T., Ott, Sascha, Kumar, Sudhesh and Saravanan, P. (2017) Low vitamin B12 in pregnancy is associated with adipose-derived circulating miRs targeting PPARΞ³ and insulin resistance. The Journal of Clinical Endocrinology & Metabolism, 102 (11). pp. 4200-4209. doi:10.1210/jc.2017-01155 ISSN 0021-972X.
Donia, Marco, Kjeldsen, Julie Westerlin, Andersen, Rikke, Westergaard, Marie Christine Wulff, Bianchi, Valentina, Legut, Mateusz, Attaf, Meriem, Szomolay, Barbara, Ott, Sascha, Dolton, Garry, Lyngaa, Rikke, Hadrup, Sine Reker, Sewell, Andrew K. and Svane, Inge Marie (2017) PD-1 + polyfunctional T cells dominate the periphery after tumor-infiltrating lymphocyte therapy for cancer. Clinical Cancer Research, 23 (19). pp. 5779-5788. doi:10.1158/1078-0432.CCR-16-1692 ISSN 1078-0432.
Lucas, Emma S., Dyer, Nigel P., Fishwick, Katherine, Ott, Sascha and Brosens, Jan J. (2016) Success after failure : the role of endometrial stem cells in recurrent miscarriage. Reproduction, 152 (5). R159-R166. doi:10.1530/REP-16-0306 ISSN 1470-1626.
Bechtold, Ulrike, Penfold, Christopher A., Jenkins, Dafyd J., Legaie, Roxane, Moore, Jonathan D., Lawson, Tracy, Matthews, Jack S.A., Vialet-Chabrand, Silvere R. M., Baxter, Laura, Subramaniam, Sunitha et al.
(2016)
Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis.
The Plant Cell, 28
(2).
pp. 345-366.
doi:10.1105/tpc.15.00910
ISSN 1040-4651.
Bevington, S. L., Cauchy, P., Piper, Jason, Bertrand, E., Lalli, N, Jarvis, R. C., Gilding, L. N., Ott, Sascha, Bonifer, C. and Cockerill, P. N. (2016) Inducible chromatin priming is associated with the establishment of immunological memory in T cells. The EMBO Journal, 35 (5). pp. 515-535. doi:10.15252/embj.201592534 ISSN 0261-4189.
Real, Francisco X., Ward, Douglas G., Baxter, Laura, Gordon, Naheema S., Ott, Sascha, Savage, Richard S., Beggs, Andrew D., James, Jonathan D., Lickiss, Jennifer, Green, Shaun, Wallis, Yvonne, Wei, Wenbin, James, Nicholas D., Zeegers, Maurice P., Cheng, K. K., Mathews, Glenn M., Patel, Prashant, Griffiths, Michael and Bryan, Richard T. (2016) Multiplex PCR and next generation sequencing for the non-invasive detection of bladder cancer. PLoS One, 11 (2). pp. 1-11. e0149756. doi:10.1371/journal.pone.0149756 ISSN 1932-6203.
Lucas, Emma S., Dyer, Nigel P., Murakami, Keisuke, Hou Lee, Yie, Chan, Yi-Wah, Grimaldi, Giulia, Muter, Joanne, Brighton, Paul (Paul J.), Moore, Jonathan D., Patel, Gnyaneshwari, Chan, Jerry K.Y., Takeda, Satoru, Lam, Eric W-F., Quenby, Siobhan, Ott, Sascha and Brosens, Jan J. (2016) Loss of endometrial plasticity in recurrent pregnancy loss. Stem Cells, 34 (2). pp. 346-356. doi:10.1002/stem.2222 ISSN 1066-5099.
Piper, Jason, Assi, Salam A., Cauchy, Pierre, Ladroue, Christophe, Cockerill, Peter N., Bonifer, Constanze and Ott, Sascha (2015) Wellington-bootstrap : differential DNase-seq footprinting identifies cell-type determining transcription factors. BMC Genomics, 16 (1). pp. 1-8. doi:10.1186/s12864-015-2081-4 ISSN 1471-2164.
Lewis, Laura, Polanskia, Krzysztof, de Torres-Zabala, Marta, Jayaraman, Siddharth, Bowden, Laura, Moore, Jonathan D., Penfold, Christopher A., Jenkins, Dafyd J., Hills, Claire E., Baxter, Laura et al.
(2015)
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with pseudomonas syringae pv tomato DC3000.
The Plant Cell, 27
(11).
pp. 3038-3064.
doi:10.1105/tpc.15.00471
ISSN 1040-4651.
Vance, Keith W., Woodcock, Dan J., Reid, John E., Bretschneider, Till, Ott, Sascha and Koentges, Georgy (2015) Conserved cis-regulatory modules control robustness in Msx1 expression at single-cell resolution. Genome Biology and Evolution, 7 (9). pp. 2762-2778. doi:10.1093/gbe/evv179 ISSN 1759-6653.
Cauchy, Pierre, James, Sally R., Zacarias-Cabeza, Joaquin, Ptasinska, Anetta, Imperato, Maria Rosaria, Assi, Salam A., Piper, Jason, Canestraro, Martina, Hoogenkamp, Maarten, Raghavan, Manoj, Loke, Justin, Akiki, Susanna, Clokie, Samuel J. H., Richards, Stephen J., Westhead, David R., Griffiths, Michael J., Ott, Sascha, Bonifer, Constanze and Cockerill, Peter N. (2015) Chronic FLT3-ITD signaling in acute myeloid leukemia is connected to a specific chromatin signature. Cell reports, 12 (5). pp. 821-836. doi:10.1016/j.celrep.2015.06.069 ISSN 2211-1247.
Ptasinska, Anetta, Assi, Salam A., Martinez-Soria, Natalia, Imperato, Maria Rosaria, Piper, Jason, Cauchy, Pierre, Pickin, Anna, James, Sally R., Hoogenkamp, Maarten, Williamson, Dan, Wu, Mengchu, Tenen, Daniel G., Ott, Sascha, Westhead, David R., Cockerill, Peter N., Heidenreich, Olaf and Bonifer, Constanze (2014) Identification of a dynamic core transcriptional network in t(8;21) AML that regulates Differentiation block and self-renewal. Cell Reports, 8 (6). pp. 1974-1988. 24. doi:10.1016/j.celrep.2014.08.024 ISSN 2211-1247.
Papanayotou, Costis, Benhaddou, Ataaillah, Camus, Anne, Perea-Gomez, Aitana, Jouneau, Alice, Mezger, ValΓ©rie, Langa, Francina, Ott, Sascha, SabΓ©ran-Djoneidi, DΓ©lara and Collignon, JΓ©rΓ΄me (2014) A novel Nodal enhancer dependent on pluripotency factors and Smad2/3 signaling conditions a regulatory switch during epiblast maturation. PLoS Biology, Volume 12 (Number 6). Article number e1001890. doi:10.1371/journal.pbio.1001890 ISSN 1545-7885.
PolaΕski, Krzysztof , Rhodes, Johanna, Hills, Claire E., Zhang, Peijun, Jenkins, Dafyd J., Kiddle, Steven J., Jironkin, Aleksey, Beynon, Jim, Buchanan-Wollaston, Vicky, Ott, Sascha and Denby, Katherine J. (2014) Wigwams : identifying gene modules co-regulated across multiple biological conditions. Bioinformatics, Volume 30 (Number 7). pp. 962-970. doi:10.1093/bioinformatics/btt728 ISSN 1367-4803.
Gould, Phillip S., Dyer, Nigel P., Croft, Wayne D., Ott, Sascha and Easton, A. J. (Andrew J.) (2014) Cellular mRNAs access second ORFs using a novel amino acid sequence-dependent coupled translation termination-reinitiation mechanism. RNA, 20 . pp. 373-381. doi:10.1261/rna.041574.113 ISSN 1355-8382.
Piper, Jason, Elze, Markus C., Cauchy, Pierre, Cockerill, Peter N., Bonifer, Constanze and Ott, Sascha (2013) Wellington : a novel method for the accurate identification of digital genomic footprints from DNase-seq data. Nucleic Acids Research, Volume 41 (Number 21). Article number e201. doi:10.1093/nar/gkt850 ISSN 0305-1048.
Bechtold, Ulrike, Albihlal, Waleed S., Lawson, Tracy, Fryer, Michael J., Sparrow, Penelope A. C., Richard, François, Persad, Ramona, Bowden, Laura, Hickman, Richard D. G., Martin, Cathie, Beynon, Jim, Buchanan-Wollaston, Vicky, Baker, N. R., Morison, James I. L., Schoffl, Friedrich, Ott, Sascha and Mullineaux, Philip M. (2013) Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection. Journal of Experimental Botany, Volume 64 (Number 11). pp. 3467-3481. doi:10.1093/jxb/ert185 ISSN 0022-0957.
Hickman, Richard J., Hill, C., Penfold, Christopher A., Breeze, Emily, Bowden, Laura, Moore, Jonathan D., Zhang, Peijun, Jackson, Alison C., Cooke, Emma J., Bewicke-Copley, Findlay, Mead, A. (Andrew), Beynon, Jim, Wild, David L., Denby, Katherine J., Ott, Sascha and Buchanan-Wollaston, Vicky (2013) A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves. The Plant Journal, Volume 75 (Number 1). pp. 26-39. doi:10.1111/tpj.12194 ISSN 0960-7412.
Brown, Paul E., Baxter, Laura, Hickman, Richard J., Beynon, Jim, Moore, Jonathan D. and Ott, Sascha (2013) MEME-LaB : motif analysis in clusters. Bioinformatics . doi:10.1093/bioinformatics/btt248 ISSN 1367-4803.
Laranjeiro, R., Tamai, T. K., Peyric, E., Krusche, Peter, Ott, Sascha and Whitmore, D. (2013) Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing. Proceedings of the National Academy of Sciences of the United States of America, Volume 110 (Number 17). pp. 6835-6840. doi:10.1073/pnas.1217912110 ISSN 0027-8424.
Baxter, Laura, Jironkin, Aleksey, Hickman, R. D. G., Moore, Jonathan D., Barrington, Christopher, Krusche, Peter, Dyer, Nigel, Buchanan-Wollaston, Vicky, Tiskin, Alexander, Beynon, Jim, Denby, Katherine J. and Ott, Sascha (2012) Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. The Plant Cell, Vol.24 (No.10). pp. 3949-3965. doi:10.1105/tpc.112.103010 ISSN 1040-4651.
Windram, Oliver P., Madhou, Priyadharshini, McHattie, Stuart, Hill, Claire, Hickman, Richard J., Cooke, Emma J., Jenkins, Dafyd J., Penfold, Christopher A., Baxter, Laura, Breeze, Emily et al.
(2012)
Arabidopsis defense against Botrytis cinerea : chronology and regulation deciphered by high-resolution temporal transcriptomic analysis.
The Plant Cell, Vol.24
(No.9).
pp. 3530-3557.
doi:10.1105/tpc.112.102046
ISSN 1040-4651.
Downey, Mike J., Jeziorska, Danuta M., Ott, Sascha, Tamai, T. Katherine, Koentges, Georgy, Vance, Keith W. and Bretschneider, Till (2011) Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution. PLoS ONE, Vol.6 (No.12). e27886. doi:10.1371/journal.pone.0027886 ISSN 1932-6203.
Breeze, Emily, Harrison, Elizabeth, McHattie, Stuart, Hughes, Linda Karen, Hickman, Richard J., Hill, Claire, Kiddle, Steven J., Kim, Youn-sung, Penfold, Christopher A., Jenkins, Dafyd J. et al.
(2011)
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell, The, Vol.23
(No.3).
pp. 873-894.
doi:10.1105/tpc.111.083345
ISSN 1040-4651.
Granier, CΓ©line, Gurchenkov, Vasily, Perea-Gomez, Aitana, Camus, Anne, Ott, Sascha, Papanayotou, Costis, Iranzo, Julian, Moreau, Anne, Reid, John, Koentges, Georgy, SabΓ©ran-Djoneidi, DΓ©lara and Collignon, JΓ©rΓ΄me (2011) Nodal cis-regulatory elements reveal epiblast and primitive endoderm heterogeneity in the peri-implantation mouse embryo. Developmental Biology, Vol.349 (No.2). pp. 350-362. doi:10.1016/j.ydbio.2010.10.036 ISSN 0012-1606.
Picot, Emma, Krusche, Peter, Tiskin, Alexander, CarrΓ©, Isabelle A. and Ott, Sascha (2010) Evolutionary analysis of regulatory sequences (EARS) in plants. Plant Journal, Vol.64 (No.1). pp. 165-176. doi:10.1111/j.1365-313X.2010.04314.x ISSN 0960-7412.
Koohy, Hashem, Dyer, Nigel, Reid, John E., Koentges, Georgy and Ott, Sascha (2010) An alignment-free model for comparison of regulatory sequences. Bioinformatics, Vol.26 (No.19). pp. 2391-2397. doi:10.1093/bioinformatics/btq453 ISSN 1367-4803.
Vance, Keith W., Shaw, Heather M., Rodriguez, Mercedes, Ott, Sascha and Goding, Colin R. (2010) The retinoblastoma protein modulates Tbx2 functional specificity. Molecular Biology of the Cell, Vol.21 (No.15). pp. 2770-2779. doi:10.1091/mbc.E09-12-1029 ISSN 1059-1524.
SΓ‘nchez-Romero, MarΓa Antonia, Busby, S. (Stephen), Dyer, Nigel, Ott, Sascha, Millard, Andrew D. and Grainger, David C. (2010) Dynamic distribution of SeqA protein across the chromosome of Escherichia coli K-12. mBio, Vol.1 (No.1). Article number e00012-10. doi:10.1128/mBio.00012-10 ISSN 2150-7511.
Reid, J. E. (John E.), Evans, Kenneth J., Dyer, Nigel, Wernisch, Lorenz and Ott, Sascha (2010) Variable structure motifs for transcription factor binding sites. BMC Genomics, Vol.11 (Article 30). doi:10.1186/1471-2164-11-30 ISSN 1471-2164.
Spensley, Mark, Kim, Jae-Yean, Picot, Emma, Reid, John, Ott, Sascha, Helliwell, Chris and CarrΓ©, Isabelle A. (2009) Evolutionarily conserved regulatory motifs in the promoter of the Arabidopsis clock gene LATE ELONGATED HYPOCOTYL. Plant Cell, Vol.21 (No.9). pp. 2606-2623. doi:10.1105/tpc.109.069898 ISSN 1040-4651.
Reid, J. E. (John E.), Ott, Sascha and Wernisch, Lorenz (2009) Transcriptional programs : modelling higher order structure in transcriptional control. BMC Bioinformatics, Vol.10 . Article no. 218. doi:10.1186/1471-2105-10-218 ISSN 1471-2105.
Journal Item
Dyer, Nigel, Young, Lawrence S. and Ott, Sascha (2016) Artifacts in the data of Hu et al. Nature Genetics, 48 (1). pp. 2-3. ISSN 1061-4036 doi:10.1038/ng.3392
Ott, Sascha and Hebenstreit, Daniel (2014) Supply and demand : apply market forces to peer review. Nature, Volume 506 (Number 7488). p. 295. ISSN 0028-0836 doi:10.1038/506295b
This list was generated on Thu Apr 25 00:33:31 2024 BST.